RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 GTF2E1P29083 439 aaPredicted RBP14.16□□□□□ -0.14
SCN4A-201ENST00000435607 IPO8O15397 1037 aaKnown RBP14.15□□□□□ -0.14
SCN4A-201ENST00000435607 RASSF8Q8NHQ8 419 aa14.15□□□□□ -0.14
SCN4A-201ENST00000435607 MSNP26038 577 aaKnown RBP14.15□□□□□ -0.14
SCN4A-201ENST00000435607 CNKSR2Q8WXI2 1034 aa14.15□□□□□ -0.14
SCN4A-201ENST00000435607 MARCH6O60337 910 aa14.14□□□□□ -0.15
SCN4A-201ENST00000435607 FRAT2O75474 233 aaPredicted RBP14.14□□□□□ -0.15
SCN4A-201ENST00000435607 VPS53Q5VIR6 699 aa14.14□□□□□ -0.15
SCN4A-201ENST00000435607 RGS3P49796 1198 aa14.14□□□□□ -0.15
SCN4A-201ENST00000435607 PTMSP20962 102 aa14.14□□□□□ -0.15
SCN4A-201ENST00000435607 SPAG9O60271 1321 aaKnown RBP14.13□□□□□ -0.15
SCN4A-201ENST00000435607 AEBP2Q6ZN18 517 aaPredicted RBP14.13□□□□□ -0.15
SCN4A-201ENST00000435607 CHMP3Q9Y3E7 222 aa14.13□□□□□ -0.15
SCN4A-201ENST00000435607 MORC1Q86VD1 984 aa14.13□□□□□ -0.15
SCN4A-201ENST00000435607 CLIP1P30622 1438 aa14.12□□□□□ -0.15
SCN4A-201ENST00000435607 TCEAL9Q9UHQ7 104 aa14.12□□□□□ -0.15
SCN4A-201ENST00000435607 CTDP1Q9Y5B0 961 aaPredicted RBP14.11□□□□□ -0.15
SCN4A-201ENST00000435607 HIRIP3Q9BW71 556 aaPredicted RBP14.11□□□□□ -0.15
SCN4A-201ENST00000435607 EID1Q9Y6B2 187 aa14.11□□□□□ -0.15
SCN4A-201ENST00000435607 ZCCHC6Q5VYS8 1495 aaKnown RBP14.11□□□□□ -0.15
SCN4A-201ENST00000435607 GOLGA6L1Q8N7Z2 621 aa14.1□□□□□ -0.15
SCN4A-201ENST00000435607 CC2D1BQ5T0F9 858 aaKnown RBP14.09□□□□□ -0.15
SCN4A-201ENST00000435607 STK31Q9BXU1 1019 aa14.08□□□□□ -0.16
SCN4A-201ENST00000435607 TRIM34Q9BYJ4 488 aa14.08□□□□□ -0.16
SCN4A-201ENST00000435607 SYAP1Q96A49 352 aaPredicted RBP14.08□□□□□ -0.16
SCN4A-201ENST00000435607 CWC22Q9HCG8 908 aaKnown RBP14.07□□□□□ -0.16
SCN4A-201ENST00000435607 PDE4CQ08493 712 aa14.07□□□□□ -0.16
SCN4A-201ENST00000435607 CSPP1Q1MSJ5 1256 aa14.07□□□□□ -0.16
SCN4A-201ENST00000435607 KIF3AQ9Y496 699 aa14.05□□□□□ -0.16
SCN4A-201ENST00000435607 HSP90B1P14625 803 aaKnown RBP14.05□□□□□ -0.16
SCN4A-201ENST00000435607 CCNB3Q8WWL7 1395 aa14.05□□□□□ -0.16
SCN4A-201ENST00000435607 AMOTL1Q8IY63 956 aa14.05□□□□□ -0.16
SCN4A-201ENST00000435607 NOL10Q9BSC4 688 aaKnown RBP14.05□□□□□ -0.16
SCN4A-201ENST00000435607 MSH5O43196 834 aa14.04□□□□□ -0.16
SCN4A-201ENST00000435607 TPM3P06753 285 aa14.04□□□□□ -0.16
SCN4A-201ENST00000435607 STK26Q9P289 416 aa14.04□□□□□ -0.16
SCN4A-201ENST00000435607 SAFB2Q14151 953 aaKnown RBP eCLIP14.03□□□□□ -0.16
SCN4A-201ENST00000435607 CHMP4CQ96CF2 233 aa14.03□□□□□ -0.16
SCN4A-201ENST00000435607 GGT6Q6P531 493 aa14.02□□□□□ -0.16
SCN4A-201ENST00000435607 MEX3CQ5U5Q3 659 aaKnown RBP14.02□□□□□ -0.16
SCN4A-201ENST00000435607 HMMRO75330 724 aa14.01□□□□□ -0.17
SCN4A-201ENST00000435607 GBP4Q96PP9 640 aa14.01□□□□□ -0.17
SCN4A-201ENST00000435607 ANO8Q9HCE9 1232 aaPredicted RBP14.01□□□□□ -0.17
SCN4A-201ENST00000435607 TSR1Q2NL82 804 aaKnown RBP14.01□□□□□ -0.17
SCN4A-201ENST00000435607 RB1CC1Q8TDY2 1594 aa14□□□□□ -0.17
SCN4A-201ENST00000435607 TPM2P07951 284 aa14□□□□□ -0.17
SCN4A-201ENST00000435607 TOMM22Q9NS69 142 aa14□□□□□ -0.17
SCN4A-201ENST00000435607 DCAF11Q8TEB1 546 aa14□□□□□ -0.17
SCN4A-201ENST00000435607 APBB1O00213 710 aa13.99□□□□□ -0.17
SCN4A-201ENST00000435607 EVA1CP58658 441 aa13.99□□□□□ -0.17
SCN4A-201ENST00000435607 KIF27Q86VH2 1401 aa13.99□□□□□ -0.17
SCN4A-201ENST00000435607 CREBRFQ8IUR6 639 aa13.99□□□□□ -0.17
SCN4A-201ENST00000435607 AKAP17AQ02040 695 aaKnown RBP13.98□□□□□ -0.17
SCN4A-201ENST00000435607 LRRFIP1Q32MZ4 808 aaKnown RBP13.98□□□□□ -0.17
SCN4A-201ENST00000435607 NGDNQ8NEJ9 315 aaKnown RBP13.98□□□□□ -0.17
SCN4A-201ENST00000435607 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.98□□□□□ -0.17
SCN4A-201ENST00000435607 EEA1Q15075 1411 aa13.98□□□□□ -0.17
SCN4A-201ENST00000435607 PPP4R2Q9NY27 417 aa13.98□□□□□ -0.17
SCN4A-201ENST00000435607 GOLGA3Q08378 1498 aa13.97□□□□□ -0.17
SCN4A-201ENST00000435607 TPD52L1Q16890 204 aaPredicted RBP13.97□□□□□ -0.17
SCN4A-201ENST00000435607 SUPT16HQ9Y5B9 1047 aaKnown RBP13.96□□□□□ -0.17
SCN4A-201ENST00000435607 LMOD3Q0VAK6 560 aa13.96□□□□□ -0.17
SCN4A-201ENST00000435607 TRIM6-TRIM34B2RNG4 842 aa13.96□□□□□ -0.18
SCN4A-201ENST00000435607 PHF23Q9BUL5 403 aaPredicted RBP13.96□□□□□ -0.18
SCN4A-201ENST00000435607 EIF3AQ14152 1382 aaKnown RBP13.95□□□□□ -0.18
SCN4A-201ENST00000435607 TERF2IPQ9NYB0 399 aa13.95□□□□□ -0.18
SCN4A-201ENST00000435607 AMPHP49418 695 aa13.95□□□□□ -0.18
SCN4A-201ENST00000435607 SF3A1Q15459 793 aaKnown RBP13.94□□□□□ -0.18
SCN4A-201ENST00000435607 FOXD1Q16676 465 aa13.94□□□□□ -0.18
SCN4A-201ENST00000435607 RWDD1Q9H446 243 aaPredicted RBP13.93□□□□□ -0.18
SCN4A-201ENST00000435607 SENP3-EIF4A1A0A087X0R7 540 aa13.93□□□□□ -0.18
SCN4A-201ENST00000435607 U2AF1L5P0DN76 240 aaPredicted RBP13.93□□□□□ -0.18
SCN4A-201ENST00000435607 U2AF1Q01081 240 aaKnown RBP eCLIP13.93□□□□□ -0.18
SCN4A-201ENST00000435607 PES1O00541 588 aaKnown RBP13.93□□□□□ -0.18
SCN4A-201ENST00000435607 SYNE3Q6ZMZ3 975 aa13.92□□□□□ -0.18
SCN4A-201ENST00000435607 EIF4G1Q04637 1599 aaKnown RBP13.92□□□□□ -0.18
SCN4A-201ENST00000435607 TPM1P09493 284 aa13.92□□□□□ -0.18
SCN4A-201ENST00000435607 WASHC2AQ641Q2 1341 aa13.92□□□□□ -0.18
SCN4A-201ENST00000435607 CCDC70Q6NSX1 233 aa13.92□□□□□ -0.18
SCN4A-201ENST00000435607 TNNT3P45378 269 aaPredicted RBP13.92□□□□□ -0.18
SCN4A-201ENST00000435607 WWC1Q8IX03 1113 aa13.92□□□□□ -0.18
SCN4A-201ENST00000435607 CCDC43Q96MW1 224 aaKnown RBP13.92□□□□□ -0.18
SCN4A-201ENST00000435607 ITPRIPQ8IWB1 547 aa13.92□□□□□ -0.18
SCN4A-201ENST00000435607 PHF14O94880 888 aa13.91□□□□□ -0.18
SCN4A-201ENST00000435607 FHAD1B1AJZ9 1412 aa13.91□□□□□ -0.18
SCN4A-201ENST00000435607 KIF16BQ96L93 1317 aa13.91□□□□□ -0.18
SCN4A-201ENST00000435607 CCDC47Q96A33 483 aaKnown RBP13.91□□□□□ -0.18
SCN4A-201ENST00000435607 CARMIL2Q6F5E8 1435 aa13.91□□□□□ -0.18
SCN4A-201ENST00000435607 BAZ1BQ9UIG0 1483 aaKnown RBP13.91□□□□□ -0.18
SCN4A-201ENST00000435607 DCAF1Q9Y4B6 1507 aa13.9□□□□□ -0.18
SCN4A-201ENST00000435607 KTN1Q86UP2 1357 aaKnown RBP13.9□□□□□ -0.18
SCN4A-201ENST00000435607 NOP58Q9Y2X3 529 aaKnown RBP13.9□□□□□ -0.18
SCN4A-201ENST00000435607 R3HCC1Q9Y3T6 440 aaKnown RBP13.9□□□□□ -0.18
SCN4A-201ENST00000435607 MIER1Q8N108 512 aa13.89□□□□□ -0.19
SCN4A-201ENST00000435607 C1orf141Q5JVX7 400 aa13.89□□□□□ -0.19
SCN4A-201ENST00000435607 RAD21O60216 631 aa13.89□□□□□ -0.19
SCN4A-201ENST00000435607 SETQ01105 290 aaPredicted RBP13.89□□□□□ -0.19
SCN4A-201ENST00000435607 CPLX2Q6PUV4 134 aaKnown RBP13.88□□□□□ -0.19
SCN4A-201ENST00000435607 PMFBP1Q8TBY8 1022 aa13.88□□□□□ -0.19
SCN4A-201ENST00000435607 SPRYD3Q8NCJ5 442 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms