RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 SLC24A1O60721 1099 aa9.79□□□□□ -0.84
CPSF6-202ENST00000435070 CDCA7LQ96GN5 454 aa9.79□□□□□ -0.84
CPSF6-202ENST00000435070 CRBNQ96SW2 442 aa9.79□□□□□ -0.84
CPSF6-202ENST00000435070 SLKQ9H2G2 1235 aaPredicted RBP9.79□□□□□ -0.84
CPSF6-202ENST00000435070 PNNQ9H307 717 aaKnown RBP9.78□□□□□ -0.84
CPSF6-202ENST00000435070 TIAM1Q13009 1591 aa9.78□□□□□ -0.84
CPSF6-202ENST00000435070 NCAPD3P42695 1498 aa9.78□□□□□ -0.84
CPSF6-202ENST00000435070 HSP90AA1P07900 732 aaKnown RBP9.78□□□□□ -0.84
CPSF6-202ENST00000435070 PNISRQ8TF01 805 aaKnown RBP9.78□□□□□ -0.84
CPSF6-202ENST00000435070 ERICH3Q5RHP9 1530 aa9.77□□□□□ -0.84
CPSF6-202ENST00000435070 KIF27Q86VH2 1401 aa9.77□□□□□ -0.85
CPSF6-202ENST00000435070 UACAQ9BZF9 1416 aa9.77□□□□□ -0.85
CPSF6-202ENST00000435070 GZF1Q9H116 711 aaPredicted RBP9.77□□□□□ -0.85
CPSF6-202ENST00000435070 PEG3Q9GZU2 1588 aa9.76□□□□□ -0.85
CPSF6-202ENST00000435070 NCOA1Q15788 1441 aa9.75□□□□□ -0.85
CPSF6-202ENST00000435070 PTPRKQ15262 1439 aa9.75□□□□□ -0.85
CPSF6-202ENST00000435070 NCOA2Q15596 1464 aa9.75□□□□□ -0.85
CPSF6-202ENST00000435070 A0A0U1RQG5 324 aaPredicted RBP9.74□□□□□ -0.85
CPSF6-202ENST00000435070 C20orf194Q5TEA3 1177 aa9.74□□□□□ -0.85
CPSF6-202ENST00000435070 MPHOSPH9Q99550 1183 aa9.73□□□□□ -0.85
CPSF6-202ENST00000435070 SPRYD3Q8NCJ5 442 aa9.72□□□□□ -0.85
CPSF6-202ENST00000435070 PANK2Q9BZ23 570 aa9.72□□□□□ -0.85
CPSF6-202ENST00000435070 MTUS2Q5JR59 1369 aa9.72□□□□□ -0.85
CPSF6-202ENST00000435070 FHOD3Q2V2M9 1422 aa9.71□□□□□ -0.86
CPSF6-202ENST00000435070 FAM161AQ3B820 660 aa9.71□□□□□ -0.86
CPSF6-202ENST00000435070 KDM5BQ9UGL1 1544 aa9.71□□□□□ -0.86
CPSF6-202ENST00000435070 ARID3CA6NKF2 412 aa9.7□□□□□ -0.86
CPSF6-202ENST00000435070 NAIPQ13075 1403 aa9.7□□□□□ -0.86
CPSF6-202ENST00000435070 FMN1Q68DA7 1419 aa9.7□□□□□ -0.86
CPSF6-202ENST00000435070 FGD6Q6ZV73 1430 aa9.7□□□□□ -0.86
CPSF6-202ENST00000435070 MAP3K1Q13233 1512 aa9.7□□□□□ -0.86
CPSF6-202ENST00000435070 TOP2BQ02880 1626 aa9.69□□□□□ -0.86
CPSF6-202ENST00000435070 L1TD1Q5T7N2 865 aaKnown RBP9.69□□□□□ -0.86
CPSF6-202ENST00000435070 HFM1A2PYH4 1435 aa9.69□□□□□ -0.86
CPSF6-202ENST00000435070 RRP9O43818 475 aaKnown RBP9.69□□□□□ -0.86
CPSF6-202ENST00000435070 C8orf34Q49A92 452 aa9.68□□□□□ -0.86
CPSF6-202ENST00000435070 DHX29Q7Z478 1369 aaKnown RBP9.68□□□□□ -0.86
CPSF6-202ENST00000435070 XRCC6P12956 609 aaKnown RBP eCLIP9.68□□□□□ -0.869e-12■■■■□ 25
CPSF6-202ENST00000435070 ARID3AQ99856 593 aa9.67□□□□□ -0.86
CPSF6-202ENST00000435070 CARMIL1Q5VZK9 1371 aa9.67□□□□□ -0.86
CPSF6-202ENST00000435070 GOLGA6L3A6NEY3 463 aa9.66□□□□□ -0.86
CPSF6-202ENST00000435070 IGF1RP08069 1367 aa9.65□□□□□ -0.86
CPSF6-202ENST00000435070 KDM2AQ9Y2K7 1162 aa9.64□□□□□ -0.87
CPSF6-202ENST00000435070 PTPN23Q9H3S7 1636 aa9.64□□□□□ -0.87
CPSF6-202ENST00000435070 SEC24BO95487 1268 aa9.63□□□□□ -0.87
CPSF6-202ENST00000435070 CLCN1P35523 988 aa9.63□□□□□ -0.87
CPSF6-202ENST00000435070 KTN1Q86UP2 1357 aaKnown RBP9.63□□□□□ -0.87
CPSF6-202ENST00000435070 PLPPR3Q6T4P5 718 aa9.63□□□□□ -0.87
CPSF6-202ENST00000435070 CENPQQ7L2Z9 268 aaPredicted RBP9.63□□□□□ -0.87
CPSF6-202ENST00000435070 PCF11O94913 1555 aaKnown RBP9.63□□□□□ -0.87
CPSF6-202ENST00000435070 USP47Q96K76 1375 aa9.62□□□□□ -0.87
CPSF6-202ENST00000435070 CC2D1BQ5T0F9 858 aaKnown RBP9.62□□□□□ -0.87
CPSF6-202ENST00000435070 MYBBP1AQ9BQG0 1328 aaKnown RBP9.62□□□□□ -0.87
CPSF6-202ENST00000435070 BECN1Q14457 450 aa9.62□□□□□ -0.87
CPSF6-202ENST00000435070 RBM10P98175 930 aaKnown RBP9.61□□□□□ -0.87
CPSF6-202ENST00000435070 PDE3BQ13370 1112 aa9.61□□□□□ -0.87
CPSF6-202ENST00000435070 CARD11Q9BXL7 1154 aa9.61□□□□□ -0.87
CPSF6-202ENST00000435070 MYH16Q9H6N6 1097 aa9.61□□□□□ -0.87
CPSF6-202ENST00000435070 CUX1P39880 1505 aa9.6□□□□□ -0.87
CPSF6-202ENST00000435070 FBLN2P98095 1184 aa9.6□□□□□ -0.87
CPSF6-202ENST00000435070 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.6□□□□□ -0.872e-6■□□□□ 10
CPSF6-202ENST00000435070 ATAD2BQ9ULI0 1458 aa9.6□□□□□ -0.87
CPSF6-202ENST00000435070 TRIM44Q96DX7 344 aaPredicted RBP9.6□□□□□ -0.87
CPSF6-202ENST00000435070 ST20-MTHFSA0A0A6YYL1 179 aa9.6□□□□□ -0.87
CPSF6-202ENST00000435070 KDM2BQ8NHM5 1336 aa9.59□□□□□ -0.87
CPSF6-202ENST00000435070 ESPNB1AK53 854 aa9.59□□□□□ -0.87
CPSF6-202ENST00000435070 SPATA31E1Q6ZUB1 1445 aa9.59□□□□□ -0.87
CPSF6-202ENST00000435070 DENND4BO75064 1496 aaPredicted RBP9.59□□□□□ -0.87
CPSF6-202ENST00000435070 NLRP13Q86W25 1043 aa9.58□□□□□ -0.88
CPSF6-202ENST00000435070 ERBB4Q15303 1308 aa9.58□□□□□ -0.88
CPSF6-202ENST00000435070 KIF15Q9NS87 1388 aa9.58□□□□□ -0.88
CPSF6-202ENST00000435070 LRPPRCP42704 1394 aaKnown RBP9.58□□□□□ -0.88
CPSF6-202ENST00000435070 RALBP1Q15311 655 aa9.57□□□□□ -0.88
CPSF6-202ENST00000435070 BRD4O60885 1362 aaPredicted RBP9.57□□□□□ -0.88
CPSF6-202ENST00000435070 CFTRP13569 1480 aa9.56□□□□□ -0.88
CPSF6-202ENST00000435070 TRAK2O60296 914 aa9.56□□□□□ -0.88
CPSF6-202ENST00000435070 CANXP27824 592 aaKnown RBP9.56□□□□□ -0.88
CPSF6-202ENST00000435070 USP19O94966 1318 aa9.56□□□□□ -0.88
CPSF6-202ENST00000435070 MCM4P33991 863 aa9.56□□□□□ -0.88
CPSF6-202ENST00000435070 FAM13BQ9NYF5 915 aa9.55□□□□□ -0.88
CPSF6-202ENST00000435070 MYOM3Q5VTT5 1437 aa9.55□□□□□ -0.88
CPSF6-202ENST00000435070 KIAA1211Q6ZU35 1233 aa9.55□□□□□ -0.88
CPSF6-202ENST00000435070 ANKRD30BQ9BXX2 1392 aa9.55□□□□□ -0.88
CPSF6-202ENST00000435070 BIVM-ERCC5R4GMW8 1640 aa9.55□□□□□ -0.88
CPSF6-202ENST00000435070 IGHDP01880 384 aa9.54□□□□□ -0.88
CPSF6-202ENST00000435070 TBC1D2Q9BYX2 928 aa9.54□□□□□ -0.88
CPSF6-202ENST00000435070 UPF2Q9HAU5 1272 aaKnown RBP9.54□□□□□ -0.88
CPSF6-202ENST00000435070 GRPEL1Q9HAV7 217 aa9.54□□□□□ -0.88
CPSF6-202ENST00000435070 CASKIN1Q8WXD9 1431 aa9.53□□□□□ -0.88
CPSF6-202ENST00000435070 PDCL3Q9H2J4 239 aa9.53□□□□□ -0.88
CPSF6-202ENST00000435070 MRE11P49959 708 aa9.53□□□□□ -0.88
CPSF6-202ENST00000435070 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.53□□□□□ -0.88
CPSF6-202ENST00000435070 FSD2A1L4K1 749 aa9.53□□□□□ -0.88
CPSF6-202ENST00000435070 KDM6BO15054 1643 aa9.53□□□□□ -0.88
CPSF6-202ENST00000435070 BCAR3O75815 825 aa9.52□□□□□ -0.88
CPSF6-202ENST00000435070 ADAMTS8Q9UP79 889 aa9.52□□□□□ -0.88
CPSF6-202ENST00000435070 ANTXR1Q9H6X2 564 aa9.52□□□□□ -0.89
CPSF6-202ENST00000435070 PRDM10Q9NQV6 1147 aa9.52□□□□□ -0.89
CPSF6-202ENST00000435070 RPRD2Q5VT52 1461 aaKnown RBP9.51□□□□□ -0.89
CPSF6-202ENST00000435070 CFAP43Q8NDM7 1665 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms