RNA–Protein interactions for RNA: ENST00000462723.1

RPA3-205, Transcript of replication protein A3, humanhuman

TSL 2

Gene RPA3, Length 989 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3-205ENST00000462723 CASKIN1Q8WXD9 1431 aa12.71□□□□□ -0.37
RPA3-205ENST00000462723 SHROOM2Q13796 1616 aa12.71□□□□□ -0.37
RPA3-205ENST00000462723 PRG4Q92954 1404 aaPredicted RBP12.69□□□□□ -0.38
RPA3-205ENST00000462723 PPARGC1BQ86YN6 1023 aaKnown RBP12.68□□□□□ -0.38
RPA3-205ENST00000462723 MAP3K1Q13233 1512 aa12.67□□□□□ -0.38
RPA3-205ENST00000462723 ATP1B4Q9UN42 357 aaPredicted RBP12.67□□□□□ -0.38
RPA3-205ENST00000462723 ZNF579Q8NAF0 562 aaKnown RBP12.66□□□□□ -0.38
RPA3-205ENST00000462723 OTUD5Q96G74 571 aa12.66□□□□□ -0.38
RPA3-205ENST00000462723 HECW1Q76N89 1606 aa12.66□□□□□ -0.38
RPA3-205ENST00000462723 TIAM1Q13009 1591 aa12.65□□□□□ -0.38
RPA3-205ENST00000462723 CFAP43Q8NDM7 1665 aa12.65□□□□□ -0.38
RPA3-205ENST00000462723 TRIM26Q12899 539 aaPredicted RBP12.64□□□□□ -0.39
RPA3-205ENST00000462723 TTBK1Q5TCY1 1321 aaPredicted RBP12.63□□□□□ -0.39
RPA3-205ENST00000462723 RAPGEF6Q8TEU7 1601 aa12.62□□□□□ -0.39
RPA3-205ENST00000462723 CCDC18Q5T9S5 1454 aa12.62□□□□□ -0.39
RPA3-205ENST00000462723 POTEMA6NI47 508 aa12.61□□□□□ -0.39
RPA3-205ENST00000462723 ZRANB1Q9UGI0 708 aa12.61□□□□□ -0.39
RPA3-205ENST00000462723 PTPRGP23470 1445 aa12.61□□□□□ -0.39
RPA3-205ENST00000462723 LRRIQ1Q96JM4 1722 aa12.6□□□□□ -0.39
RPA3-205ENST00000462723 ERCC6L2Q5T890 1561 aa12.59□□□□□ -0.39
RPA3-205ENST00000462723 LRRC9Q6ZRR7 1453 aa12.59□□□□□ -0.39
RPA3-205ENST00000462723 EPRSP07814 1512 aaKnown RBP12.58□□□□□ -0.4
RPA3-205ENST00000462723 POTEB2H3BUK9 544 aa12.58□□□□□ -0.4
RPA3-205ENST00000462723 KANK4Q5T7N3 995 aaPredicted RBP12.58□□□□□ -0.4
RPA3-205ENST00000462723 ABCA8O94911 1581 aa12.57□□□□□ -0.4
RPA3-205ENST00000462723 PCGF6Q9BYE7 350 aa12.57□□□□□ -0.4
RPA3-205ENST00000462723 NUP153P49790 1475 aaKnown RBP12.57□□□□□ -0.4
RPA3-205ENST00000462723 PLB1Q6P1J6 1458 aa12.57□□□□□ -0.4
RPA3-205ENST00000462723 GALR2O43603 387 aaPredicted RBP12.56□□□□□ -0.4
RPA3-205ENST00000462723 POTEGQ6S5H5 508 aa12.55□□□□□ -0.4
RPA3-205ENST00000462723 MTUS2Q5JR59 1369 aa12.55□□□□□ -0.4
RPA3-205ENST00000462723 CDK13Q14004 1512 aaKnown RBP12.53□□□□□ -0.4
RPA3-205ENST00000462723 EHBP1L1Q8N3D4 1523 aa12.53□□□□□ -0.4
RPA3-205ENST00000462723 UACAQ9BZF9 1416 aa12.53□□□□□ -0.4
RPA3-205ENST00000462723 CDK11AQ9UQ88 783 aaPredicted RBP12.52□□□□□ -0.41
RPA3-205ENST00000462723 ARID3CA6NKF2 412 aa12.51□□□□□ -0.41
RPA3-205ENST00000462723 ABCC2Q92887 1545 aa12.5□□□□□ -0.41
RPA3-205ENST00000462723 SUPT6HQ7KZ85 1726 aaKnown RBP12.5□□□□□ -0.41
RPA3-205ENST00000462723 MAGI3Q5TCQ9 1506 aa12.48□□□□□ -0.41
RPA3-205ENST00000462723 UHRF1BP1LA0JNW5 1464 aa12.48□□□□□ -0.41
RPA3-205ENST00000462723 ATP10BO94823 1461 aa12.47□□□□□ -0.41
RPA3-205ENST00000462723 CREBZFQ9NS37 354 aa12.46□□□□□ -0.41
RPA3-205ENST00000462723 NCOA2Q15596 1464 aa12.46□□□□□ -0.42
RPA3-205ENST00000462723 PCDH10Q9P2E7 1040 aa12.45□□□□□ -0.42
RPA3-205ENST00000462723 TROQ12816 1431 aaPredicted RBP12.45□□□□□ -0.42
RPA3-205ENST00000462723 RRBP1Q9P2E9 1410 aaKnown RBP12.45□□□□□ -0.42
RPA3-205ENST00000462723 PHLDB1Q86UU1 1377 aa12.44□□□□□ -0.42
RPA3-205ENST00000462723 ARHGEF11O15085 1522 aa12.44□□□□□ -0.42
RPA3-205ENST00000462723 PLEKHD1A6NEE1 506 aa12.44□□□□□ -0.42
RPA3-205ENST00000462723 CCNB3Q8WWL7 1395 aa12.43□□□□□ -0.42
RPA3-205ENST00000462723 ADCY10Q96PN6 1610 aa12.42□□□□□ -0.42
RPA3-205ENST00000462723 KDM5BQ9UGL1 1544 aa12.42□□□□□ -0.42
RPA3-205ENST00000462723 ZCCHC11Q5TAX3 1644 aaKnown RBP12.41□□□□□ -0.42
RPA3-205ENST00000462723 MYOM3Q5VTT5 1437 aa12.41□□□□□ -0.42
RPA3-205ENST00000462723 KIF14Q15058 1648 aa12.4□□□□□ -0.42
RPA3-205ENST00000462723 FGD6Q6ZV73 1430 aa12.39□□□□□ -0.43
RPA3-205ENST00000462723 PELP1Q8IZL8 1130 aaKnown RBP12.39□□□□□ -0.43
RPA3-205ENST00000462723 RIMBP3CA6NJZ7 1639 aa12.39□□□□□ -0.43
RPA3-205ENST00000462723 RIMBP3BA6NNM3 1639 aa12.39□□□□□ -0.43
RPA3-205ENST00000462723 RIMBP3Q9UFD9 1639 aa12.39□□□□□ -0.43
RPA3-205ENST00000462723 PHF12Q96QT6 1004 aa12.37□□□□□ -0.43
RPA3-205ENST00000462723 ITSN2Q9NZM3 1697 aa12.37□□□□□ -0.43
RPA3-205ENST00000462723 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.36□□□□□ -0.43
RPA3-205ENST00000462723 PAK3O75914 559 aaPredicted RBP12.36□□□□□ -0.43
RPA3-205ENST00000462723 NPM1P06748 294 aaKnown RBP eCLIP12.36□□□□□ -0.43
RPA3-205ENST00000462723 FAM50AQ14320 339 aaKnown RBP12.36□□□□□ -0.43
RPA3-205ENST00000462723 MIA2Q96PC5 1412 aa12.36□□□□□ -0.43
RPA3-205ENST00000462723 PTPN23Q9H3S7 1636 aa12.34□□□□□ -0.43
RPA3-205ENST00000462723 ABCC10Q5T3U5 1492 aa12.34□□□□□ -0.43
RPA3-205ENST00000462723 STAG3Q9UJ98 1225 aa12.33□□□□□ -0.44
RPA3-205ENST00000462723 TCOF1Q13428 1488 aaKnown RBP12.32□□□□□ -0.44
RPA3-205ENST00000462723 WDR7Q9Y4E6 1490 aa12.32□□□□□ -0.44
RPA3-205ENST00000462723 GPATCH8Q9UKJ3 1502 aaKnown RBP12.32□□□□□ -0.44
RPA3-205ENST00000462723 CDC42BPAQ5VT25 1732 aa12.31□□□□□ -0.44
RPA3-205ENST00000462723 CYB5RLQ6IPT4 315 aa12.31□□□□□ -0.44
RPA3-205ENST00000462723 ITGAEP38570 1179 aa12.3□□□□□ -0.44
RPA3-205ENST00000462723 KCNH8Q96L42 1107 aa12.3□□□□□ -0.44
RPA3-205ENST00000462723 CFDP1Q9UEE9 299 aaPredicted RBP12.3□□□□□ -0.44
RPA3-205ENST00000462723 ASXL2Q76L83 1435 aa12.29□□□□□ -0.44
RPA3-205ENST00000462723 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.29□□□□□ -0.441e-6■■■■□ 23.9
RPA3-205ENST00000462723 POTEJP0CG39 1038 aa12.29□□□□□ -0.44
RPA3-205ENST00000462723 PREX2Q70Z35 1606 aa12.29□□□□□ -0.44
RPA3-205ENST00000462723 MYO5CQ9NQX4 1742 aa12.28□□□□□ -0.44
RPA3-205ENST00000462723 TTC37Q6PGP7 1564 aa12.28□□□□□ -0.44
RPA3-205ENST00000462723 METRNQ9UJH8 293 aa12.28□□□□□ -0.44
RPA3-205ENST00000462723 CAMSAP2Q08AD1 1489 aa12.26□□□□□ -0.45
RPA3-205ENST00000462723 CDC42BPBQ9Y5S2 1711 aa12.25□□□□□ -0.45
RPA3-205ENST00000462723 C7P10643 843 aa12.25□□□□□ -0.45
RPA3-205ENST00000462723 ASTLQ6HA08 431 aaPredicted RBP12.25□□□□□ -0.45
RPA3-205ENST00000462723 MAPKBP1O60336 1514 aa12.24□□□□□ -0.45
RPA3-205ENST00000462723 ARHGAP5Q13017 1502 aa12.24□□□□□ -0.45
RPA3-205ENST00000462723 LCE2DQ5TA82 110 aaPredicted RBP12.24□□□□□ -0.45
RPA3-205ENST00000462723 MAMSTRQ6ZN01 415 aa12.24□□□□□ -0.45
RPA3-205ENST00000462723 ABCA9Q8IUA7 1624 aa12.24□□□□□ -0.45
RPA3-205ENST00000462723 SLC39A7Q92504 469 aa12.24□□□□□ -0.45
RPA3-205ENST00000462723 ZNF777Q9ULD5 760 aaPredicted RBP12.24□□□□□ -0.45
RPA3-205ENST00000462723 ZNF644Q9H582 1327 aaPredicted RBP12.23□□□□□ -0.45
RPA3-205ENST00000462723 DNMT1P26358 1616 aaKnown RBP12.22□□□□□ -0.45
RPA3-205ENST00000462723 ARAP3Q8WWN8 1544 aa12.22□□□□□ -0.45
RPA3-205ENST00000462723 PLCH2O75038 1416 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms