RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 KTN1Q86UP2 1357 aaKnown RBP9.87□□□□□ -0.83
NEDD9-204ENST00000448183 MORC1Q86VD1 984 aa9.87□□□□□ -0.83
NEDD9-204ENST00000448183 DRC7Q8IY82 874 aa9.87□□□□□ -0.83
NEDD9-204ENST00000448183 SLKQ9H2G2 1235 aaPredicted RBP9.87□□□□□ -0.83
NEDD9-204ENST00000448183 IPO9Q96P70 1041 aaKnown RBP9.87□□□□□ -0.83
NEDD9-204ENST00000448183 IPO8O15397 1037 aaKnown RBP9.86□□□□□ -0.83
NEDD9-204ENST00000448183 KIAA2012Q0VF49 1180 aa9.86□□□□□ -0.83
NEDD9-204ENST00000448183 ARID4BQ4LE39 1312 aaPredicted RBP9.86□□□□□ -0.83
NEDD9-204ENST00000448183 RWDD1Q9H446 243 aaPredicted RBP9.86□□□□□ -0.83
NEDD9-204ENST00000448183 GZF1Q9H116 711 aaPredicted RBP9.85□□□□□ -0.83
NEDD9-204ENST00000448183 RALBP1Q15311 655 aa9.84□□□□□ -0.83
NEDD9-204ENST00000448183 VPS8Q8N3P4 1428 aa9.84□□□□□ -0.83
NEDD9-204ENST00000448183 TULP1O00294 542 aaPredicted RBP9.83□□□□□ -0.84
NEDD9-204ENST00000448183 GOLGA6L3A6NEY3 463 aa9.83□□□□□ -0.84
NEDD9-204ENST00000448183 SYAP1Q96A49 352 aaPredicted RBP9.82□□□□□ -0.84
NEDD9-204ENST00000448183 LMOD2Q6P5Q4 547 aa9.82□□□□□ -0.84
NEDD9-204ENST00000448183 KIAA1211Q6ZU35 1233 aa9.82□□□□□ -0.84
NEDD9-204ENST00000448183 SRPK2P78362 688 aaKnown RBP9.81□□□□□ -0.84
NEDD9-204ENST00000448183 PMFBP1Q8TBY8 1022 aa9.81□□□□□ -0.84
NEDD9-204ENST00000448183 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.81□□□□□ -0.84
NEDD9-204ENST00000448183 PKD2Q13563 968 aa9.8□□□□□ -0.84
NEDD9-204ENST00000448183 KANK1Q14678 1352 aa9.8□□□□□ -0.84
NEDD9-204ENST00000448183 SOGA1O94964 1423 aa9.8□□□□□ -0.84
NEDD9-204ENST00000448183 CARMIL1Q5VZK9 1371 aa9.8□□□□□ -0.84
NEDD9-204ENST00000448183 APBB1O00213 710 aa9.8□□□□□ -0.84
NEDD9-204ENST00000448183 ARHGAP35Q9NRY4 1499 aa9.79□□□□□ -0.84
NEDD9-204ENST00000448183 RAB3GAP2Q9H2M9 1393 aa9.79□□□□□ -0.84
NEDD9-204ENST00000448183 GOLGA2Q08379 1002 aa9.79□□□□□ -0.84
NEDD9-204ENST00000448183 ITPRIPQ8IWB1 547 aa9.79□□□□□ -0.84
NEDD9-204ENST00000448183 CALD1Q05682 793 aaKnown RBP9.79□□□□□ -0.84
NEDD9-204ENST00000448183 PDE3BQ13370 1112 aa9.79□□□□□ -0.84
NEDD9-204ENST00000448183 USP35Q9P2H5 1018 aa9.79□□□□□ -0.84
NEDD9-204ENST00000448183 HTATSF1O43719 755 aaKnown RBP9.79□□□□□ -0.84
NEDD9-204ENST00000448183 U2AF1L5P0DN76 240 aaPredicted RBP9.79□□□□□ -0.84
NEDD9-204ENST00000448183 U2AF1Q01081 240 aaKnown RBP eCLIP9.79□□□□□ -0.841e-6■■□□□ 11.6
NEDD9-204ENST00000448183 RTF1Q92541 710 aaKnown RBP9.78□□□□□ -0.84
NEDD9-204ENST00000448183 MFAP1P55081 439 aaKnown RBP9.78□□□□□ -0.84
NEDD9-204ENST00000448183 KANK4Q5T7N3 995 aaPredicted RBP9.78□□□□□ -0.84
NEDD9-204ENST00000448183 AMER1Q5JTC6 1135 aaPredicted RBP9.77□□□□□ -0.85
NEDD9-204ENST00000448183 ARID3AQ99856 593 aa9.77□□□□□ -0.85
NEDD9-204ENST00000448183 GNL2Q13823 731 aaKnown RBP9.77□□□□□ -0.85
NEDD9-204ENST00000448183 FOXD1Q16676 465 aa9.77□□□□□ -0.85
NEDD9-204ENST00000448183 MPHOSPH9Q99550 1183 aa9.77□□□□□ -0.85
NEDD9-204ENST00000448183 PDS5BQ9NTI5 1447 aa9.76□□□□□ -0.85
NEDD9-204ENST00000448183 ERCC6Q03468 1493 aa9.76□□□□□ -0.85
NEDD9-204ENST00000448183 NLRP13Q86W25 1043 aa9.76□□□□□ -0.85
NEDD9-204ENST00000448183 TOP2AP11388 1531 aaKnown RBP9.76□□□□□ -0.85
NEDD9-204ENST00000448183 ROCK2O75116 1388 aaKnown RBP9.76□□□□□ -0.85
NEDD9-204ENST00000448183 HDGFL2Q7Z4V5 671 aaPredicted RBP9.75□□□□□ -0.85
NEDD9-204ENST00000448183 NPHP1O15259 732 aa9.75□□□□□ -0.85
NEDD9-204ENST00000448183 SOX12O15370 315 aa9.75□□□□□ -0.85
NEDD9-204ENST00000448183 SAFB2Q14151 953 aaKnown RBP eCLIP9.75□□□□□ -0.85
NEDD9-204ENST00000448183 CUX2O14529 1486 aa9.74□□□□□ -0.85
NEDD9-204ENST00000448183 HDGFP51858 240 aaKnown RBP9.74□□□□□ -0.85
NEDD9-204ENST00000448183 SMC4Q9NTJ3 1288 aa9.74□□□□□ -0.85
NEDD9-204ENST00000448183 CECR2Q9BXF3 1484 aa9.73□□□□□ -0.85
NEDD9-204ENST00000448183 TNNT3P45378 269 aaPredicted RBP9.73□□□□□ -0.85
NEDD9-204ENST00000448183 CENPJQ9HC77 1338 aaPredicted RBP9.73□□□□□ -0.85
NEDD9-204ENST00000448183 HMMRO75330 724 aa9.72□□□□□ -0.85
NEDD9-204ENST00000448183 PRKCSHP14314 528 aaPredicted RBP9.72□□□□□ -0.85
NEDD9-204ENST00000448183 TPM4P67936 248 aa9.72□□□□□ -0.85
NEDD9-204ENST00000448183 CSPP1Q1MSJ5 1256 aa9.72□□□□□ -0.85
NEDD9-204ENST00000448183 CHMP4AQ9BY43 222 aa9.72□□□□□ -0.85
NEDD9-204ENST00000448183 CLUAP1Q96AJ1 413 aa9.72□□□□□ -0.85
NEDD9-204ENST00000448183 RSPH6AQ9H0K4 717 aa9.72□□□□□ -0.85
NEDD9-204ENST00000448183 FMN1Q68DA7 1419 aa9.72□□□□□ -0.85
NEDD9-204ENST00000448183 DDX11L8A8MPP1 907 aa9.72□□□□□ -0.85
NEDD9-204ENST00000448183 L3MBTL2Q969R5 705 aa9.72□□□□□ -0.85
NEDD9-204ENST00000448183 HSP90AA2PQ14568 343 aaPredicted RBP9.72□□□□□ -0.85
NEDD9-204ENST00000448183 NUP155O75694 1391 aa9.72□□□□□ -0.85
NEDD9-204ENST00000448183 PHLDB1Q86UU1 1377 aa9.71□□□□□ -0.85
NEDD9-204ENST00000448183 PDE4AP27815 886 aa9.71□□□□□ -0.86
NEDD9-204ENST00000448183 STK31Q9BXU1 1019 aa9.71□□□□□ -0.86
NEDD9-204ENST00000448183 PHF14O94880 888 aa9.7□□□□□ -0.86
NEDD9-204ENST00000448183 GSE1Q14687 1217 aa9.7□□□□□ -0.86
NEDD9-204ENST00000448183 CCDC34Q96HJ3 373 aa9.7□□□□□ -0.86
NEDD9-204ENST00000448183 STK26Q9P289 416 aa9.7□□□□□ -0.86
NEDD9-204ENST00000448183 EIF4G1Q04637 1599 aaKnown RBP9.7□□□□□ -0.86
NEDD9-204ENST00000448183 ST18O60284 1047 aa9.7□□□□□ -0.86
NEDD9-204ENST00000448183 CENPQQ7L2Z9 268 aaPredicted RBP9.7□□□□□ -0.86
NEDD9-204ENST00000448183 FAM161AQ3B820 660 aa9.7□□□□□ -0.86
NEDD9-204ENST00000448183 HDAC5Q9UQL6 1122 aa9.7□□□□□ -0.86
NEDD9-204ENST00000448183 MROH2BQ7Z745 1585 aa9.69□□□□□ -0.86
NEDD9-204ENST00000448183 TRIM6-TRIM34B2RNG4 842 aa9.69□□□□□ -0.86
NEDD9-204ENST00000448183 FOXD4L1Q9NU39 408 aa9.69□□□□□ -0.86
NEDD9-204ENST00000448183 SMARCA4P51532 1647 aa9.69□□□□□ -0.86
NEDD9-204ENST00000448183 EIF3AQ14152 1382 aaKnown RBP9.69□□□□□ -0.86
NEDD9-204ENST00000448183 FANCIQ9NVI1 1328 aa9.69□□□□□ -0.86
NEDD9-204ENST00000448183 ANKRD30AQ9BXX3 1397 aa9.69□□□□□ -0.86
NEDD9-204ENST00000448183 ABCC8Q09428 1581 aa9.68□□□□□ -0.86
NEDD9-204ENST00000448183 GPATCH3Q96I76 525 aa9.68□□□□□ -0.86
NEDD9-204ENST00000448183 SPAG9O60271 1321 aaKnown RBP9.68□□□□□ -0.86
NEDD9-204ENST00000448183 CCDC146Q8IYE0 955 aa9.68□□□□□ -0.86
NEDD9-204ENST00000448183 GGT6Q6P531 493 aa9.67□□□□□ -0.86
NEDD9-204ENST00000448183 GOLGA6L1Q8N7Z2 621 aa9.67□□□□□ -0.86
NEDD9-204ENST00000448183 MYBBP1AQ9BQG0 1328 aaKnown RBP9.67□□□□□ -0.86
NEDD9-204ENST00000448183 KIF15Q9NS87 1388 aa9.67□□□□□ -0.86
NEDD9-204ENST00000448183 SKOR2Q2VWA4 1001 aaPredicted RBP9.67□□□□□ -0.86
NEDD9-204ENST00000448183 NOC3LQ8WTT2 800 aaKnown RBP9.66□□□□□ -0.86
NEDD9-204ENST00000448183 DDX49Q9Y6V7 483 aaKnown RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms