RNA–Protein interactions for RNA: ENST00000438462.1

RTN4-211, Transcript of reticulon 4, humanhuman

TSL 5

Gene RTN4, Length 656 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-211ENST00000438462 C3P01024 1663 aa20.42■□□□□ 0.86
RTN4-211ENST00000438462 ARID3CA6NKF2 412 aa20.41■□□□□ 0.86
RTN4-211ENST00000438462 CAMSAP1Q5T5Y3 1602 aa20.4■□□□□ 0.86
RTN4-211ENST00000438462 HECW1Q76N89 1606 aa20.4■□□□□ 0.86
RTN4-211ENST00000438462 SETD1AO15047 1707 aaKnown RBP20.39■□□□□ 0.86
RTN4-211ENST00000438462 CFAP74Q9C0B2 1584 aa20.39■□□□□ 0.85
RTN4-211ENST00000438462 MAGI2Q86UL8 1455 aa20.39■□□□□ 0.85
RTN4-211ENST00000438462 RGS17Q9UGC6 210 aaPredicted RBP20.39■□□□□ 0.85
RTN4-211ENST00000438462 ATP10BO94823 1461 aa20.37■□□□□ 0.85
RTN4-211ENST00000438462 C9orf84Q5VXU9 1444 aa20.34■□□□□ 0.85
RTN4-211ENST00000438462 TOM1O60784 492 aa20.31■□□□□ 0.84
RTN4-211ENST00000438462 ATP10AO60312 1499 aa20.29■□□□□ 0.84
RTN4-211ENST00000438462 GOLGA3Q08378 1498 aa20.29■□□□□ 0.84
RTN4-211ENST00000438462 NCKAP5LQ9HCH0 1330 aa20.28■□□□□ 0.84
RTN4-211ENST00000438462 TRAPPC8Q9Y2L5 1435 aa20.27■□□□□ 0.83
RTN4-211ENST00000438462 CTTNBP2Q8WZ74 1663 aa20.26■□□□□ 0.83
RTN4-211ENST00000438462 ALKQ9UM73 1620 aa20.25■□□□□ 0.83
RTN4-211ENST00000438462 SENP3Q9H4L4 574 aaPredicted RBP20.23■□□□□ 0.83
RTN4-211ENST00000438462 POTEAQ6S8J7 498 aa20.21■□□□□ 0.83
RTN4-211ENST00000438462 RAPGEF2Q9Y4G8 1499 aa20.21■□□□□ 0.83
RTN4-211ENST00000438462 SUPT6HQ7KZ85 1726 aaKnown RBP20.2■□□□□ 0.82
RTN4-211ENST00000438462 CPS1P31327 1500 aa20.19■□□□□ 0.82
RTN4-211ENST00000438462 SRCAPQ6ZRS2 3230 aa20.17■□□□□ 0.82
RTN4-211ENST00000438462 PLA2R1Q13018 1463 aa20.17■□□□□ 0.82
RTN4-211ENST00000438462 TCOF1Q13428 1488 aaKnown RBP20.16■□□□□ 0.82
RTN4-211ENST00000438462 PTPRKQ15262 1439 aa20.15■□□□□ 0.82
RTN4-211ENST00000438462 ZNF142P52746 1687 aaPredicted RBP20.15■□□□□ 0.82
RTN4-211ENST00000438462 PKD2Q13563 968 aa20.13■□□□□ 0.81
RTN4-211ENST00000438462 PPP6R1Q9UPN7 881 aa20.13■□□□□ 0.81
RTN4-211ENST00000438462 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.12■□□□□ 0.813e-14■□□□□ 8.3
RTN4-211ENST00000438462 SCAPERQ9BY12 1400 aa20.11■□□□□ 0.81
RTN4-211ENST00000438462 MYO3AQ8NEV4 1616 aa20.11■□□□□ 0.81
RTN4-211ENST00000438462 RAPGEF6Q8TEU7 1601 aa20.1■□□□□ 0.81
RTN4-211ENST00000438462 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.09■□□□□ 0.81
RTN4-211ENST00000438462 HNRNPUL2Q1KMD3 747 aaKnown RBP20.09■□□□□ 0.81
RTN4-211ENST00000438462 DIP2CQ9Y2E4 1556 aa20.07■□□□□ 0.8
RTN4-211ENST00000438462 NPATQ14207 1427 aa20.06■□□□□ 0.8
RTN4-211ENST00000438462 UPF1Q92900 1129 aaKnown RBP eCLIP20.06■□□□□ 0.8
RTN4-211ENST00000438462 ESF1Q9H501 851 aaKnown RBP20.06■□□□□ 0.8
RTN4-211ENST00000438462 REREQ9P2R6 1566 aa20.06■□□□□ 0.8
RTN4-211ENST00000438462 CEP170BQ9Y4F5 1589 aaPredicted RBP20.06■□□□□ 0.8
RTN4-211ENST00000438462 SHANK2Q9UPX8 1470 aa20.05■□□□□ 0.8
RTN4-211ENST00000438462 AGLP35573 1532 aa20.04■□□□□ 0.8
RTN4-211ENST00000438462 MROH2AA6NES4 1674 aa20.02■□□□□ 0.8
RTN4-211ENST00000438462 CNTLNQ9NXG0 1405 aa20.02■□□□□ 0.79
RTN4-211ENST00000438462 POLR1AO95602 1720 aaPredicted RBP20■□□□□ 0.79
RTN4-211ENST00000438462 ABCA6Q8N139 1617 aa20■□□□□ 0.79
RTN4-211ENST00000438462 RNF17Q9BXT8 1623 aaKnown RBP19.99■□□□□ 0.79
RTN4-211ENST00000438462 FAM9AQ8IZU1 332 aaPredicted RBP19.99■□□□□ 0.79
RTN4-211ENST00000438462 NUP153P49790 1475 aaKnown RBP19.99■□□□□ 0.79
RTN4-211ENST00000438462 KDM5CP41229 1560 aa19.98■□□□□ 0.79
RTN4-211ENST00000438462 NEURL4Q96JN8 1562 aa19.97■□□□□ 0.79
RTN4-211ENST00000438462 VWDEQ8N2E2 1590 aa19.96■□□□□ 0.79
RTN4-211ENST00000438462 ZNF518AQ6AHZ1 1483 aa19.95■□□□□ 0.78
RTN4-211ENST00000438462 P3H3Q8IVL6 736 aa19.95■□□□□ 0.78
RTN4-211ENST00000438462 PLEKHD1A6NEE1 506 aa19.89■□□□□ 0.77
RTN4-211ENST00000438462 PLCH2O75038 1416 aa19.89■□□□□ 0.77
RTN4-211ENST00000438462 MYT1LQ9UL68 1186 aa19.88■□□□□ 0.77
RTN4-211ENST00000438462 DNMT1P26358 1616 aaKnown RBP19.87■□□□□ 0.77
RTN4-211ENST00000438462 ZMYM3Q14202 1370 aa19.86■□□□□ 0.77
RTN4-211ENST00000438462 MYO5CQ9NQX4 1742 aa19.86■□□□□ 0.77
RTN4-211ENST00000438462 SYNMO15061 1565 aa19.86■□□□□ 0.77
RTN4-211ENST00000438462 LRRC7Q96NW7 1537 aa19.86■□□□□ 0.77
RTN4-211ENST00000438462 STRCP1A6NGW2 1772 aa19.85■□□□□ 0.77
RTN4-211ENST00000438462 CLTCQ00610 1675 aaKnown RBP19.84■□□□□ 0.77
RTN4-211ENST00000438462 SAMD9Q5K651 1589 aa19.84■□□□□ 0.77
RTN4-211ENST00000438462 AFAP1Q8N556 730 aa19.82■□□□□ 0.76
RTN4-211ENST00000438462 A2ML1A8K2U0 1454 aa19.8■□□□□ 0.76
RTN4-211ENST00000438462 SUPT5HO00267 1087 aaKnown RBP19.8■□□□□ 0.76
RTN4-211ENST00000438462 TRIM52Q96A61 297 aa19.79■□□□□ 0.76
RTN4-211ENST00000438462 MLH3Q9UHC1 1453 aa19.79■□□□□ 0.76
RTN4-211ENST00000438462 EFCAB2Q5VUJ9 269 aa19.75■□□□□ 0.75
RTN4-211ENST00000438462 KIDINS220Q9ULH0 1771 aa19.72■□□□□ 0.75
RTN4-211ENST00000438462 ARHGAP5Q13017 1502 aa19.71■□□□□ 0.75
RTN4-211ENST00000438462 IQGAP1P46940 1657 aa19.7■□□□□ 0.74
RTN4-211ENST00000438462 SETBP1Q9Y6X0 1596 aa19.7■□□□□ 0.74
RTN4-211ENST00000438462 ITSN2Q9NZM3 1697 aa19.69■□□□□ 0.74
RTN4-211ENST00000438462 NPHP4O75161 1426 aaPredicted RBP19.68■□□□□ 0.74
RTN4-211ENST00000438462 CDK13Q14004 1512 aaKnown RBP19.67■□□□□ 0.74
RTN4-211ENST00000438462 DEPDC5O75140 1603 aa19.67■□□□□ 0.74
RTN4-211ENST00000438462 XIRP1Q702N8 1843 aaKnown RBP19.67■□□□□ 0.74
RTN4-211ENST00000438462 ROBO1Q9Y6N7 1651 aa19.66■□□□□ 0.74
RTN4-211ENST00000438462 FAM135BQ49AJ0 1406 aa19.66■□□□□ 0.74
RTN4-211ENST00000438462 MED14O60244 1454 aa19.65■□□□□ 0.74
RTN4-211ENST00000438462 KIF14Q15058 1648 aa19.63■□□□□ 0.73
RTN4-211ENST00000438462 ABCC1P33527 1531 aa19.62■□□□□ 0.73
RTN4-211ENST00000438462 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.61■□□□□ 0.73
RTN4-211ENST00000438462 ANKLE2Q86XL3 938 aa19.6■□□□□ 0.73
RTN4-211ENST00000438462 PRXQ9BXM0 1461 aa19.6■□□□□ 0.73
RTN4-211ENST00000438462 CDK12Q9NYV4 1490 aaPredicted RBP19.6■□□□□ 0.73
RTN4-211ENST00000438462 LRP6O75581 1613 aa19.58■□□□□ 0.73
RTN4-211ENST00000438462 ZNF772Q68DY9 489 aaPredicted RBP19.58■□□□□ 0.72
RTN4-211ENST00000438462 PHLPP1O60346 1717 aa19.56■□□□□ 0.72
RTN4-211ENST00000438462 ZRANB1Q9UGI0 708 aa19.56■□□□□ 0.72
RTN4-211ENST00000438462 CDC42BPBQ9Y5S2 1711 aa19.56■□□□□ 0.72
RTN4-211ENST00000438462 IFFO2Q5TF58 517 aa19.55■□□□□ 0.72
RTN4-211ENST00000438462 RBM33Q96EV2 1170 aaKnown RBP19.54■□□□□ 0.72
RTN4-211ENST00000438462 JCADQ9P266 1359 aa19.54■□□□□ 0.72
RTN4-211ENST00000438462 PLXNC1O60486 1568 aa19.53■□□□□ 0.72
RTN4-211ENST00000438462 ZC3H13Q5T200 1668 aaKnown RBP19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms