RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 SAMD9Q5K651 1589 aa12.78□□□□□ -0.36
CD44-211ENST00000442151 RANGAP1P46060 587 aaPredicted RBP12.77□□□□□ -0.37
CD44-211ENST00000442151 EVX2Q03828 476 aa12.77□□□□□ -0.37
CD44-211ENST00000442151 KIF21BO75037 1637 aa12.76□□□□□ -0.37
CD44-211ENST00000442151 EFCAB5A4FU69 1503 aa12.75□□□□□ -0.37
CD44-211ENST00000442151 RAPGEF6Q8TEU7 1601 aa12.75□□□□□ -0.37
CD44-211ENST00000442151 PITPNM1O00562 1244 aa12.75□□□□□ -0.37
CD44-211ENST00000442151 ARID3CA6NKF2 412 aa12.74□□□□□ -0.37
CD44-211ENST00000442151 CDK11AQ9UQ88 783 aaPredicted RBP12.74□□□□□ -0.37
CD44-211ENST00000442151 ZBTB12Q9Y330 459 aaPredicted RBP12.74□□□□□ -0.37
CD44-211ENST00000442151 COL17A1Q9UMD9 1497 aaPredicted RBP12.72□□□□□ -0.37
CD44-211ENST00000442151 ARAP3Q8WWN8 1544 aa12.72□□□□□ -0.37
CD44-211ENST00000442151 FHOD3Q2V2M9 1422 aa12.7□□□□□ -0.38
CD44-211ENST00000442151 NEO1Q92859 1461 aa12.7□□□□□ -0.38
CD44-211ENST00000442151 FMN1Q68DA7 1419 aa12.7□□□□□ -0.38
CD44-211ENST00000442151 ABCA9Q8IUA7 1624 aa12.69□□□□□ -0.38
CD44-211ENST00000442151 ADGRL1O94910 1474 aa12.68□□□□□ -0.38
CD44-211ENST00000442151 ATP1B4Q9UN42 357 aaPredicted RBP12.68□□□□□ -0.38
CD44-211ENST00000442151 NUP153P49790 1475 aaKnown RBP12.68□□□□□ -0.38
CD44-211ENST00000442151 CFAP74Q9C0B2 1584 aa12.62□□□□□ -0.39
CD44-211ENST00000442151 EHMT2Q96KQ7 1210 aa12.62□□□□□ -0.39
CD44-211ENST00000442151 RAPGEF3O95398 923 aa12.61□□□□□ -0.39
CD44-211ENST00000442151 EFCAB2Q5VUJ9 269 aa12.61□□□□□ -0.39
CD44-211ENST00000442151 DENND4BO75064 1496 aaPredicted RBP12.61□□□□□ -0.39
CD44-211ENST00000442151 AKNAQ7Z591 1439 aa12.6□□□□□ -0.39
CD44-211ENST00000442151 ARID4BQ4LE39 1312 aaPredicted RBP12.6□□□□□ -0.39
CD44-211ENST00000442151 CLIP1P30622 1438 aa12.6□□□□□ -0.39
CD44-211ENST00000442151 HECW1Q76N89 1606 aa12.59□□□□□ -0.39
CD44-211ENST00000442151 FANCAO15360 1455 aa12.59□□□□□ -0.39
CD44-211ENST00000442151 POGZQ7Z3K3 1410 aa12.57□□□□□ -0.4
CD44-211ENST00000442151 ARHGAP35Q9NRY4 1499 aa12.57□□□□□ -0.4
CD44-211ENST00000442151 PLCH2O75038 1416 aa12.56□□□□□ -0.4
CD44-211ENST00000442151 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.56□□□□□ -0.4
CD44-211ENST00000442151 MAGI2Q86UL8 1455 aa12.56□□□□□ -0.4
CD44-211ENST00000442151 MYCNP04198 464 aaPredicted RBP12.55□□□□□ -0.4
CD44-211ENST00000442151 GABBR2O75899 941 aa12.53□□□□□ -0.4
CD44-211ENST00000442151 TROQ12816 1431 aaPredicted RBP12.53□□□□□ -0.4
CD44-211ENST00000442151 CCDC18Q5T9S5 1454 aa12.52□□□□□ -0.4
CD44-211ENST00000442151 CDK13Q14004 1512 aaKnown RBP12.52□□□□□ -0.4
CD44-211ENST00000442151 SCAPERQ9BY12 1400 aa12.52□□□□□ -0.41
CD44-211ENST00000442151 CASKIN1Q8WXD9 1431 aa12.51□□□□□ -0.41
CD44-211ENST00000442151 C19orf67A6NJJ6 358 aa12.51□□□□□ -0.41
CD44-211ENST00000442151 MYT1LQ9UL68 1186 aa12.51□□□□□ -0.41
CD44-211ENST00000442151 KIF14Q15058 1648 aa12.5□□□□□ -0.41
CD44-211ENST00000442151 TTC37Q6PGP7 1564 aa12.48□□□□□ -0.41
CD44-211ENST00000442151 ZMYM4Q5VZL5 1548 aa12.48□□□□□ -0.41
CD44-211ENST00000442151 ZFYVE16Q7Z3T8 1539 aa12.48□□□□□ -0.41
CD44-211ENST00000442151 PTPRMP28827 1452 aa12.47□□□□□ -0.41
CD44-211ENST00000442151 RICTORQ6R327 1708 aa12.47□□□□□ -0.41
CD44-211ENST00000442151 ARHGEF40Q8TER5 1519 aa12.47□□□□□ -0.41
CD44-211ENST00000442151 MYO5CQ9NQX4 1742 aa12.47□□□□□ -0.41
CD44-211ENST00000442151 ADAMTSL3P82987 1691 aa12.47□□□□□ -0.41
CD44-211ENST00000442151 FRMPD1Q5SYB0 1578 aa12.46□□□□□ -0.41
CD44-211ENST00000442151 HECW2Q9P2P5 1572 aa12.46□□□□□ -0.41
CD44-211ENST00000442151 ATP10AO60312 1499 aa12.46□□□□□ -0.42
CD44-211ENST00000442151 BCORL1Q5H9F3 1711 aa12.46□□□□□ -0.42
CD44-211ENST00000442151 ARHGAP5Q13017 1502 aa12.45□□□□□ -0.42
CD44-211ENST00000442151 ZNF518AQ6AHZ1 1483 aa12.45□□□□□ -0.42
CD44-211ENST00000442151 FYCO1Q9BQS8 1478 aa12.45□□□□□ -0.42
CD44-211ENST00000442151 ESF1Q9H501 851 aaKnown RBP12.44□□□□□ -0.42
CD44-211ENST00000442151 C9orf84Q5VXU9 1444 aa12.43□□□□□ -0.42
CD44-211ENST00000442151 PRKAR2AP13861 404 aaKnown RBP12.42□□□□□ -0.42
CD44-211ENST00000442151 MLECQ14165 292 aa12.41□□□□□ -0.42
CD44-211ENST00000442151 AFAP1Q8N556 730 aa12.41□□□□□ -0.42
CD44-211ENST00000442151 YEATS2Q9ULM3 1422 aa12.4□□□□□ -0.43
CD44-211ENST00000442151 MADDQ8WXG6 1647 aa12.38□□□□□ -0.43
CD44-211ENST00000442151 PCF11O94913 1555 aaKnown RBP12.38□□□□□ -0.43
CD44-211ENST00000442151 PLEKHH2Q8IVE3 1493 aa12.38□□□□□ -0.43
CD44-211ENST00000442151 MLH3Q9UHC1 1453 aa12.38□□□□□ -0.43
CD44-211ENST00000442151 MTUS2Q5JR59 1369 aa12.38□□□□□ -0.43
CD44-211ENST00000442151 CFDP1Q9UEE9 299 aaPredicted RBP12.38□□□□□ -0.43
CD44-211ENST00000442151 ZNF777Q9ULD5 760 aaPredicted RBP12.37□□□□□ -0.43
CD44-211ENST00000442151 CCNB3Q8WWL7 1395 aa12.37□□□□□ -0.43
CD44-211ENST00000442151 RIMS1Q86UR5 1692 aaKnown RBP12.36□□□□□ -0.43
CD44-211ENST00000442151 PREX2Q70Z35 1606 aa12.35□□□□□ -0.43
CD44-211ENST00000442151 KDM5CP41229 1560 aa12.35□□□□□ -0.43
CD44-211ENST00000442151 RSPH4AQ5TD94 716 aa12.34□□□□□ -0.43
CD44-211ENST00000442151 ILDR1Q86SU0 546 aaPredicted RBP12.34□□□□□ -0.43
CD44-211ENST00000442151 SPAG9O60271 1321 aaKnown RBP12.34□□□□□ -0.43
CD44-211ENST00000442151 KIAA1107Q9UPP5 1409 aa12.34□□□□□ -0.43
CD44-211ENST00000442151 CDC42BPBQ9Y5S2 1711 aa12.34□□□□□ -0.43
CD44-211ENST00000442151 REREQ9P2R6 1566 aa12.33□□□□□ -0.43
CD44-211ENST00000442151 LRRIQ1Q96JM4 1722 aa12.33□□□□□ -0.44
CD44-211ENST00000442151 ABCC1P33527 1531 aa12.32□□□□□ -0.44
CD44-211ENST00000442151 ARHGEF12Q9NZN5 1544 aa12.32□□□□□ -0.44
CD44-211ENST00000442151 GPATCH8Q9UKJ3 1502 aaKnown RBP12.32□□□□□ -0.44
CD44-211ENST00000442151 FER1L4A9Z1Z3 1794 aa12.32□□□□□ -0.44
CD44-211ENST00000442151 CNTLNQ9NXG0 1405 aa12.31□□□□□ -0.44
CD44-211ENST00000442151 TRAPPC8Q9Y2L5 1435 aa12.31□□□□□ -0.44
CD44-211ENST00000442151 AGLP35573 1532 aa12.31□□□□□ -0.44
CD44-211ENST00000442151 HNRNPMP52272 730 aaKnown RBP eCLIP12.31□□□□□ -0.44
CD44-211ENST00000442151 CEP162Q5TB80 1403 aa12.3□□□□□ -0.44
CD44-211ENST00000442151 FBXO41Q8TF61 875 aa12.3□□□□□ -0.44
CD44-211ENST00000442151 LMTK3Q96Q04 1460 aa12.3□□□□□ -0.44
CD44-211ENST00000442151 CDC42BPAQ5VT25 1732 aa12.29□□□□□ -0.44
CD44-211ENST00000442151 ITSN2Q9NZM3 1697 aa12.29□□□□□ -0.44
CD44-211ENST00000442151 SETD1BQ9UPS6 1966 aaKnown RBP12.29□□□□□ -0.44
CD44-211ENST00000442151 DIP2CQ9Y2E4 1556 aa12.28□□□□□ -0.44
CD44-211ENST00000442151 EHBP1L1Q8N3D4 1523 aa12.27□□□□□ -0.44
CD44-211ENST00000442151 UHRF1BP1Q6BDS2 1440 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms