RNA–Protein interactions for RNA: ENST00000461159.6

HDAC9-219, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,557 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-219ENST00000461159 TROQ12816 1431 aaPredicted RBP12.18□□□□□ -0.46
HDAC9-219ENST00000461159 MYOM3Q5VTT5 1437 aa12.18□□□□□ -0.46
HDAC9-219ENST00000461159 KIF14Q15058 1648 aa12.18□□□□□ -0.46
HDAC9-219ENST00000461159 PTPRKQ15262 1439 aa12.17□□□□□ -0.46
HDAC9-219ENST00000461159 ABCC2Q92887 1545 aa12.16□□□□□ -0.46
HDAC9-219ENST00000461159 YTHDC1Q96MU7 727 aaKnown RBP12.16□□□□□ -0.46
HDAC9-219ENST00000461159 CFDP1Q9UEE9 299 aaPredicted RBP12.16□□□□□ -0.46
HDAC9-219ENST00000461159 ERICH6BQ5W0A0 696 aa12.15□□□□□ -0.46
HDAC9-219ENST00000461159 ADCY10Q96PN6 1610 aa12.13□□□□□ -0.47
HDAC9-219ENST00000461159 RRP7BPQ9NSQ0 103 aa12.12□□□□□ -0.47
HDAC9-219ENST00000461159 PTPN23Q9H3S7 1636 aa12.12□□□□□ -0.47
HDAC9-219ENST00000461159 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.12□□□□□ -0.47
HDAC9-219ENST00000461159 MIER1Q8N108 512 aa12.12□□□□□ -0.47
HDAC9-219ENST00000461159 NPM1P06748 294 aaKnown RBP eCLIP12.11□□□□□ -0.47
HDAC9-219ENST00000461159 RAB3GAP2Q9H2M9 1393 aa12.1□□□□□ -0.47
HDAC9-219ENST00000461159 ZCCHC11Q5TAX3 1644 aaKnown RBP12.1□□□□□ -0.47
HDAC9-219ENST00000461159 GPATCH8Q9UKJ3 1502 aaKnown RBP12.1□□□□□ -0.47
HDAC9-219ENST00000461159 KDM5BQ9UGL1 1544 aa12.09□□□□□ -0.47
HDAC9-219ENST00000461159 HNRNPMP52272 730 aaKnown RBP eCLIP12.09□□□□□ -0.47
HDAC9-219ENST00000461159 DHX57Q6P158 1386 aaKnown RBP12.07□□□□□ -0.48
HDAC9-219ENST00000461159 UHRF1BP1LA0JNW5 1464 aa12.07□□□□□ -0.48
HDAC9-219ENST00000461159 TCOF1Q13428 1488 aaKnown RBP12.06□□□□□ -0.48
HDAC9-219ENST00000461159 ABCC10Q5T3U5 1492 aa12.06□□□□□ -0.48
HDAC9-219ENST00000461159 SETD5Q9C0A6 1442 aa12.06□□□□□ -0.48
HDAC9-219ENST00000461159 NEFLP07196 543 aa12.06□□□□□ -0.48
HDAC9-219ENST00000461159 MYT1LQ9UL68 1186 aa12.06□□□□□ -0.48
HDAC9-219ENST00000461159 RIMBP3CA6NJZ7 1639 aa12.06□□□□□ -0.48
HDAC9-219ENST00000461159 RIMBP3BA6NNM3 1639 aa12.06□□□□□ -0.48
HDAC9-219ENST00000461159 RIMBP3Q9UFD9 1639 aa12.06□□□□□ -0.48
HDAC9-219ENST00000461159 MIA2Q96PC5 1412 aa12.05□□□□□ -0.48
HDAC9-219ENST00000461159 CLSPNQ9HAW4 1339 aa12.05□□□□□ -0.48
HDAC9-219ENST00000461159 TTC37Q6PGP7 1564 aa12.05□□□□□ -0.48
HDAC9-219ENST00000461159 ASXL2Q76L83 1435 aa12.05□□□□□ -0.48
HDAC9-219ENST00000461159 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.04□□□□□ -0.48
HDAC9-219ENST00000461159 CDC42BPAQ5VT25 1732 aa12.04□□□□□ -0.48
HDAC9-219ENST00000461159 KLHL34Q8N239 644 aa12.04□□□□□ -0.48
HDAC9-219ENST00000461159 SALL2Q9Y467 1007 aaPredicted RBP12.03□□□□□ -0.48
HDAC9-219ENST00000461159 CAMSAP2Q08AD1 1489 aa12.03□□□□□ -0.48
HDAC9-219ENST00000461159 ABCC5O15440 1437 aa12.01□□□□□ -0.49
HDAC9-219ENST00000461159 WDR7Q9Y4E6 1490 aa12.01□□□□□ -0.49
HDAC9-219ENST00000461159 NAIPQ13075 1403 aa12.01□□□□□ -0.49
HDAC9-219ENST00000461159 ARHGAP5Q13017 1502 aa12.01□□□□□ -0.49
HDAC9-219ENST00000461159 DAPK1P53355 1430 aa12□□□□□ -0.49
HDAC9-219ENST00000461159 KDM6BO15054 1643 aa12□□□□□ -0.49
HDAC9-219ENST00000461159 PLPPR3Q6T4P5 718 aa11.99□□□□□ -0.49
HDAC9-219ENST00000461159 CDC42BPBQ9Y5S2 1711 aa11.99□□□□□ -0.49
HDAC9-219ENST00000461159 HFM1A2PYH4 1435 aa11.99□□□□□ -0.49
HDAC9-219ENST00000461159 ITSN2Q9NZM3 1697 aa11.98□□□□□ -0.49
HDAC9-219ENST00000461159 PDIA4P13667 645 aaKnown RBP11.98□□□□□ -0.49
HDAC9-219ENST00000461159 TRIM52Q96A61 297 aa11.98□□□□□ -0.49
HDAC9-219ENST00000461159 PHF23Q9BUL5 403 aaPredicted RBP11.97□□□□□ -0.49
HDAC9-219ENST00000461159 TSPY4P0CV99 314 aa11.97□□□□□ -0.49
HDAC9-219ENST00000461159 TSPY10P0CW01 314 aa11.97□□□□□ -0.49
HDAC9-219ENST00000461159 EFCAB2Q5VUJ9 269 aa11.97□□□□□ -0.49
HDAC9-219ENST00000461159 AFAP1Q8N556 730 aa11.97□□□□□ -0.49
HDAC9-219ENST00000461159 DNMT1P26358 1616 aaKnown RBP11.97□□□□□ -0.49
HDAC9-219ENST00000461159 MAPKBP1O60336 1514 aa11.96□□□□□ -0.5
HDAC9-219ENST00000461159 SAMD9LQ8IVG5 1584 aa11.95□□□□□ -0.5
HDAC9-219ENST00000461159 TSHZ2Q9NRE2 1034 aa11.95□□□□□ -0.5
HDAC9-219ENST00000461159 PLCH2O75038 1416 aa11.95□□□□□ -0.5
HDAC9-219ENST00000461159 SYCP2Q9BX26 1530 aa11.95□□□□□ -0.5
HDAC9-219ENST00000461159 FOXD1Q16676 465 aa11.94□□□□□ -0.5
HDAC9-219ENST00000461159 SIN3AQ96ST3 1273 aa11.94□□□□□ -0.5
HDAC9-219ENST00000461159 PREX2Q70Z35 1606 aa11.94□□□□□ -0.5
HDAC9-219ENST00000461159 FAM69CQ0P6D2 419 aa11.94□□□□□ -0.5
HDAC9-219ENST00000461159 ARHGEF12Q9NZN5 1544 aa11.93□□□□□ -0.5
HDAC9-219ENST00000461159 MYO5CQ9NQX4 1742 aa11.93□□□□□ -0.5
HDAC9-219ENST00000461159 PDE4CQ08493 712 aa11.93□□□□□ -0.5
HDAC9-219ENST00000461159 MBD5Q9P267 1494 aa11.93□□□□□ -0.5
HDAC9-219ENST00000461159 AKNAQ7Z591 1439 aa11.93□□□□□ -0.5
HDAC9-219ENST00000461159 NCOA1Q15788 1441 aa11.91□□□□□ -0.5
HDAC9-219ENST00000461159 C9orf84Q5VXU9 1444 aa11.91□□□□□ -0.5
HDAC9-219ENST00000461159 CD109Q6YHK3 1445 aa11.91□□□□□ -0.5
HDAC9-219ENST00000461159 TRAPPC8Q9Y2L5 1435 aa11.91□□□□□ -0.5
HDAC9-219ENST00000461159 FANCAO15360 1455 aa11.91□□□□□ -0.5
HDAC9-219ENST00000461159 CCDC136Q96JN2 1154 aa11.9□□□□□ -0.5
HDAC9-219ENST00000461159 GCC2Q8IWJ2 1684 aa11.9□□□□□ -0.51
HDAC9-219ENST00000461159 DENND4BO75064 1496 aaPredicted RBP11.89□□□□□ -0.51
HDAC9-219ENST00000461159 ROCK1Q13464 1354 aa11.89□□□□□ -0.51
HDAC9-219ENST00000461159 CROCC2H7BZ55 1655 aa11.88□□□□□ -0.51
HDAC9-219ENST00000461159 RAPGEF3O95398 923 aa11.88□□□□□ -0.51
HDAC9-219ENST00000461159 ANKRD30AQ9BXX3 1397 aa11.88□□□□□ -0.51
HDAC9-219ENST00000461159 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.88□□□□□ -0.51
HDAC9-219ENST00000461159 SUPT16HQ9Y5B9 1047 aaKnown RBP11.88□□□□□ -0.51
HDAC9-219ENST00000461159 SCAPERQ9BY12 1400 aa11.88□□□□□ -0.51
HDAC9-219ENST00000461159 CCDC141Q6ZP82 1450 aa11.88□□□□□ -0.51
HDAC9-219ENST00000461159 TIMELESSQ9UNS1 1208 aa11.87□□□□□ -0.51
HDAC9-219ENST00000461159 KIF15Q9NS87 1388 aa11.87□□□□□ -0.51
HDAC9-219ENST00000461159 ABCA9Q8IUA7 1624 aa11.87□□□□□ -0.51
HDAC9-219ENST00000461159 ADGRL1O94910 1474 aa11.86□□□□□ -0.51
HDAC9-219ENST00000461159 SPAG9O60271 1321 aaKnown RBP11.85□□□□□ -0.51
HDAC9-219ENST00000461159 MPHOSPH9Q99550 1183 aa11.85□□□□□ -0.51
HDAC9-219ENST00000461159 ANKRD50Q9ULJ7 1429 aa11.85□□□□□ -0.51
HDAC9-219ENST00000461159 SLC4A1APQ9BWU0 796 aaKnown RBP11.85□□□□□ -0.51
HDAC9-219ENST00000461159 ADGRL2O95490 1459 aa11.84□□□□□ -0.51
HDAC9-219ENST00000461159 TSPOAP1O95153 1857 aa11.84□□□□□ -0.51
HDAC9-219ENST00000461159 RSPH4AQ5TD94 716 aa11.84□□□□□ -0.51
HDAC9-219ENST00000461159 KIAA1107Q9UPP5 1409 aa11.84□□□□□ -0.51
HDAC9-219ENST00000461159 ARHGEF5Q12774 1597 aa11.84□□□□□ -0.51
HDAC9-219ENST00000461159 ABCC1P33527 1531 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms