RNA–Protein interactions for RNA: ENST00000459927.5

GPNMB-204, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 577 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-204ENST00000459927 HSPA2P54652 639 aa20.31■□□□□ 0.84
GPNMB-204ENST00000459927 ARHGEF40Q8TER5 1519 aa20.31■□□□□ 0.84
GPNMB-204ENST00000459927 AFAP1Q8N556 730 aa20.3■□□□□ 0.84
GPNMB-204ENST00000459927 ZMYM4Q5VZL5 1548 aa20.3■□□□□ 0.84
GPNMB-204ENST00000459927 LMTK3Q96Q04 1460 aa20.3■□□□□ 0.84
GPNMB-204ENST00000459927 HECW1Q76N89 1606 aa20.29■□□□□ 0.84
GPNMB-204ENST00000459927 ZFYVE16Q7Z3T8 1539 aa20.28■□□□□ 0.84
GPNMB-204ENST00000459927 RIMS1Q86UR5 1692 aaKnown RBP20.27■□□□□ 0.84
GPNMB-204ENST00000459927 PCF11O94913 1555 aaKnown RBP20.27■□□□□ 0.84
GPNMB-204ENST00000459927 ATP10AO60312 1499 aa20.27■□□□□ 0.84
GPNMB-204ENST00000459927 SIGLEC1Q9BZZ2 1709 aa20.24■□□□□ 0.83
GPNMB-204ENST00000459927 CEBPAP49715 358 aaPredicted RBP20.23■□□□□ 0.83
GPNMB-204ENST00000459927 TROQ12816 1431 aaPredicted RBP20.23■□□□□ 0.83
GPNMB-204ENST00000459927 MYT1LQ9UL68 1186 aa20.22■□□□□ 0.83
GPNMB-204ENST00000459927 MYO5CQ9NQX4 1742 aa20.19■□□□□ 0.82
GPNMB-204ENST00000459927 KIF14Q15058 1648 aa20.18■□□□□ 0.82
GPNMB-204ENST00000459927 CLIP1P30622 1438 aa20.18■□□□□ 0.82
GPNMB-204ENST00000459927 C9orf84Q5VXU9 1444 aa20.18■□□□□ 0.82
GPNMB-204ENST00000459927 ZNF518AQ6AHZ1 1483 aa20.15■□□□□ 0.82
GPNMB-204ENST00000459927 ARHGAP5Q13017 1502 aa20.15■□□□□ 0.82
GPNMB-204ENST00000459927 ARHGEF12Q9NZN5 1544 aa20.14■□□□□ 0.81
GPNMB-204ENST00000459927 CASKIN1Q8WXD9 1431 aa20.13■□□□□ 0.81
GPNMB-204ENST00000459927 CERKQ8TCT0 537 aa20.13■□□□□ 0.81
GPNMB-204ENST00000459927 LRRIQ1Q96JM4 1722 aa20.13■□□□□ 0.81
GPNMB-204ENST00000459927 FER1L4A9Z1Z3 1794 aa20.12■□□□□ 0.81
GPNMB-204ENST00000459927 CDC42BPBQ9Y5S2 1711 aa20.1■□□□□ 0.81
GPNMB-204ENST00000459927 SETD1BQ9UPS6 1966 aaKnown RBP20.1■□□□□ 0.81
GPNMB-204ENST00000459927 MLH3Q9UHC1 1453 aa20.09■□□□□ 0.81
GPNMB-204ENST00000459927 TRAPPC8Q9Y2L5 1435 aa20.09■□□□□ 0.81
GPNMB-204ENST00000459927 KDM5CP41229 1560 aa20.08■□□□□ 0.81
GPNMB-204ENST00000459927 DMRT2Q9Y5R5 561 aa20.08■□□□□ 0.81
GPNMB-204ENST00000459927 ZNF777Q9ULD5 760 aaPredicted RBP20.07■□□□□ 0.8
GPNMB-204ENST00000459927 ESF1Q9H501 851 aaKnown RBP20.06■□□□□ 0.8
GPNMB-204ENST00000459927 CCDC18Q5T9S5 1454 aa20.05■□□□□ 0.8
GPNMB-204ENST00000459927 HNRNPMP52272 730 aaKnown RBP eCLIP20.04■□□□□ 0.8
GPNMB-204ENST00000459927 DIP2CQ9Y2E4 1556 aa20.02■□□□□ 0.8
GPNMB-204ENST00000459927 REREQ9P2R6 1566 aa20■□□□□ 0.79
GPNMB-204ENST00000459927 AGLP35573 1532 aa19.99■□□□□ 0.79
GPNMB-204ENST00000459927 PREX1Q8TCU6 1659 aa19.99■□□□□ 0.79
GPNMB-204ENST00000459927 PREX2Q70Z35 1606 aa19.98■□□□□ 0.79
GPNMB-204ENST00000459927 CFDP1Q9UEE9 299 aaPredicted RBP19.98■□□□□ 0.79
GPNMB-204ENST00000459927 UHRF1BP1Q6BDS2 1440 aa19.98■□□□□ 0.79
GPNMB-204ENST00000459927 ABCC1P33527 1531 aa19.97■□□□□ 0.79
GPNMB-204ENST00000459927 GPATCH8Q9UKJ3 1502 aaKnown RBP19.97■□□□□ 0.79
GPNMB-204ENST00000459927 ABCA6Q8N139 1617 aa19.97■□□□□ 0.79
GPNMB-204ENST00000459927 SPAG9O60271 1321 aaKnown RBP19.97■□□□□ 0.79
GPNMB-204ENST00000459927 FYCO1Q9BQS8 1478 aa19.96■□□□□ 0.79
GPNMB-204ENST00000459927 CDC42BPAQ5VT25 1732 aa19.96■□□□□ 0.79
GPNMB-204ENST00000459927 STRCQ7RTU9 1775 aa19.95■□□□□ 0.78
GPNMB-204ENST00000459927 KIDINS220Q9ULH0 1771 aa19.95■□□□□ 0.78
GPNMB-204ENST00000459927 ITSN2Q9NZM3 1697 aa19.94■□□□□ 0.78
GPNMB-204ENST00000459927 ZMYM3Q14202 1370 aa19.93■□□□□ 0.78
GPNMB-204ENST00000459927 C3P01024 1663 aa19.92■□□□□ 0.78
GPNMB-204ENST00000459927 CNTLNQ9NXG0 1405 aa19.91■□□□□ 0.78
GPNMB-204ENST00000459927 KIAA1107Q9UPP5 1409 aa19.91■□□□□ 0.78
GPNMB-204ENST00000459927 SAMD9LQ8IVG5 1584 aa19.91■□□□□ 0.78
GPNMB-204ENST00000459927 CCNB3Q8WWL7 1395 aa19.9■□□□□ 0.78
GPNMB-204ENST00000459927 PTPRTO14522 1441 aa19.89■□□□□ 0.77
GPNMB-204ENST00000459927 GGT6Q6P531 493 aa19.88■□□□□ 0.77
GPNMB-204ENST00000459927 ZNF644Q9H582 1327 aaPredicted RBP19.87■□□□□ 0.77
GPNMB-204ENST00000459927 MTUS2Q5JR59 1369 aa19.86■□□□□ 0.77
GPNMB-204ENST00000459927 PPP6R1Q9UPN7 881 aa19.86■□□□□ 0.77
GPNMB-204ENST00000459927 SYCP2Q9BX26 1530 aa19.85■□□□□ 0.77
GPNMB-204ENST00000459927 PLEKHH2Q8IVE3 1493 aa19.85■□□□□ 0.77
GPNMB-204ENST00000459927 NPATQ14207 1427 aa19.83■□□□□ 0.76
GPNMB-204ENST00000459927 NCKAP5LQ9HCH0 1330 aa19.82■□□□□ 0.76
GPNMB-204ENST00000459927 SUPT6HQ7KZ85 1726 aaKnown RBP19.82■□□□□ 0.76
GPNMB-204ENST00000459927 A2MP01023 1474 aa19.81■□□□□ 0.76
GPNMB-204ENST00000459927 NCOA1Q15788 1441 aa19.79■□□□□ 0.76
GPNMB-204ENST00000459927 ATP7AQ04656 1500 aa19.79■□□□□ 0.76
GPNMB-204ENST00000459927 MBD5Q9P267 1494 aa19.77■□□□□ 0.76
GPNMB-204ENST00000459927 MROH2AA6NES4 1674 aa19.76■□□□□ 0.75
GPNMB-204ENST00000459927 PKD2Q13563 968 aa19.76■□□□□ 0.75
GPNMB-204ENST00000459927 RSPH4AQ5TD94 716 aa19.76■□□□□ 0.75
GPNMB-204ENST00000459927 LTBP4Q8N2S1 1624 aa19.76■□□□□ 0.75
GPNMB-204ENST00000459927 DHX29Q7Z478 1369 aaKnown RBP19.75■□□□□ 0.75
GPNMB-204ENST00000459927 CAMSAP1Q5T5Y3 1602 aa19.75■□□□□ 0.75
GPNMB-204ENST00000459927 RTEL1-TNFRSF6BF6WH68 1400 aa19.75■□□□□ 0.75
GPNMB-204ENST00000459927 PTPRKQ15262 1439 aa19.75■□□□□ 0.75
GPNMB-204ENST00000459927 PLXNC1O60486 1568 aa19.73■□□□□ 0.75
GPNMB-204ENST00000459927 INO80Q9ULG1 1556 aaPredicted RBP19.73■□□□□ 0.75
GPNMB-204ENST00000459927 CLTCQ00610 1675 aaKnown RBP19.72■□□□□ 0.75
GPNMB-204ENST00000459927 KIF3BO15066 747 aa19.72■□□□□ 0.75
GPNMB-204ENST00000459927 CEP162Q5TB80 1403 aa19.72■□□□□ 0.75
GPNMB-204ENST00000459927 FBXO31Q5XUX0 539 aaPredicted RBP19.7■□□□□ 0.74
GPNMB-204ENST00000459927 ZNF335Q9H4Z2 1342 aaPredicted RBP19.7■□□□□ 0.74
GPNMB-204ENST00000459927 TIAM1Q13009 1591 aa19.7■□□□□ 0.74
GPNMB-204ENST00000459927 ILDR2Q71H61 639 aa19.69■□□□□ 0.74
GPNMB-204ENST00000459927 DISP3Q9P2K9 1392 aa19.69■□□□□ 0.74
GPNMB-204ENST00000459927 TSPY4P0CV99 314 aa19.67■□□□□ 0.74
GPNMB-204ENST00000459927 TSPY10P0CW01 314 aa19.67■□□□□ 0.74
GPNMB-204ENST00000459927 ADGBQ8N7X0 1667 aa19.67■□□□□ 0.74
GPNMB-204ENST00000459927 IQSEC2Q5JU85 1478 aa19.67■□□□□ 0.74
GPNMB-204ENST00000459927 EHBP1L1Q8N3D4 1523 aa19.66■□□□□ 0.74
GPNMB-204ENST00000459927 LOC105371045A0A1W2PR82 267 aa19.66■□□□□ 0.74
GPNMB-204ENST00000459927 WASHC2CQ9Y4E1 1318 aa19.66■□□□□ 0.74
GPNMB-204ENST00000459927 PLA2R1Q13018 1463 aa19.65■□□□□ 0.74
GPNMB-204ENST00000459927 NCOA2Q15596 1464 aa19.64■□□□□ 0.73
GPNMB-204ENST00000459927 TCOF1Q13428 1488 aaKnown RBP19.63■□□□□ 0.73
GPNMB-204ENST00000459927 UBAP1LF5GYI3 381 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms