RNA–Protein interactions for RNA: ENST00000454043.1

LINC00299-204, long intergenic non-protein coding RNA 299, humanhuman

TSL 4

Gene LINC00299, Length 591 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00299-204ENST00000454043 WIZO95785 1651 aa13.04□□□□□ -0.32
LINC00299-204ENST00000454043 SMARCA2P51531 1590 aa13.03□□□□□ -0.32
LINC00299-204ENST00000454043 PEG3Q9GZU2 1588 aa13.03□□□□□ -0.32
LINC00299-204ENST00000454043 G3V3G9 751 aa13.02□□□□□ -0.33
LINC00299-204ENST00000454043 CHGAP10645 457 aaKnown RBP13.02□□□□□ -0.33
LINC00299-204ENST00000454043 C3orf67Q6ZVT6 689 aa13.02□□□□□ -0.33
LINC00299-204ENST00000454043 EIF4G1Q04637 1599 aaKnown RBP13.02□□□□□ -0.33
LINC00299-204ENST00000454043 ATAD2BQ9ULI0 1458 aa12.99□□□□□ -0.33
LINC00299-204ENST00000454043 TOP2AP11388 1531 aaKnown RBP12.98□□□□□ -0.33
LINC00299-204ENST00000454043 DNAJC5Q9H3Z4 198 aa12.98□□□□□ -0.33
LINC00299-204ENST00000454043 MICALL2Q8IY33 904 aa12.97□□□□□ -0.33
LINC00299-204ENST00000454043 FAM163AQ96GL9 167 aaPredicted RBP12.97□□□□□ -0.33
LINC00299-204ENST00000454043 AMER1Q5JTC6 1135 aaPredicted RBP12.95□□□□□ -0.34
LINC00299-204ENST00000454043 BAZ1BQ9UIG0 1483 aaKnown RBP12.94□□□□□ -0.34
LINC00299-204ENST00000454043 NCAPD3P42695 1498 aa12.93□□□□□ -0.34
LINC00299-204ENST00000454043 LCE2DQ5TA82 110 aaPredicted RBP12.92□□□□□ -0.34
LINC00299-204ENST00000454043 RTN4Q9NQC3 1192 aaKnown RBP12.91□□□□□ -0.34
LINC00299-204ENST00000454043 NKX1-1Q15270 411 aaPredicted RBP12.9□□□□□ -0.34
LINC00299-204ENST00000454043 SNPHO15079 494 aa12.89□□□□□ -0.35
LINC00299-204ENST00000454043 PPP1R37O75864 691 aa12.88□□□□□ -0.35
LINC00299-204ENST00000454043 TMEM92Q6UXU6 159 aa12.88□□□□□ -0.35
LINC00299-204ENST00000454043 HMGXB3Q12766 1538 aa12.88□□□□□ -0.35
LINC00299-204ENST00000454043 CCDC88BA6NC98 1476 aa12.85□□□□□ -0.35
LINC00299-204ENST00000454043 ST18O60284 1047 aa12.84□□□□□ -0.35
LINC00299-204ENST00000454043 CC2D2AQ9P2K1 1620 aa12.82□□□□□ -0.36
LINC00299-204ENST00000454043 POTEMA6NI47 508 aa12.81□□□□□ -0.36
LINC00299-204ENST00000454043 POTEGQ6S5H5 508 aa12.8□□□□□ -0.36
LINC00299-204ENST00000454043 HOXB3P14651 431 aaPredicted RBP12.78□□□□□ -0.36
LINC00299-204ENST00000454043 RYDENQ9NUL5 291 aaKnown RBP12.78□□□□□ -0.36
LINC00299-204ENST00000454043 GTPBP6O43824 516 aaPredicted RBP12.76□□□□□ -0.37
LINC00299-204ENST00000454043 KIF3CO14782 793 aa12.74□□□□□ -0.37
LINC00299-204ENST00000454043 C2orf72A6NCS6 295 aa12.71□□□□□ -0.37
LINC00299-204ENST00000454043 DOK7Q18PE1 504 aa12.69□□□□□ -0.38
LINC00299-204ENST00000454043 BBXQ8WY36 941 aaPredicted RBP12.68□□□□□ -0.38
LINC00299-204ENST00000454043 TMC2Q8TDI7 906 aa12.66□□□□□ -0.38
LINC00299-204ENST00000454043 ZNF710Q8N1W2 664 aa12.65□□□□□ -0.38
LINC00299-204ENST00000454043 MARVELD3Q96A59 401 aa12.64□□□□□ -0.39
LINC00299-204ENST00000454043 HOXB1P14653 301 aaPredicted RBP12.63□□□□□ -0.39
LINC00299-204ENST00000454043 PCDH10Q9P2E7 1040 aa12.63□□□□□ -0.39
LINC00299-204ENST00000454043 GPHNQ9NQX3 736 aaPredicted RBP12.62□□□□□ -0.39
LINC00299-204ENST00000454043 CADPSQ9ULU8 1353 aa12.61□□□□□ -0.39
LINC00299-204ENST00000454043 RIMBP2O15034 1052 aa12.61□□□□□ -0.39
LINC00299-204ENST00000454043 ZSWIM6Q9HCJ5 1215 aa12.61□□□□□ -0.39
LINC00299-204ENST00000454043 CFTRP13569 1480 aa12.6□□□□□ -0.39
LINC00299-204ENST00000454043 GPR153Q6NV75 609 aa12.6□□□□□ -0.39
LINC00299-204ENST00000454043 EMP3P54852 163 aa12.57□□□□□ -0.4
LINC00299-204ENST00000454043 FOXK1P85037 733 aa12.57□□□□□ -0.4
LINC00299-204ENST00000454043 SLC34A2O95436 690 aa12.56□□□□□ -0.4
LINC00299-204ENST00000454043 CDAN1Q8IWY9 1227 aa12.55□□□□□ -0.4
LINC00299-204ENST00000454043 CRISPLD2Q9H0B8 497 aa12.55□□□□□ -0.4
LINC00299-204ENST00000454043 POTEB3A0JP26 581 aa12.54□□□□□ -0.4
LINC00299-204ENST00000454043 ARSIQ5FYB1 569 aa12.54□□□□□ -0.4
LINC00299-204ENST00000454043 POTEBQ6S5H4 581 aa12.54□□□□□ -0.4
LINC00299-204ENST00000454043 DSG2Q14126 1118 aa12.53□□□□□ -0.4
LINC00299-204ENST00000454043 PLPP6Q8IY26 295 aa12.53□□□□□ -0.4
LINC00299-204ENST00000454043 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.53□□□□□ -0.4
LINC00299-204ENST00000454043 WRNQ14191 1432 aaPredicted RBP eCLIP12.53□□□□□ -0.4
LINC00299-204ENST00000454043 FAM205CA6NFA0 338 aa12.52□□□□□ -0.41
LINC00299-204ENST00000454043 PDE4AP27815 886 aa12.52□□□□□ -0.41
LINC00299-204ENST00000454043 SPRYD3Q8NCJ5 442 aa12.52□□□□□ -0.41
LINC00299-204ENST00000454043 NCKAP5LQ9HCH0 1330 aa12.51□□□□□ -0.41
LINC00299-204ENST00000454043 LAMC3Q9Y6N6 1575 aa12.49□□□□□ -0.41
LINC00299-204ENST00000454043 KHSRPQ92945 711 aaKnown RBP eCLIP12.49□□□□□ -0.41
LINC00299-204ENST00000454043 HS3ST6Q96QI5 342 aa12.49□□□□□ -0.41
LINC00299-204ENST00000454043 ABCC8Q09428 1581 aa12.47□□□□□ -0.41
LINC00299-204ENST00000454043 CADPS2Q86UW7 1296 aa12.47□□□□□ -0.41
LINC00299-204ENST00000454043 PCDHGA4Q9Y5G9 962 aa12.47□□□□□ -0.41
LINC00299-204ENST00000454043 PDS5BQ9NTI5 1447 aa12.46□□□□□ -0.41
LINC00299-204ENST00000454043 ERBB3P21860 1342 aa12.46□□□□□ -0.41
LINC00299-204ENST00000454043 PTCD2Q8WV60 388 aaKnown RBP12.46□□□□□ -0.41
LINC00299-204ENST00000454043 LARP6Q9BRS8 491 aaKnown RBP12.45□□□□□ -0.42
LINC00299-204ENST00000454043 PAXIP1Q6ZW49 1069 aaPredicted RBP12.44□□□□□ -0.42
LINC00299-204ENST00000454043 PRDM2Q13029 1718 aa12.44□□□□□ -0.42
LINC00299-204ENST00000454043 FANCD2Q9BXW9 1451 aa12.43□□□□□ -0.42
LINC00299-204ENST00000454043 PPP1R15BQ5SWA1 713 aa12.43□□□□□ -0.42
LINC00299-204ENST00000454043 CFAP44Q96MT7 982 aa12.42□□□□□ -0.42
LINC00299-204ENST00000454043 MFSD10Q14728 455 aa12.41□□□□□ -0.42
LINC00299-204ENST00000454043 EEA1Q15075 1411 aa12.4□□□□□ -0.42
LINC00299-204ENST00000454043 KDM4FA0A1W2PPD8 638 aa12.4□□□□□ -0.42
LINC00299-204ENST00000454043 ZNF316A6NFI3 1004 aaPredicted RBP12.4□□□□□ -0.42
LINC00299-204ENST00000454043 NUDT7P0C024 238 aa12.4□□□□□ -0.42
LINC00299-204ENST00000454043 VARS2Q5ST30 1063 aaKnown RBP12.39□□□□□ -0.43
LINC00299-204ENST00000454043 DDX27Q96GQ7 796 aaKnown RBP12.39□□□□□ -0.43
LINC00299-204ENST00000454043 TOP2BQ02880 1626 aa12.39□□□□□ -0.43
LINC00299-204ENST00000454043 NESP48681 1621 aa12.38□□□□□ -0.43
LINC00299-204ENST00000454043 OXER1Q8TDS5 423 aa12.38□□□□□ -0.43
LINC00299-204ENST00000454043 CEP164Q9UPV0 1460 aa12.38□□□□□ -0.43
LINC00299-204ENST00000454043 TBC1D12O60347 775 aa12.37□□□□□ -0.43
LINC00299-204ENST00000454043 SYNJ1O43426 1573 aa12.37□□□□□ -0.43
LINC00299-204ENST00000454043 FAM9AQ8IZU1 332 aaPredicted RBP12.36□□□□□ -0.43
LINC00299-204ENST00000454043 ZNF687Q8N1G0 1237 aa12.36□□□□□ -0.43
LINC00299-204ENST00000454043 KRTAP3-3Q9BYR6 98 aa12.35□□□□□ -0.43
LINC00299-204ENST00000454043 KRTAP3-2Q9BYR7 98 aa12.35□□□□□ -0.43
LINC00299-204ENST00000454043 BIVM-ERCC5R4GMW8 1640 aa12.35□□□□□ -0.43
LINC00299-204ENST00000454043 CUX1P39880 1505 aa12.34□□□□□ -0.43
LINC00299-204ENST00000454043 PLSCR2Q9NRY7 297 aa12.34□□□□□ -0.43
LINC00299-204ENST00000454043 LHX6Q9UPM6 363 aa12.34□□□□□ -0.43
LINC00299-204ENST00000454043 UPF1Q92900 1129 aaKnown RBP eCLIP12.31□□□□□ -0.44
LINC00299-204ENST00000454043 DNMBPQ6XZF7 1577 aa12.3□□□□□ -0.44
LINC00299-204ENST00000454043 SOGA1O94964 1423 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms