RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 NOP58Q9Y2X3 529 aaKnown RBP19.65■□□□□ 0.74
PTPRF-206ENST00000429895 BAZ1BQ9UIG0 1483 aaKnown RBP19.63■□□□□ 0.73
PTPRF-206ENST00000429895 AMER1Q5JTC6 1135 aaPredicted RBP19.62■□□□□ 0.73
PTPRF-206ENST00000429895 CCDC9Q9Y3X0 531 aaKnown RBP19.62■□□□□ 0.73
PTPRF-206ENST00000429895 EEA1Q15075 1411 aa19.58■□□□□ 0.73
PTPRF-206ENST00000429895 HDGFL2Q7Z4V5 671 aaPredicted RBP19.58■□□□□ 0.72
PTPRF-206ENST00000429895 RB1CC1Q8TDY2 1594 aa19.56■□□□□ 0.72
PTPRF-206ENST00000429895 CHAF1AQ13111 956 aaPredicted RBP19.56■□□□□ 0.72
PTPRF-206ENST00000429895 KIAA1211Q6ZU35 1233 aa19.55■□□□□ 0.72
PTPRF-206ENST00000429895 CHMP3Q9Y3E7 222 aa19.54■□□□□ 0.72
PTPRF-206ENST00000429895 FOXD1Q16676 465 aa19.54■□□□□ 0.72
PTPRF-206ENST00000429895 MYO15BQ96JP2 1530 aa19.52■□□□□ 0.72
PTPRF-206ENST00000429895 CEP164Q9UPV0 1460 aa19.52■□□□□ 0.72
PTPRF-206ENST00000429895 TMX4Q9H1E5 349 aaPredicted RBP19.52■□□□□ 0.72
PTPRF-206ENST00000429895 MSNP26038 577 aaKnown RBP19.52■□□□□ 0.71
PTPRF-206ENST00000429895 ITPRIPQ8IWB1 547 aa19.51■□□□□ 0.71
PTPRF-206ENST00000429895 U2AF1L5P0DN76 240 aaPredicted RBP19.51■□□□□ 0.71
PTPRF-206ENST00000429895 U2AF1Q01081 240 aaKnown RBP eCLIP19.51■□□□□ 0.71
PTPRF-206ENST00000429895 GORABQ5T7V8 394 aa19.49■□□□□ 0.71
PTPRF-206ENST00000429895 HSPA5P11021 654 aaKnown RBP19.48■□□□□ 0.71
PTPRF-206ENST00000429895 PDE4CQ08493 712 aa19.47■□□□□ 0.71
PTPRF-206ENST00000429895 TNIKQ9UKE5 1360 aa19.47■□□□□ 0.71
PTPRF-206ENST00000429895 PKD2Q13563 968 aa19.47■□□□□ 0.71
PTPRF-206ENST00000429895 IPO8O15397 1037 aaKnown RBP19.47■□□□□ 0.71
PTPRF-206ENST00000429895 KIAA2012Q0VF49 1180 aa19.46■□□□□ 0.71
PTPRF-206ENST00000429895 TAF7LQ5H9L4 462 aa19.46■□□□□ 0.71
PTPRF-206ENST00000429895 PRM3Q9NNZ6 103 aa19.46■□□□□ 0.71
PTPRF-206ENST00000429895 NUTM2DQ5VT03 806 aaPredicted RBP19.46■□□□□ 0.71
PTPRF-206ENST00000429895 HSP90B1P14625 803 aaKnown RBP19.45■□□□□ 0.7
PTPRF-206ENST00000429895 KTN1Q86UP2 1357 aaKnown RBP19.45■□□□□ 0.7
PTPRF-206ENST00000429895 G3V3G9 751 aa19.44■□□□□ 0.7
PTPRF-206ENST00000429895 DCAF8Q5TAQ9 597 aa19.44■□□□□ 0.7
PTPRF-206ENST00000429895 NOC3LQ8WTT2 800 aaKnown RBP19.42■□□□□ 0.7
PTPRF-206ENST00000429895 L1TD1Q5T7N2 865 aaKnown RBP19.41■□□□□ 0.7
PTPRF-206ENST00000429895 GZF1Q9H116 711 aaPredicted RBP19.41■□□□□ 0.7
PTPRF-206ENST00000429895 ROCK2O75116 1388 aaKnown RBP19.41■□□□□ 0.7
PTPRF-206ENST00000429895 CFAP44Q96MT7 982 aa19.4■□□□□ 0.7
PTPRF-206ENST00000429895 TRIM6-TRIM34B2RNG4 842 aa19.4■□□□□ 0.7
PTPRF-206ENST00000429895 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.4■□□□□ 0.7
PTPRF-206ENST00000429895 ARID3AQ99856 593 aa19.39■□□□□ 0.69
PTPRF-206ENST00000429895 STK31Q9BXU1 1019 aa19.39■□□□□ 0.69
PTPRF-206ENST00000429895 LTV1Q96GA3 475 aaPredicted RBP19.39■□□□□ 0.69
PTPRF-206ENST00000429895 SLC4A10Q6U841 1118 aa19.39■□□□□ 0.69
PTPRF-206ENST00000429895 FHAD1B1AJZ9 1412 aa19.39■□□□□ 0.69
PTPRF-206ENST00000429895 CALD1Q05682 793 aaKnown RBP19.39■□□□□ 0.69
PTPRF-206ENST00000429895 NUTM2FA1L443 756 aa19.38■□□□□ 0.69
PTPRF-206ENST00000429895 NOL8Q76FK4 1167 aaKnown RBP19.38■□□□□ 0.69
PTPRF-206ENST00000429895 CARMIL1Q5VZK9 1371 aa19.38■□□□□ 0.69
PTPRF-206ENST00000429895 SPAG9O60271 1321 aaKnown RBP19.38■□□□□ 0.69
PTPRF-206ENST00000429895 SLKQ9H2G2 1235 aaPredicted RBP19.37■□□□□ 0.69
PTPRF-206ENST00000429895 CUX2O14529 1486 aa19.37■□□□□ 0.69
PTPRF-206ENST00000429895 CREBRFQ8IUR6 639 aa19.37■□□□□ 0.69
PTPRF-206ENST00000429895 RWDD1Q9H446 243 aaPredicted RBP19.36■□□□□ 0.69
PTPRF-206ENST00000429895 ANO8Q9HCE9 1232 aaPredicted RBP19.36■□□□□ 0.69
PTPRF-206ENST00000429895 RASSF8Q8NHQ8 419 aa19.35■□□□□ 0.69
PTPRF-206ENST00000429895 MFAP1P55081 439 aaKnown RBP19.35■□□□□ 0.69
PTPRF-206ENST00000429895 CCDC146Q8IYE0 955 aa19.34■□□□□ 0.69
PTPRF-206ENST00000429895 NGDNQ8NEJ9 315 aaKnown RBP19.34■□□□□ 0.69
PTPRF-206ENST00000429895 GPATCH3Q96I76 525 aa19.34■□□□□ 0.69
PTPRF-206ENST00000429895 TOMM22Q9NS69 142 aa19.34■□□□□ 0.69
PTPRF-206ENST00000429895 SMC4Q9NTJ3 1288 aa19.34■□□□□ 0.69
PTPRF-206ENST00000429895 GBP4Q96PP9 640 aa19.33■□□□□ 0.69
PTPRF-206ENST00000429895 RCAN3Q9UKA8 241 aa19.33■□□□□ 0.69
PTPRF-206ENST00000429895 FRAT2O75474 233 aaPredicted RBP19.33■□□□□ 0.68
PTPRF-206ENST00000429895 FOXD4L1Q9NU39 408 aa19.33■□□□□ 0.68
PTPRF-206ENST00000429895 VPS53Q5VIR6 699 aa19.32■□□□□ 0.68
PTPRF-206ENST00000429895 CCDC180Q9P1Z9 1646 aa19.32■□□□□ 0.68
PTPRF-206ENST00000429895 HTATSF1O43719 755 aaKnown RBP19.31■□□□□ 0.68
PTPRF-206ENST00000429895 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.31■□□□□ 0.68
PTPRF-206ENST00000429895 GTF2E1P29083 439 aaPredicted RBP19.31■□□□□ 0.68
PTPRF-206ENST00000429895 ARHGAP35Q9NRY4 1499 aa19.31■□□□□ 0.68
PTPRF-206ENST00000429895 AMPHP49418 695 aa19.3■□□□□ 0.68
PTPRF-206ENST00000429895 CLUAP1Q96AJ1 413 aa19.3■□□□□ 0.68
PTPRF-206ENST00000429895 SETD5Q9C0A6 1442 aa19.3■□□□□ 0.68
PTPRF-206ENST00000429895 KIF3BO15066 747 aa19.3■□□□□ 0.68
PTPRF-206ENST00000429895 NUP155O75694 1391 aa19.29■□□□□ 0.68
PTPRF-206ENST00000429895 DEKP35659 375 aaKnown RBP19.29■□□□□ 0.68
PTPRF-206ENST00000429895 EID1Q9Y6B2 187 aa19.29■□□□□ 0.68
PTPRF-206ENST00000429895 TPM4P67936 248 aa19.28■□□□□ 0.68
PTPRF-206ENST00000429895 CCER2I3L3R5 266 aa19.26■□□□□ 0.67
PTPRF-206ENST00000429895 A0A0U1RQG5 324 aaPredicted RBP19.25■□□□□ 0.67
PTPRF-206ENST00000429895 TERF2IPQ9NYB0 399 aa19.25■□□□□ 0.67
PTPRF-206ENST00000429895 MARCH6O60337 910 aa19.25■□□□□ 0.67
PTPRF-206ENST00000429895 MPHOSPH9Q99550 1183 aa19.25■□□□□ 0.67
PTPRF-206ENST00000429895 EFCAB2Q5VUJ9 269 aa19.24■□□□□ 0.67
PTPRF-206ENST00000429895 FOXD4L5Q5VV16 416 aaPredicted RBP19.24■□□□□ 0.67
PTPRF-206ENST00000429895 FOXD4L4Q8WXT5 416 aaPredicted RBP19.24■□□□□ 0.67
PTPRF-206ENST00000429895 HMMRO75330 724 aa19.24■□□□□ 0.67
PTPRF-206ENST00000429895 PMFBP1Q8TBY8 1022 aa19.24■□□□□ 0.67
PTPRF-206ENST00000429895 CARMIL2Q6F5E8 1435 aa19.24■□□□□ 0.67
PTPRF-206ENST00000429895 HNRNPMP52272 730 aaKnown RBP eCLIP19.23■□□□□ 0.67
PTPRF-206ENST00000429895 RALBP1Q15311 655 aa19.23■□□□□ 0.67
PTPRF-206ENST00000429895 EIF3AQ14152 1382 aaKnown RBP19.23■□□□□ 0.67
PTPRF-206ENST00000429895 SYAP1Q96A49 352 aaPredicted RBP19.23■□□□□ 0.67
PTPRF-206ENST00000429895 MSH5O43196 834 aa19.22■□□□□ 0.67
PTPRF-206ENST00000429895 RBM19Q9Y4C8 960 aaKnown RBP19.21■□□□□ 0.67
PTPRF-206ENST00000429895 PTMSP20962 102 aa19.21■□□□□ 0.67
PTPRF-206ENST00000429895 WASHC2CQ9Y4E1 1318 aa19.21■□□□□ 0.67
PTPRF-206ENST00000429895 KANK4Q5T7N3 995 aaPredicted RBP19.2■□□□□ 0.66
PTPRF-206ENST00000429895 SOGA1O94964 1423 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms