RNA–Protein interactions for RNA: ENST00000451716.5

COL27A1-202, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 2,865 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-202ENST00000451716 NUP160Q12769 1436 aa17.21■□□□□ 0.35
COL27A1-202ENST00000451716 KCNH8Q96L42 1107 aa17.2■□□□□ 0.34
COL27A1-202ENST00000451716 ZNF777Q9ULD5 760 aaPredicted RBP17.2■□□□□ 0.34
COL27A1-202ENST00000451716 CARMIL2Q6F5E8 1435 aa17.19■□□□□ 0.34
COL27A1-202ENST00000451716 DENND4BO75064 1496 aaPredicted RBP17.18■□□□□ 0.34
COL27A1-202ENST00000451716 DAPK1P53355 1430 aa17.18■□□□□ 0.34
COL27A1-202ENST00000451716 MPHOSPH9Q99550 1183 aa17.17■□□□□ 0.34
COL27A1-202ENST00000451716 CFDP1Q9UEE9 299 aaPredicted RBP17.17■□□□□ 0.34
COL27A1-202ENST00000451716 ABCC5O15440 1437 aa17.17■□□□□ 0.34
COL27A1-202ENST00000451716 TROQ12816 1431 aaPredicted RBP17.17■□□□□ 0.34
COL27A1-202ENST00000451716 GCC2Q8IWJ2 1684 aa17.16■□□□□ 0.34
COL27A1-202ENST00000451716 ANP32EQ9BTT0 268 aa17.14■□□□□ 0.33
COL27A1-202ENST00000451716 AKNAQ7Z591 1439 aa17.14■□□□□ 0.33
COL27A1-202ENST00000451716 KIF14Q15058 1648 aa17.13■□□□□ 0.33
COL27A1-202ENST00000451716 GPATCH8Q9UKJ3 1502 aaKnown RBP17.1■□□□□ 0.33
COL27A1-202ENST00000451716 PLEKHD1A6NEE1 506 aa17.1■□□□□ 0.33
COL27A1-202ENST00000451716 DNMT1P26358 1616 aaKnown RBP17.1■□□□□ 0.33
COL27A1-202ENST00000451716 KDM5BQ9UGL1 1544 aa17.09■□□□□ 0.33
COL27A1-202ENST00000451716 CAMSAP2Q08AD1 1489 aa17.09■□□□□ 0.33
COL27A1-202ENST00000451716 ROCK1Q13464 1354 aa17.09■□□□□ 0.33
COL27A1-202ENST00000451716 SLC4A1APQ9BWU0 796 aaKnown RBP17.07■□□□□ 0.32
COL27A1-202ENST00000451716 ATP10BO94823 1461 aa17.07■□□□□ 0.32
COL27A1-202ENST00000451716 L3MBTL2Q969R5 705 aa17.06■□□□□ 0.32
COL27A1-202ENST00000451716 ABCA8O94911 1581 aa17.05■□□□□ 0.32
COL27A1-202ENST00000451716 PTPRGP23470 1445 aa17.03■□□□□ 0.32
COL27A1-202ENST00000451716 NCOA1Q15788 1441 aa17.02■□□□□ 0.31
COL27A1-202ENST00000451716 ANKRD30BQ9BXX2 1392 aa17.01■□□□□ 0.31
COL27A1-202ENST00000451716 ITSN2Q9NZM3 1697 aa17.01■□□□□ 0.31
COL27A1-202ENST00000451716 ADCY10Q96PN6 1610 aa17■□□□□ 0.31
COL27A1-202ENST00000451716 HSPA5P11021 654 aaKnown RBP17■□□□□ 0.31
COL27A1-202ENST00000451716 CHD1O14646 1710 aa16.98■□□□□ 0.31
COL27A1-202ENST00000451716 ANP32CO43423 234 aa16.98■□□□□ 0.31
COL27A1-202ENST00000451716 HNRNPMP52272 730 aaKnown RBP eCLIP16.98■□□□□ 0.314e-8■■■□□ 16
COL27A1-202ENST00000451716 ABCC10Q5T3U5 1492 aa16.97■□□□□ 0.31
COL27A1-202ENST00000451716 NBPF8Q3BBV2 869 aa16.96■□□□□ 0.31
COL27A1-202ENST00000451716 CDC42BPAQ5VT25 1732 aa16.96■□□□□ 0.31
COL27A1-202ENST00000451716 DAXXQ9UER7 740 aaPredicted RBP16.95■□□□□ 0.3
COL27A1-202ENST00000451716 ANKRD30AQ9BXX3 1397 aa16.95■□□□□ 0.3
COL27A1-202ENST00000451716 PZPP20742 1482 aa16.95■□□□□ 0.3
COL27A1-202ENST00000451716 RPRD2Q5VT52 1461 aaKnown RBP16.94■□□□□ 0.3
COL27A1-202ENST00000451716 EIF5BO60841 1220 aaKnown RBP16.94■□□□□ 0.3
COL27A1-202ENST00000451716 EIF4G2P78344 907 aaKnown RBP eCLIP16.94■□□□□ 0.3
COL27A1-202ENST00000451716 WASHC2AQ641Q2 1341 aa16.93■□□□□ 0.3
COL27A1-202ENST00000451716 PKD2Q13563 968 aa16.93■□□□□ 0.3
COL27A1-202ENST00000451716 ANKRD50Q9ULJ7 1429 aa16.92■□□□□ 0.3
COL27A1-202ENST00000451716 TSPY4P0CV99 314 aa16.92■□□□□ 0.3
COL27A1-202ENST00000451716 TSPY10P0CW01 314 aa16.92■□□□□ 0.3
COL27A1-202ENST00000451716 ERCC6L2Q5T890 1561 aa16.92■□□□□ 0.3
COL27A1-202ENST00000451716 ADGRL2O95490 1459 aa16.91■□□□□ 0.3
COL27A1-202ENST00000451716 ADGBQ8N7X0 1667 aa16.91■□□□□ 0.3
COL27A1-202ENST00000451716 C9orf84Q5VXU9 1444 aa16.91■□□□□ 0.3
COL27A1-202ENST00000451716 CROCC2H7BZ55 1655 aa16.91■□□□□ 0.3
COL27A1-202ENST00000451716 TEX14Q8IWB6 1497 aa16.89■□□□□ 0.3
COL27A1-202ENST00000451716 C11orf95C9JLR9 678 aaPredicted RBP16.89■□□□□ 0.29
COL27A1-202ENST00000451716 ZNF326Q5BKZ1 582 aaKnown RBP16.89■□□□□ 0.29
COL27A1-202ENST00000451716 NUP155O75694 1391 aa16.88■□□□□ 0.29
COL27A1-202ENST00000451716 CCER2I3L3R5 266 aa16.87■□□□□ 0.29
COL27A1-202ENST00000451716 KIAA1107Q9UPP5 1409 aa16.86■□□□□ 0.29
COL27A1-202ENST00000451716 KIF15Q9NS87 1388 aa16.85■□□□□ 0.29
COL27A1-202ENST00000451716 SUPT16HQ9Y5B9 1047 aaKnown RBP16.84■□□□□ 0.29
COL27A1-202ENST00000451716 MBD5Q9P267 1494 aa16.84■□□□□ 0.29
COL27A1-202ENST00000451716 ANO8Q9HCE9 1232 aaPredicted RBP16.83■□□□□ 0.29
COL27A1-202ENST00000451716 SHROOM2Q13796 1616 aa16.82■□□□□ 0.28
COL27A1-202ENST00000451716 SHANK2Q9UPX8 1470 aa16.82■□□□□ 0.28
COL27A1-202ENST00000451716 SAMD9LQ8IVG5 1584 aa16.82■□□□□ 0.28
COL27A1-202ENST00000451716 CDC42BPBQ9Y5S2 1711 aa16.82■□□□□ 0.28
COL27A1-202ENST00000451716 TTC37Q6PGP7 1564 aa16.79■□□□□ 0.28
COL27A1-202ENST00000451716 CCDC7Q96M83 1385 aa16.78■□□□□ 0.28
COL27A1-202ENST00000451716 ARHGAP5Q13017 1502 aa16.78■□□□□ 0.28
COL27A1-202ENST00000451716 CCDC141Q6ZP82 1450 aa16.78■□□□□ 0.28
COL27A1-202ENST00000451716 PREX2Q70Z35 1606 aa16.78■□□□□ 0.28
COL27A1-202ENST00000451716 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.77■□□□□ 0.28
COL27A1-202ENST00000451716 ABCC2Q92887 1545 aa16.77■□□□□ 0.28
COL27A1-202ENST00000451716 SYCP2Q9BX26 1530 aa16.77■□□□□ 0.28
COL27A1-202ENST00000451716 KDM2AQ9Y2K7 1162 aa16.77■□□□□ 0.27
COL27A1-202ENST00000451716 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.76■□□□□ 0.271e-8■□□□□ 9
COL27A1-202ENST00000451716 ARHGEF5Q12774 1597 aa16.76■□□□□ 0.27
COL27A1-202ENST00000451716 SPATA31E1Q6ZUB1 1445 aa16.76■□□□□ 0.27
COL27A1-202ENST00000451716 POLR3GLQ9BT43 218 aa16.75■□□□□ 0.27
COL27A1-202ENST00000451716 KIF7Q2M1P5 1343 aa16.75■□□□□ 0.27
COL27A1-202ENST00000451716 CCDC184Q52MB2 194 aa16.75■□□□□ 0.27
COL27A1-202ENST00000451716 CNGB1Q14028 1251 aaPredicted RBP16.74■□□□□ 0.27
COL27A1-202ENST00000451716 CNTLNQ9NXG0 1405 aa16.74■□□□□ 0.27
COL27A1-202ENST00000451716 RSPH4AQ5TD94 716 aa16.72■□□□□ 0.27
COL27A1-202ENST00000451716 USP47Q96K76 1375 aa16.71■□□□□ 0.27
COL27A1-202ENST00000451716 DCAF11Q8TEB1 546 aa16.71■□□□□ 0.26
COL27A1-202ENST00000451716 BCANQ96GW7 911 aa16.71■□□□□ 0.26
COL27A1-202ENST00000451716 PLEKHG5O94827 1062 aa16.7■□□□□ 0.26
COL27A1-202ENST00000451716 HNRNPUQ00839 825 aaKnown RBP eCLIP16.7■□□□□ 0.261e-6■■□□□ 14.3
COL27A1-202ENST00000451716 CLASP1Q7Z460 1538 aa16.7■□□□□ 0.26
COL27A1-202ENST00000451716 PRKRIP1Q9H875 184 aaPredicted RBP16.69■□□□□ 0.26
COL27A1-202ENST00000451716 KDM5DQ9BY66 1539 aa16.69■□□□□ 0.26
COL27A1-202ENST00000451716 ARHGEF12Q9NZN5 1544 aa16.69■□□□□ 0.26
COL27A1-202ENST00000451716 FKBP8Q14318 412 aa16.68■□□□□ 0.26
COL27A1-202ENST00000451716 FAM135AQ9P2D6 1515 aa16.68■□□□□ 0.26
COL27A1-202ENST00000451716 RGL3Q3MIN7 710 aa16.67■□□□□ 0.26
COL27A1-202ENST00000451716 ZCCHC11Q5TAX3 1644 aaKnown RBP16.67■□□□□ 0.26
COL27A1-202ENST00000451716 UBE2Q2Q8WVN8 375 aa16.67■□□□□ 0.26
COL27A1-202ENST00000451716 CARD11Q9BXL7 1154 aa16.67■□□□□ 0.26
COL27A1-202ENST00000451716 MYO5CQ9NQX4 1742 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms