RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 POLR1AO95602 1720 aaPredicted RBP10.03□□□□□ -0.8
USP48-206ENST00000464577 IRX6P78412 446 aaPredicted RBP10.03□□□□□ -0.8
USP48-206ENST00000464577 CCDC7Q96M83 1385 aa10.02□□□□□ -0.81
USP48-206ENST00000464577 PRKRIP1Q9H875 184 aaPredicted RBP10.01□□□□□ -0.81
USP48-206ENST00000464577 MAGI3Q5TCQ9 1506 aa10□□□□□ -0.81
USP48-206ENST00000464577 MIA2Q96PC5 1412 aa9.99□□□□□ -0.81
USP48-206ENST00000464577 KDM6BO15054 1643 aa9.98□□□□□ -0.81
USP48-206ENST00000464577 DCAF8L1A6NGE4 600 aa9.98□□□□□ -0.81
USP48-206ENST00000464577 CCDC184Q52MB2 194 aa9.98□□□□□ -0.81
USP48-206ENST00000464577 SMG6Q86US8 1419 aaKnown RBP9.98□□□□□ -0.81
USP48-206ENST00000464577 RPRD2Q5VT52 1461 aaKnown RBP9.97□□□□□ -0.81
USP48-206ENST00000464577 TEX14Q8IWB6 1497 aa9.97□□□□□ -0.81
USP48-206ENST00000464577 SPATA31E1Q6ZUB1 1445 aa9.97□□□□□ -0.81
USP48-206ENST00000464577 MRS2Q9HD23 443 aa9.97□□□□□ -0.81
USP48-206ENST00000464577 L3MBTL2Q969R5 705 aa9.95□□□□□ -0.82
USP48-206ENST00000464577 MPHOSPH9Q99550 1183 aa9.95□□□□□ -0.82
USP48-206ENST00000464577 ROCK1Q13464 1354 aa9.95□□□□□ -0.82
USP48-206ENST00000464577 ANKRD30BQ9BXX2 1392 aa9.95□□□□□ -0.82
USP48-206ENST00000464577 B4GALNT3Q6L9W6 998 aa9.95□□□□□ -0.82
USP48-206ENST00000464577 RRP7BPQ9NSQ0 103 aa9.95□□□□□ -0.82
USP48-206ENST00000464577 NOP58Q9Y2X3 529 aaKnown RBP9.95□□□□□ -0.82
USP48-206ENST00000464577 RNF123Q5XPI4 1314 aa9.95□□□□□ -0.82
USP48-206ENST00000464577 C11orf95C9JLR9 678 aaPredicted RBP9.94□□□□□ -0.82
USP48-206ENST00000464577 NESP48681 1621 aa9.94□□□□□ -0.82
USP48-206ENST00000464577 LAMC3Q9Y6N6 1575 aa9.94□□□□□ -0.82
USP48-206ENST00000464577 GAPVD1Q14C86 1478 aa9.94□□□□□ -0.82
USP48-206ENST00000464577 DEKP35659 375 aaKnown RBP9.94□□□□□ -0.82
USP48-206ENST00000464577 FAM9BQ8IZU0 186 aa9.94□□□□□ -0.82
USP48-206ENST00000464577 URB2Q14146 1524 aaKnown RBP9.93□□□□□ -0.82
USP48-206ENST00000464577 KIF7Q2M1P5 1343 aa9.93□□□□□ -0.82
USP48-206ENST00000464577 EPRSP07814 1512 aaKnown RBP9.93□□□□□ -0.82
USP48-206ENST00000464577 DNMT1P26358 1616 aaKnown RBP9.91□□□□□ -0.82
USP48-206ENST00000464577 WDR62O43379 1518 aa9.91□□□□□ -0.82
USP48-206ENST00000464577 MBD5Q9P267 1494 aa9.91□□□□□ -0.82
USP48-206ENST00000464577 NBPF8Q3BBV2 869 aa9.91□□□□□ -0.82
USP48-206ENST00000464577 NUDCQ9Y266 331 aa9.91□□□□□ -0.82
USP48-206ENST00000464577 DHX29Q7Z478 1369 aaKnown RBP9.9□□□□□ -0.82
USP48-206ENST00000464577 DAPK1P53355 1430 aa9.9□□□□□ -0.82
USP48-206ENST00000464577 CHIC2Q9UKJ5 165 aa9.9□□□□□ -0.82
USP48-206ENST00000464577 CNKSR2Q8WXI2 1034 aa9.89□□□□□ -0.83
USP48-206ENST00000464577 ARID4BQ4LE39 1312 aaPredicted RBP9.89□□□□□ -0.83
USP48-206ENST00000464577 IQGAP2Q13576 1575 aa9.88□□□□□ -0.83
USP48-206ENST00000464577 KIF14Q15058 1648 aa9.88□□□□□ -0.83
USP48-206ENST00000464577 TDRD9Q8NDG6 1382 aaKnown RBP9.87□□□□□ -0.83
USP48-206ENST00000464577 CDK13Q14004 1512 aaKnown RBP9.87□□□□□ -0.83
USP48-206ENST00000464577 ABCC5O15440 1437 aa9.87□□□□□ -0.83
USP48-206ENST00000464577 ANP32AP39687 249 aaKnown RBP9.87□□□□□ -0.83
USP48-206ENST00000464577 IPO9Q96P70 1041 aaKnown RBP9.87□□□□□ -0.83
USP48-206ENST00000464577 PAK3O75914 559 aaPredicted RBP9.86□□□□□ -0.83
USP48-206ENST00000464577 PZPP20742 1482 aa9.85□□□□□ -0.83
USP48-206ENST00000464577 ROCK2O75116 1388 aaKnown RBP9.85□□□□□ -0.83
USP48-206ENST00000464577 BCORL1Q5H9F3 1711 aa9.85□□□□□ -0.83
USP48-206ENST00000464577 CCDC136Q96JN2 1154 aa9.85□□□□□ -0.83
USP48-206ENST00000464577 TARBP1Q13395 1621 aaKnown RBP9.85□□□□□ -0.83
USP48-206ENST00000464577 KDM5CP41229 1560 aa9.85□□□□□ -0.83
USP48-206ENST00000464577 PBRM1Q86U86 1689 aa9.84□□□□□ -0.83
USP48-206ENST00000464577 ADAMTS12P58397 1594 aa9.84□□□□□ -0.83
USP48-206ENST00000464577 ADGBQ8N7X0 1667 aa9.84□□□□□ -0.83
USP48-206ENST00000464577 USP47Q96K76 1375 aa9.83□□□□□ -0.84
USP48-206ENST00000464577 LRPPRCP42704 1394 aaKnown RBP9.82□□□□□ -0.84
USP48-206ENST00000464577 KTN1Q86UP2 1357 aaKnown RBP9.82□□□□□ -0.84
USP48-206ENST00000464577 UHRF1BP1Q6BDS2 1440 aa9.82□□□□□ -0.84
USP48-206ENST00000464577 SLC4A1APQ9BWU0 796 aaKnown RBP9.82□□□□□ -0.84
USP48-206ENST00000464577 KIAA1107Q9UPP5 1409 aa9.82□□□□□ -0.84
USP48-206ENST00000464577 ADGRL2O95490 1459 aa9.82□□□□□ -0.84
USP48-206ENST00000464577 RALGAPBQ86X10 1494 aa9.82□□□□□ -0.84
USP48-206ENST00000464577 NBR1Q14596 966 aa9.81□□□□□ -0.84
USP48-206ENST00000464577 RTL5Q5HYW3 569 aaPredicted RBP9.81□□□□□ -0.84
USP48-206ENST00000464577 PNISRQ8TF01 805 aaKnown RBP9.81□□□□□ -0.84
USP48-206ENST00000464577 ZBTB47Q9UFB7 747 aaPredicted RBP9.81□□□□□ -0.84
USP48-206ENST00000464577 PDS5BQ9NTI5 1447 aa9.81□□□□□ -0.84
USP48-206ENST00000464577 NCBP3Q53F19 620 aaKnown RBP9.81□□□□□ -0.84
USP48-206ENST00000464577 ARHGEF12Q9NZN5 1544 aa9.8□□□□□ -0.84
USP48-206ENST00000464577 BRD4O60885 1362 aaPredicted RBP9.79□□□□□ -0.84
USP48-206ENST00000464577 KIF15Q9NS87 1388 aa9.79□□□□□ -0.84
USP48-206ENST00000464577 CROCC2H7BZ55 1655 aa9.79□□□□□ -0.84
USP48-206ENST00000464577 ITSN2Q9NZM3 1697 aa9.79□□□□□ -0.84
USP48-206ENST00000464577 E9PCH4 1651 aa9.79□□□□□ -0.84
USP48-206ENST00000464577 HOXD11P31277 338 aaPredicted RBP9.79□□□□□ -0.84
USP48-206ENST00000464577 TCERG1O14776 1098 aaKnown RBP9.78□□□□□ -0.84
USP48-206ENST00000464577 KIAA0556O60303 1618 aa9.78□□□□□ -0.84
USP48-206ENST00000464577 CAMSAP2Q08AD1 1489 aa9.78□□□□□ -0.84
USP48-206ENST00000464577 NUP153P49790 1475 aaKnown RBP9.77□□□□□ -0.84
USP48-206ENST00000464577 RAPGEF6Q8TEU7 1601 aa9.77□□□□□ -0.85
USP48-206ENST00000464577 RNF216Q9NWF9 866 aaPredicted RBP9.77□□□□□ -0.85
USP48-206ENST00000464577 RRP1P56182 461 aaKnown RBP9.76□□□□□ -0.85
USP48-206ENST00000464577 ADCY10Q96PN6 1610 aa9.76□□□□□ -0.85
USP48-206ENST00000464577 MS4A1P11836 297 aa9.76□□□□□ -0.85
USP48-206ENST00000464577 RALBP1Q15311 655 aa9.76□□□□□ -0.85
USP48-206ENST00000464577 TMC1Q8TDI8 760 aa9.76□□□□□ -0.85
USP48-206ENST00000464577 USP35Q9P2H5 1018 aa9.76□□□□□ -0.85
USP48-206ENST00000464577 MYBBP1AQ9BQG0 1328 aaKnown RBP9.76□□□□□ -0.85
USP48-206ENST00000464577 DISP1Q96F81 1524 aa9.75□□□□□ -0.85
USP48-206ENST00000464577 KDM5DQ9BY66 1539 aa9.75□□□□□ -0.85
USP48-206ENST00000464577 INSRP06213 1382 aa9.75□□□□□ -0.85
USP48-206ENST00000464577 TROQ12816 1431 aaPredicted RBP9.75□□□□□ -0.85
USP48-206ENST00000464577 ZMYM4Q5VZL5 1548 aa9.75□□□□□ -0.85
USP48-206ENST00000464577 PDE3BQ13370 1112 aa9.75□□□□□ -0.85
USP48-206ENST00000464577 ZNF644Q9H582 1327 aaPredicted RBP9.74□□□□□ -0.85
USP48-206ENST00000464577 KIAA0586Q9BVV6 1533 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms