RNA–Protein interactions for RNA: ENST00000444867.1

SEMA3D-202, Transcript of semaphorin 3D, humanhuman

TSL 1 (best) BASIC

Gene SEMA3D, Length 1,605 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3D-202ENST00000444867 ACIN1Q9UKV3 1341 aaKnown RBP27.56■■■□□ 2
SEMA3D-202ENST00000444867 ABCC5O15440 1437 aa27.55■■■□□ 2
SEMA3D-202ENST00000444867 CFDP1Q9UEE9 299 aaPredicted RBP27.54■■■□□ 2
SEMA3D-202ENST00000444867 CROCC2H7BZ55 1655 aa27.53■■■□□ 2
SEMA3D-202ENST00000444867 ADGBQ8N7X0 1667 aa27.52■■■□□ 2
SEMA3D-202ENST00000444867 UHRF1BP1LA0JNW5 1464 aa27.51■■□□□ 1.99
SEMA3D-202ENST00000444867 RIMBP3CA6NJZ7 1639 aa27.5■■□□□ 1.99
SEMA3D-202ENST00000444867 RIMBP3BA6NNM3 1639 aa27.5■■□□□ 1.99
SEMA3D-202ENST00000444867 RIMBP3Q9UFD9 1639 aa27.5■■□□□ 1.99
SEMA3D-202ENST00000444867 TIMELESSQ9UNS1 1208 aa27.49■■□□□ 1.99
SEMA3D-202ENST00000444867 CHIC2Q9UKJ5 165 aa27.48■■□□□ 1.99
SEMA3D-202ENST00000444867 ZNF644Q9H582 1327 aaPredicted RBP27.47■■□□□ 1.99
SEMA3D-202ENST00000444867 RRP7BPQ9NSQ0 103 aa27.47■■□□□ 1.99
SEMA3D-202ENST00000444867 PREX2Q70Z35 1606 aa27.44■■□□□ 1.98
SEMA3D-202ENST00000444867 ADGRL2O95490 1459 aa27.43■■□□□ 1.98
SEMA3D-202ENST00000444867 KDM6BO15054 1643 aa27.43■■□□□ 1.98
SEMA3D-202ENST00000444867 DIEXFQ68CQ4 756 aaKnown RBP27.41■■□□□ 1.98
SEMA3D-202ENST00000444867 ZCCHC11Q5TAX3 1644 aaKnown RBP27.41■■□□□ 1.98
SEMA3D-202ENST00000444867 SHANK2Q9UPX8 1470 aa27.39■■□□□ 1.98
SEMA3D-202ENST00000444867 CDC42BPBQ9Y5S2 1711 aa27.39■■□□□ 1.98
SEMA3D-202ENST00000444867 KDM5BQ9UGL1 1544 aa27.39■■□□□ 1.97
SEMA3D-202ENST00000444867 ARHGEF5Q12774 1597 aa27.38■■□□□ 1.97
SEMA3D-202ENST00000444867 SIN3AQ96ST3 1273 aa27.34■■□□□ 1.97
SEMA3D-202ENST00000444867 ZNF777Q9ULD5 760 aaPredicted RBP27.34■■□□□ 1.97
SEMA3D-202ENST00000444867 MYO5CQ9NQX4 1742 aa27.34■■□□□ 1.97
SEMA3D-202ENST00000444867 NCOA1Q15788 1441 aa27.34■■□□□ 1.97
SEMA3D-202ENST00000444867 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.33■■□□□ 1.97
SEMA3D-202ENST00000444867 TTC37Q6PGP7 1564 aa27.32■■□□□ 1.96
SEMA3D-202ENST00000444867 SAMD9LQ8IVG5 1584 aa27.31■■□□□ 1.96
SEMA3D-202ENST00000444867 ANKRD30AQ9BXX3 1397 aa27.31■■□□□ 1.96
SEMA3D-202ENST00000444867 NEUROD1Q13562 356 aa27.29■■□□□ 1.96
SEMA3D-202ENST00000444867 TRIM52Q96A61 297 aa27.27■■□□□ 1.96
SEMA3D-202ENST00000444867 DENND4BO75064 1496 aaPredicted RBP27.26■■□□□ 1.96
SEMA3D-202ENST00000444867 C9orf84Q5VXU9 1444 aa27.25■■□□□ 1.95
SEMA3D-202ENST00000444867 MBD5Q9P267 1494 aa27.24■■□□□ 1.95
SEMA3D-202ENST00000444867 RSPH4AQ5TD94 716 aa27.24■■□□□ 1.95
SEMA3D-202ENST00000444867 PLEKHH2Q8IVE3 1493 aa27.23■■□□□ 1.95
SEMA3D-202ENST00000444867 ARHGAP5Q13017 1502 aa27.23■■□□□ 1.95
SEMA3D-202ENST00000444867 CYB5RLQ6IPT4 315 aa27.23■■□□□ 1.95
SEMA3D-202ENST00000444867 MPHOSPH9Q99550 1183 aa27.23■■□□□ 1.95
SEMA3D-202ENST00000444867 CCDC141Q6ZP82 1450 aa27.22■■□□□ 1.95
SEMA3D-202ENST00000444867 TONSLQ96HA7 1378 aa27.22■■□□□ 1.95
SEMA3D-202ENST00000444867 MAST1Q9Y2H9 1570 aa27.19■■□□□ 1.94
SEMA3D-202ENST00000444867 TSPY4P0CV99 314 aa27.19■■□□□ 1.94
SEMA3D-202ENST00000444867 TSPY10P0CW01 314 aa27.19■■□□□ 1.94
SEMA3D-202ENST00000444867 PPP1R15AO75807 674 aaPredicted RBP27.18■■□□□ 1.94
SEMA3D-202ENST00000444867 KIAA1107Q9UPP5 1409 aa27.17■■□□□ 1.94
SEMA3D-202ENST00000444867 PLCH2O75038 1416 aa27.15■■□□□ 1.94
SEMA3D-202ENST00000444867 ANKRD50Q9ULJ7 1429 aa27.15■■□□□ 1.94
SEMA3D-202ENST00000444867 ARAP3Q8WWN8 1544 aa27.15■■□□□ 1.94
SEMA3D-202ENST00000444867 SYCP2Q9BX26 1530 aa27.14■■□□□ 1.93
SEMA3D-202ENST00000444867 HNRNPMP52272 730 aaKnown RBP eCLIP27.12■■□□□ 1.93
SEMA3D-202ENST00000444867 PZPP20742 1482 aa27.12■■□□□ 1.93
SEMA3D-202ENST00000444867 WDR7Q9Y4E6 1490 aa27.11■■□□□ 1.93
SEMA3D-202ENST00000444867 KCNH8Q96L42 1107 aa27.09■■□□□ 1.93
SEMA3D-202ENST00000444867 KDM5DQ9BY66 1539 aa27.09■■□□□ 1.93
SEMA3D-202ENST00000444867 ANKRD30BQ9BXX2 1392 aa27.08■■□□□ 1.93
SEMA3D-202ENST00000444867 KIF15Q9NS87 1388 aa27.07■■□□□ 1.92
SEMA3D-202ENST00000444867 PLXNC1O60486 1568 aa27.07■■□□□ 1.92
SEMA3D-202ENST00000444867 SLC4A1APQ9BWU0 796 aaKnown RBP27.06■■□□□ 1.92
SEMA3D-202ENST00000444867 ABCC1P33527 1531 aa27.05■■□□□ 1.92
SEMA3D-202ENST00000444867 EFCAB2Q5VUJ9 269 aa27.05■■□□□ 1.92
SEMA3D-202ENST00000444867 ABCA9Q8IUA7 1624 aa27.04■■□□□ 1.92
SEMA3D-202ENST00000444867 RPRD2Q5VT52 1461 aaKnown RBP27.03■■□□□ 1.92
SEMA3D-202ENST00000444867 ARHGEF12Q9NZN5 1544 aa26.98■■□□□ 1.91
SEMA3D-202ENST00000444867 ASXL2Q76L83 1435 aa26.96■■□□□ 1.91
SEMA3D-202ENST00000444867 UNC13BO14795 1591 aa26.94■■□□□ 1.9
SEMA3D-202ENST00000444867 FOXD1Q16676 465 aa26.94■■□□□ 1.9
SEMA3D-202ENST00000444867 DUOX2Q9NRD8 1548 aa26.93■■□□□ 1.9
SEMA3D-202ENST00000444867 NUP155O75694 1391 aa26.93■■□□□ 1.9
SEMA3D-202ENST00000444867 TEX14Q8IWB6 1497 aa26.9■■□□□ 1.9
SEMA3D-202ENST00000444867 NPM1P06748 294 aaKnown RBP eCLIP26.9■■□□□ 1.9
SEMA3D-202ENST00000444867 MIER1Q8N108 512 aa26.88■■□□□ 1.89
SEMA3D-202ENST00000444867 RTEL1-TNFRSF6BF6WH68 1400 aa26.87■■□□□ 1.89
SEMA3D-202ENST00000444867 ERBINQ96RT1 1412 aa26.87■■□□□ 1.89
SEMA3D-202ENST00000444867 PKD2Q13563 968 aa26.87■■□□□ 1.89
SEMA3D-202ENST00000444867 FANCAO15360 1455 aa26.86■■□□□ 1.89
SEMA3D-202ENST00000444867 TRAPPC8Q9Y2L5 1435 aa26.85■■□□□ 1.89
SEMA3D-202ENST00000444867 L3MBTL2Q969R5 705 aa26.85■■□□□ 1.89
SEMA3D-202ENST00000444867 FAM135AQ9P2D6 1515 aa26.84■■□□□ 1.89
SEMA3D-202ENST00000444867 IQGAP3Q86VI3 1631 aa26.83■■□□□ 1.89
SEMA3D-202ENST00000444867 ZFYVE16Q7Z3T8 1539 aa26.81■■□□□ 1.88
SEMA3D-202ENST00000444867 MAGI2Q86UL8 1455 aa26.81■■□□□ 1.88
SEMA3D-202ENST00000444867 CFAP74Q9C0B2 1584 aa26.8■■□□□ 1.88
SEMA3D-202ENST00000444867 INO80Q9ULG1 1556 aaPredicted RBP26.78■■□□□ 1.88
SEMA3D-202ENST00000444867 SPAG9O60271 1321 aaKnown RBP26.77■■□□□ 1.88
SEMA3D-202ENST00000444867 ADGRL1O94910 1474 aa26.76■■□□□ 1.87
SEMA3D-202ENST00000444867 ATP7AQ04656 1500 aa26.73■■□□□ 1.87
SEMA3D-202ENST00000444867 SCAPERQ9BY12 1400 aa26.71■■□□□ 1.87
SEMA3D-202ENST00000444867 DEPDC5O75140 1603 aa26.68■■□□□ 1.86
SEMA3D-202ENST00000444867 AFAP1Q8N556 730 aa26.68■■□□□ 1.86
SEMA3D-202ENST00000444867 CENPBP07199 599 aaPredicted RBP26.67■■□□□ 1.86
SEMA3D-202ENST00000444867 EIF2AK4Q9P2K8 1649 aaKnown RBP26.67■■□□□ 1.86
SEMA3D-202ENST00000444867 CD109Q6YHK3 1445 aa26.66■■□□□ 1.86
SEMA3D-202ENST00000444867 EIF4G2P78344 907 aaKnown RBP eCLIP26.65■■□□□ 1.86
SEMA3D-202ENST00000444867 NBPF8Q3BBV2 869 aa26.64■■□□□ 1.85
SEMA3D-202ENST00000444867 UHRF1BP1Q6BDS2 1440 aa26.63■■□□□ 1.85
SEMA3D-202ENST00000444867 ATP10AO60312 1499 aa26.63■■□□□ 1.85
SEMA3D-202ENST00000444867 ZNF518AQ6AHZ1 1483 aa26.63■■□□□ 1.85
SEMA3D-202ENST00000444867 DDX10Q13206 875 aaKnown RBP26.61■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms