RNA–Protein interactions for RNA: ENST00000466411.1

CLDN4-204, Transcript of claudin 4, humanhuman

TSL 4

Gene CLDN4, Length 593 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-204ENST00000466411 ABCA9Q8IUA7 1624 aa11.7□□□□□ -0.54
CLDN4-204ENST00000466411 KIF27Q86VH2 1401 aa11.69□□□□□ -0.54
CLDN4-204ENST00000466411 SLC4A2P04920 1241 aa11.68□□□□□ -0.54
CLDN4-204ENST00000466411 FER1L4A9Z1Z3 1794 aa11.67□□□□□ -0.54
CLDN4-204ENST00000466411 RICTORQ6R327 1708 aa11.66□□□□□ -0.54
CLDN4-204ENST00000466411 CEBPAP49715 358 aaPredicted RBP11.65□□□□□ -0.54
CLDN4-204ENST00000466411 POGZQ7Z3K3 1410 aa11.65□□□□□ -0.54
CLDN4-204ENST00000466411 FANCAO15360 1455 aa11.64□□□□□ -0.55
CLDN4-204ENST00000466411 FHOD3Q2V2M9 1422 aa11.64□□□□□ -0.55
CLDN4-204ENST00000466411 ARHGEF12Q9NZN5 1544 aa11.64□□□□□ -0.55
CLDN4-204ENST00000466411 UBAP1LF5GYI3 381 aa11.62□□□□□ -0.55
CLDN4-204ENST00000466411 ATP10BO94823 1461 aa11.62□□□□□ -0.55
CLDN4-204ENST00000466411 AKNAQ7Z591 1439 aa11.61□□□□□ -0.55
CLDN4-204ENST00000466411 HSPA1LP34931 641 aa11.61□□□□□ -0.55
CLDN4-204ENST00000466411 ZMYM4Q5VZL5 1548 aa11.6□□□□□ -0.55
CLDN4-204ENST00000466411 MLECQ14165 292 aa11.6□□□□□ -0.55
CLDN4-204ENST00000466411 UHRF1BP1Q6BDS2 1440 aa11.6□□□□□ -0.55
CLDN4-204ENST00000466411 DENND4BO75064 1496 aaPredicted RBP11.59□□□□□ -0.55
CLDN4-204ENST00000466411 EEA1Q15075 1411 aa11.58□□□□□ -0.56
CLDN4-204ENST00000466411 NCOA1Q15788 1441 aa11.57□□□□□ -0.56
CLDN4-204ENST00000466411 RGS17Q9UGC6 210 aaPredicted RBP11.56□□□□□ -0.56
CLDN4-204ENST00000466411 MAGI2Q86UL8 1455 aa11.56□□□□□ -0.56
CLDN4-204ENST00000466411 ZNF335Q9H4Z2 1342 aaPredicted RBP11.56□□□□□ -0.56
CLDN4-204ENST00000466411 ZFYVE16Q7Z3T8 1539 aa11.55□□□□□ -0.56
CLDN4-204ENST00000466411 DCAF8L1A6NGE4 600 aa11.55□□□□□ -0.56
CLDN4-204ENST00000466411 EFCAB5A4FU69 1503 aa11.55□□□□□ -0.56
CLDN4-204ENST00000466411 HECW1Q76N89 1606 aa11.52□□□□□ -0.57
CLDN4-204ENST00000466411 RAPGEF2Q9Y4G8 1499 aa11.51□□□□□ -0.57
CLDN4-204ENST00000466411 ARID3CA6NKF2 412 aa11.51□□□□□ -0.57
CLDN4-204ENST00000466411 ATP10AO60312 1499 aa11.5□□□□□ -0.57
CLDN4-204ENST00000466411 GOLGA3Q08378 1498 aa11.5□□□□□ -0.57
CLDN4-204ENST00000466411 C3P01024 1663 aa11.49□□□□□ -0.57
CLDN4-204ENST00000466411 TRAPPC8Q9Y2L5 1435 aa11.47□□□□□ -0.57
CLDN4-204ENST00000466411 ALKQ9UM73 1620 aa11.46□□□□□ -0.57
CLDN4-204ENST00000466411 C9orf84Q5VXU9 1444 aa11.46□□□□□ -0.57
CLDN4-204ENST00000466411 NCKAP5LQ9HCH0 1330 aa11.46□□□□□ -0.57
CLDN4-204ENST00000466411 CAMSAP1Q5T5Y3 1602 aa11.46□□□□□ -0.58
CLDN4-204ENST00000466411 MYCNP04198 464 aaPredicted RBP11.45□□□□□ -0.58
CLDN4-204ENST00000466411 PIP4K2BP78356 416 aa11.44□□□□□ -0.58
CLDN4-204ENST00000466411 CTTNBP2Q8WZ74 1663 aa11.43□□□□□ -0.58
CLDN4-204ENST00000466411 CFAP74Q9C0B2 1584 aa11.42□□□□□ -0.58
CLDN4-204ENST00000466411 TOM1O60784 492 aa11.42□□□□□ -0.58
CLDN4-204ENST00000466411 SRCAPQ6ZRS2 3230 aa11.42□□□□□ -0.58
CLDN4-204ENST00000466411 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.41□□□□□ -0.58
CLDN4-204ENST00000466411 SCAPERQ9BY12 1400 aa11.41□□□□□ -0.58
CLDN4-204ENST00000466411 TCOF1Q13428 1488 aaKnown RBP11.4□□□□□ -0.58
CLDN4-204ENST00000466411 POTEAQ6S8J7 498 aa11.4□□□□□ -0.58
CLDN4-204ENST00000466411 PRXQ9BXM0 1461 aa11.39□□□□□ -0.59
CLDN4-204ENST00000466411 PKD2Q13563 968 aa11.39□□□□□ -0.59
CLDN4-204ENST00000466411 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.39□□□□□ -0.59
CLDN4-204ENST00000466411 PLA2R1Q13018 1463 aa11.38□□□□□ -0.59
CLDN4-204ENST00000466411 NUP153P49790 1475 aaKnown RBP11.38□□□□□ -0.59
CLDN4-204ENST00000466411 RAPGEF6Q8TEU7 1601 aa11.36□□□□□ -0.59
CLDN4-204ENST00000466411 REREQ9P2R6 1566 aa11.36□□□□□ -0.59
CLDN4-204ENST00000466411 NPATQ14207 1427 aa11.35□□□□□ -0.59
CLDN4-204ENST00000466411 AGLP35573 1532 aa11.35□□□□□ -0.59
CLDN4-204ENST00000466411 P3H3Q8IVL6 736 aa11.34□□□□□ -0.59
CLDN4-204ENST00000466411 CPS1P31327 1500 aa11.34□□□□□ -0.59
CLDN4-204ENST00000466411 PLCH2O75038 1416 aa11.34□□□□□ -0.59
CLDN4-204ENST00000466411 PLEKHD1A6NEE1 506 aa11.33□□□□□ -0.6
CLDN4-204ENST00000466411 DIP2CQ9Y2E4 1556 aa11.33□□□□□ -0.6
CLDN4-204ENST00000466411 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.32□□□□□ -0.6
CLDN4-204ENST00000466411 HNRNPUL2Q1KMD3 747 aaKnown RBP11.32□□□□□ -0.6
CLDN4-204ENST00000466411 ZNF142P52746 1687 aaPredicted RBP11.32□□□□□ -0.6
CLDN4-204ENST00000466411 KDM5CP41229 1560 aa11.32□□□□□ -0.6
CLDN4-204ENST00000466411 AFAP1Q8N556 730 aa11.31□□□□□ -0.6
CLDN4-204ENST00000466411 PTPRKQ15262 1439 aa11.31□□□□□ -0.6
CLDN4-204ENST00000466411 SETD1AO15047 1707 aaKnown RBP11.31□□□□□ -0.6
CLDN4-204ENST00000466411 SHANK2Q9UPX8 1470 aa11.31□□□□□ -0.6
CLDN4-204ENST00000466411 CNTLNQ9NXG0 1405 aa11.3□□□□□ -0.6
CLDN4-204ENST00000466411 U3KPZ7 1027 aaPredicted RBP11.3□□□□□ -0.6
CLDN4-204ENST00000466411 ATXN8OSP0DMR3 200 aa11.29□□□□□ -0.6
CLDN4-204ENST00000466411 UPF1Q92900 1129 aaKnown RBP eCLIP11.29□□□□□ -0.6
CLDN4-204ENST00000466411 ZMYM3Q14202 1370 aa11.28□□□□□ -0.6
CLDN4-204ENST00000466411 SAMD9Q5K651 1589 aa11.28□□□□□ -0.6
CLDN4-204ENST00000466411 MROH2AA6NES4 1674 aa11.28□□□□□ -0.6
CLDN4-204ENST00000466411 ZNF518AQ6AHZ1 1483 aa11.28□□□□□ -0.6
CLDN4-204ENST00000466411 ABCA6Q8N139 1617 aa11.27□□□□□ -0.6
CLDN4-204ENST00000466411 FAM9AQ8IZU1 332 aaPredicted RBP11.27□□□□□ -0.61
CLDN4-204ENST00000466411 CEP170BQ9Y4F5 1589 aaPredicted RBP11.27□□□□□ -0.61
CLDN4-204ENST00000466411 VWDEQ8N2E2 1590 aa11.26□□□□□ -0.61
CLDN4-204ENST00000466411 NEURL4Q96JN8 1562 aa11.26□□□□□ -0.61
CLDN4-204ENST00000466411 MYO3AQ8NEV4 1616 aa11.26□□□□□ -0.61
CLDN4-204ENST00000466411 SUPT6HQ7KZ85 1726 aaKnown RBP11.26□□□□□ -0.61
CLDN4-204ENST00000466411 MLH3Q9UHC1 1453 aa11.25□□□□□ -0.61
CLDN4-204ENST00000466411 EFCAB2Q5VUJ9 269 aa11.24□□□□□ -0.61
CLDN4-204ENST00000466411 ESF1Q9H501 851 aaKnown RBP11.24□□□□□ -0.61
CLDN4-204ENST00000466411 DNMT1P26358 1616 aaKnown RBP11.22□□□□□ -0.61
CLDN4-204ENST00000466411 STRCP1A6NGW2 1772 aa11.21□□□□□ -0.61
CLDN4-204ENST00000466411 LRRC7Q96NW7 1537 aa11.19□□□□□ -0.62
CLDN4-204ENST00000466411 KIDINS220Q9ULH0 1771 aa11.19□□□□□ -0.62
CLDN4-204ENST00000466411 POLR1AO95602 1720 aaPredicted RBP11.19□□□□□ -0.62
CLDN4-204ENST00000466411 POTEDQ86YR6 584 aa11.19□□□□□ -0.62
CLDN4-204ENST00000466411 A2ML1A8K2U0 1454 aa11.19□□□□□ -0.62
CLDN4-204ENST00000466411 MYO5CQ9NQX4 1742 aa11.18□□□□□ -0.62
CLDN4-204ENST00000466411 UBTFP17480 764 aaKnown RBP11.18□□□□□ -0.62
CLDN4-204ENST00000466411 ATF5Q9Y2D1 282 aaPredicted RBP11.17□□□□□ -0.62
CLDN4-204ENST00000466411 SAMD1Q6SPF0 538 aaPredicted RBP11.16□□□□□ -0.62
CLDN4-204ENST00000466411 MED14O60244 1454 aa11.16□□□□□ -0.62
CLDN4-204ENST00000466411 RNF17Q9BXT8 1623 aaKnown RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms