RNA–Protein interactions for RNA: ENST00000421141.5

PTCH1-206, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,659 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-206ENST00000421141 MAPK8IP3Q9UPT6 1336 aa14.19□□□□□ -0.14
PTCH1-206ENST00000421141 EIF3AQ14152 1382 aaKnown RBP14.19□□□□□ -0.14
PTCH1-206ENST00000421141 UPF2Q9HAU5 1272 aaKnown RBP14.18□□□□□ -0.14
PTCH1-206ENST00000421141 SYNJ1O43426 1573 aa14.18□□□□□ -0.14
PTCH1-206ENST00000421141 SAFB2Q14151 953 aaKnown RBP eCLIP14.17□□□□□ -0.14
PTCH1-206ENST00000421141 SYNJ2O15056 1496 aa14.17□□□□□ -0.14
PTCH1-206ENST00000421141 PAK3O75914 559 aaPredicted RBP14.17□□□□□ -0.14
PTCH1-206ENST00000421141 SNAPC4Q5SXM2 1469 aa14.17□□□□□ -0.14
PTCH1-206ENST00000421141 ARHGAP5Q13017 1502 aa14.17□□□□□ -0.14
PTCH1-206ENST00000421141 KIF21BO75037 1637 aa14.16□□□□□ -0.14
PTCH1-206ENST00000421141 HDGFL2Q7Z4V5 671 aaPredicted RBP14.15□□□□□ -0.14
PTCH1-206ENST00000421141 UACAQ9BZF9 1416 aa14.14□□□□□ -0.15
PTCH1-206ENST00000421141 KANK4Q5T7N3 995 aaPredicted RBP14.14□□□□□ -0.15
PTCH1-206ENST00000421141 PRG4Q92954 1404 aaPredicted RBP14.14□□□□□ -0.15
PTCH1-206ENST00000421141 ROCK2O75116 1388 aaKnown RBP14.14□□□□□ -0.15
PTCH1-206ENST00000421141 IGF1RP08069 1367 aa14.14□□□□□ -0.15
PTCH1-206ENST00000421141 RUSC2Q8N2Y8 1516 aa14.13□□□□□ -0.15
PTCH1-206ENST00000421141 POLA1P09884 1462 aaPredicted RBP14.13□□□□□ -0.15
PTCH1-206ENST00000421141 HECW1Q76N89 1606 aa14.13□□□□□ -0.15
PTCH1-206ENST00000421141 HSP90AA1P07900 732 aaKnown RBP14.13□□□□□ -0.15
PTCH1-206ENST00000421141 TNNT2P45379 298 aaPredicted RBP14.12□□□□□ -0.15
PTCH1-206ENST00000421141 ERICH3Q5RHP9 1530 aa14.12□□□□□ -0.15
PTCH1-206ENST00000421141 SOX12O15370 315 aa14.11□□□□□ -0.15
PTCH1-206ENST00000421141 MPHOSPH9Q99550 1183 aa14.11□□□□□ -0.15
PTCH1-206ENST00000421141 SUPT6HQ7KZ85 1726 aaKnown RBP14.1□□□□□ -0.15
PTCH1-206ENST00000421141 SIN3AQ96ST3 1273 aa14.1□□□□□ -0.15
PTCH1-206ENST00000421141 EFCAB5A4FU69 1503 aa14.09□□□□□ -0.15
PTCH1-206ENST00000421141 LAS1LQ9Y4W2 734 aaKnown RBP14.09□□□□□ -0.15
PTCH1-206ENST00000421141 U2SURPO15042 1029 aaKnown RBP14.08□□□□□ -0.15
PTCH1-206ENST00000421141 KIF21AQ7Z4S6 1674 aa14.08□□□□□ -0.15
PTCH1-206ENST00000421141 KAT6BQ8WYB5 2073 aa14.08□□□□□ -0.16
PTCH1-206ENST00000421141 FOXD1Q16676 465 aa14.07□□□□□ -0.16
PTCH1-206ENST00000421141 TIMELESSQ9UNS1 1208 aa14.07□□□□□ -0.16
PTCH1-206ENST00000421141 CC2D1BQ5T0F9 858 aaKnown RBP14.06□□□□□ -0.16
PTCH1-206ENST00000421141 IQGAP2Q13576 1575 aa14.06□□□□□ -0.16
PTCH1-206ENST00000421141 CSB-PGBD3P0DP91 1061 aa14.06□□□□□ -0.16
PTCH1-206ENST00000421141 ANP32AP39687 249 aaKnown RBP14.06□□□□□ -0.16
PTCH1-206ENST00000421141 CCDC9Q9Y3X0 531 aaKnown RBP14.06□□□□□ -0.16
PTCH1-206ENST00000421141 CCDC144AA2RUR9 1427 aa14.06□□□□□ -0.16
PTCH1-206ENST00000421141 PEG3Q9GZU2 1588 aa14.06□□□□□ -0.16
PTCH1-206ENST00000421141 MORC1Q86VD1 984 aa14.05□□□□□ -0.16
PTCH1-206ENST00000421141 RAB3GAP2Q9H2M9 1393 aa14.05□□□□□ -0.16
PTCH1-206ENST00000421141 FTSJ3Q8IY81 847 aaKnown RBP14.04□□□□□ -0.16
PTCH1-206ENST00000421141 MAGI1Q96QZ7 1491 aaPredicted RBP14.04□□□□□ -0.16
PTCH1-206ENST00000421141 MYOM3Q5VTT5 1437 aa14.03□□□□□ -0.16
PTCH1-206ENST00000421141 NGDNQ8NEJ9 315 aaKnown RBP14.03□□□□□ -0.16
PTCH1-206ENST00000421141 RTF1Q92541 710 aaKnown RBP14.03□□□□□ -0.16
PTCH1-206ENST00000421141 GTF3C3Q9Y5Q9 886 aa14.03□□□□□ -0.16
PTCH1-206ENST00000421141 FYCO1Q9BQS8 1478 aa14.02□□□□□ -0.16
PTCH1-206ENST00000421141 TERF2IPQ9NYB0 399 aa14.02□□□□□ -0.17
PTCH1-206ENST00000421141 DNAJC5BQ9UF47 199 aa14.01□□□□□ -0.17
PTCH1-206ENST00000421141 NUTM2DQ5VT03 806 aaPredicted RBP14.01□□□□□ -0.17
PTCH1-206ENST00000421141 CCDC136Q96JN2 1154 aa14.01□□□□□ -0.17
PTCH1-206ENST00000421141 NEUROD2Q15784 382 aa14□□□□□ -0.17
PTCH1-206ENST00000421141 VGFO15240 615 aaPredicted RBP14□□□□□ -0.17
PTCH1-206ENST00000421141 CTTNBP2Q8WZ74 1663 aa14□□□□□ -0.17
PTCH1-206ENST00000421141 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.98□□□□□ -0.17
PTCH1-206ENST00000421141 CASKIN1Q8WXD9 1431 aa13.98□□□□□ -0.17
PTCH1-206ENST00000421141 CHMP4BQ9H444 224 aaKnown RBP13.98□□□□□ -0.17
PTCH1-206ENST00000421141 FKBP8Q14318 412 aa13.98□□□□□ -0.17
PTCH1-206ENST00000421141 GOLGA2Q08379 1002 aa13.97□□□□□ -0.17
PTCH1-206ENST00000421141 PLEKHH2Q8IVE3 1493 aa13.97□□□□□ -0.17
PTCH1-206ENST00000421141 MEX3CQ5U5Q3 659 aaKnown RBP13.96□□□□□ -0.17
PTCH1-206ENST00000421141 EHBP1L1Q8N3D4 1523 aa13.96□□□□□ -0.17
PTCH1-206ENST00000421141 ABCA10Q8WWZ4 1543 aa13.96□□□□□ -0.18
PTCH1-206ENST00000421141 BIVM-ERCC5R4GMW8 1640 aa13.96□□□□□ -0.18
PTCH1-206ENST00000421141 KIF14Q15058 1648 aa13.95□□□□□ -0.18
PTCH1-206ENST00000421141 POGZQ7Z3K3 1410 aa13.95□□□□□ -0.18
PTCH1-206ENST00000421141 KTN1Q86UP2 1357 aaKnown RBP13.94□□□□□ -0.18
PTCH1-206ENST00000421141 CASC1Q6TDU7 716 aa13.94□□□□□ -0.18
PTCH1-206ENST00000421141 KIF15Q9NS87 1388 aa13.93□□□□□ -0.18
PTCH1-206ENST00000421141 TMX4Q9H1E5 349 aaPredicted RBP13.93□□□□□ -0.18
PTCH1-206ENST00000421141 MS4A1P11836 297 aa13.93□□□□□ -0.18
PTCH1-206ENST00000421141 CALD1Q05682 793 aaKnown RBP13.92□□□□□ -0.18
PTCH1-206ENST00000421141 EIF5BO60841 1220 aaKnown RBP13.92□□□□□ -0.18
PTCH1-206ENST00000421141 EVA1CP58658 441 aa13.92□□□□□ -0.18
PTCH1-206ENST00000421141 PBRM1Q86U86 1689 aa13.91□□□□□ -0.18
PTCH1-206ENST00000421141 LRRC9Q6ZRR7 1453 aa13.91□□□□□ -0.18
PTCH1-206ENST00000421141 ATF3P18847 181 aa13.91□□□□□ -0.18
PTCH1-206ENST00000421141 AMPHP49418 695 aa13.9□□□□□ -0.18
PTCH1-206ENST00000421141 OS9Q13438 667 aaPredicted RBP13.9□□□□□ -0.18
PTCH1-206ENST00000421141 CHMP4AQ9BY43 222 aa13.9□□□□□ -0.18
PTCH1-206ENST00000421141 KIAA0586Q9BVV6 1533 aa13.9□□□□□ -0.18
PTCH1-206ENST00000421141 NUTM2FA1L443 756 aa13.89□□□□□ -0.19
PTCH1-206ENST00000421141 TRAK1Q9UPV9 953 aa13.89□□□□□ -0.19
PTCH1-206ENST00000421141 GRIN2AQ12879 1464 aa13.89□□□□□ -0.19
PTCH1-206ENST00000421141 CFAP65Q6ZU64 1925 aaKnown RBP13.89□□□□□ -0.19
PTCH1-206ENST00000421141 NCOA2Q15596 1464 aa13.88□□□□□ -0.19
PTCH1-206ENST00000421141 EVC2Q86UK5 1308 aa13.88□□□□□ -0.19
PTCH1-206ENST00000421141 FGD6Q6ZV73 1430 aa13.88□□□□□ -0.19
PTCH1-206ENST00000421141 URB2Q14146 1524 aaKnown RBP13.87□□□□□ -0.19
PTCH1-206ENST00000421141 PSME1Q06323 249 aa13.86□□□□□ -0.19
PTCH1-206ENST00000421141 MIER1Q8N108 512 aa13.86□□□□□ -0.19
PTCH1-206ENST00000421141 HSPA5P11021 654 aaKnown RBP13.86□□□□□ -0.19
PTCH1-206ENST00000421141 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.85□□□□□ -0.19
PTCH1-206ENST00000421141 ANP32BQ92688 251 aaKnown RBP13.85□□□□□ -0.19
PTCH1-206ENST00000421141 RRBP1Q9P2E9 1410 aaKnown RBP13.83□□□□□ -0.2
PTCH1-206ENST00000421141 U2AF1L5P0DN76 240 aaPredicted RBP13.83□□□□□ -0.2
PTCH1-206ENST00000421141 U2AF1Q01081 240 aaKnown RBP eCLIP13.83□□□□□ -0.2
PTCH1-206ENST00000421141 FRAT1Q92837 279 aaPredicted RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms