RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 MYOM3Q5VTT5 1437 aa15.74■□□□□ 0.11
PTPRF-205ENST00000414879 UACAQ9BZF9 1416 aa15.74■□□□□ 0.11
PTPRF-205ENST00000414879 HIRIP3Q9BW71 556 aaPredicted RBP15.74■□□□□ 0.11
PTPRF-205ENST00000414879 CASKIN1Q8WXD9 1431 aa15.73■□□□□ 0.11
PTPRF-205ENST00000414879 MAPK8IP3Q9UPT6 1336 aa15.73■□□□□ 0.11
PTPRF-205ENST00000414879 MS4A1P11836 297 aa15.72■□□□□ 0.11
PTPRF-205ENST00000414879 CUL7Q14999 1698 aa15.72■□□□□ 0.11
PTPRF-205ENST00000414879 STAC3Q96MF2 364 aa15.71■□□□□ 0.11
PTPRF-205ENST00000414879 POLA1P09884 1462 aaPredicted RBP15.71■□□□□ 0.11
PTPRF-205ENST00000414879 SALL2Q9Y467 1007 aaPredicted RBP15.71■□□□□ 0.11
PTPRF-205ENST00000414879 KIF3BO15066 747 aa15.71■□□□□ 0.1
PTPRF-205ENST00000414879 HNRNPMP52272 730 aaKnown RBP eCLIP15.7■□□□□ 0.1
PTPRF-205ENST00000414879 ROCK2O75116 1388 aaKnown RBP15.69■□□□□ 0.1
PTPRF-205ENST00000414879 HAP1P54257 671 aaPredicted RBP15.69■□□□□ 0.1
PTPRF-205ENST00000414879 SCAF1Q9H7N4 1312 aaKnown RBP15.69■□□□□ 0.1
PTPRF-205ENST00000414879 FYCO1Q9BQS8 1478 aa15.69■□□□□ 0.1
PTPRF-205ENST00000414879 AQRO60306 1485 aaKnown RBP eCLIP15.68■□□□□ 0.11e-6■■■■■ 36.8
PTPRF-205ENST00000414879 HDGFL2Q7Z4V5 671 aaPredicted RBP15.66■□□□□ 0.1
PTPRF-205ENST00000414879 WASHC2CQ9Y4E1 1318 aa15.65■□□□□ 0.1
PTPRF-205ENST00000414879 RALBP1Q15311 655 aa15.65■□□□□ 0.1
PTPRF-205ENST00000414879 HSPA5P11021 654 aaKnown RBP15.64■□□□□ 0.09
PTPRF-205ENST00000414879 MLECQ14165 292 aa15.64■□□□□ 0.09
PTPRF-205ENST00000414879 KTN1Q86UP2 1357 aaKnown RBP15.64■□□□□ 0.09
PTPRF-205ENST00000414879 URB2Q14146 1524 aaKnown RBP15.64■□□□□ 0.09
PTPRF-205ENST00000414879 SYNJ2O15056 1496 aa15.64■□□□□ 0.09
PTPRF-205ENST00000414879 HSP90AA1P07900 732 aaKnown RBP15.63■□□□□ 0.09
PTPRF-205ENST00000414879 FGD6Q6ZV73 1430 aa15.63■□□□□ 0.09
PTPRF-205ENST00000414879 SRPK2P78362 688 aaKnown RBP15.63■□□□□ 0.09
PTPRF-205ENST00000414879 CCDC144AA2RUR9 1427 aa15.63■□□□□ 0.09
PTPRF-205ENST00000414879 EID1Q9Y6B2 187 aa15.62■□□□□ 0.09
PTPRF-205ENST00000414879 LRRC9Q6ZRR7 1453 aa15.62■□□□□ 0.09
PTPRF-205ENST00000414879 CHMP4AQ9BY43 222 aa15.6■□□□□ 0.09
PTPRF-205ENST00000414879 KIF21AQ7Z4S6 1674 aa15.6■□□□□ 0.09
PTPRF-205ENST00000414879 MORC1Q86VD1 984 aa15.6■□□□□ 0.09
PTPRF-205ENST00000414879 BCL11AQ9H165 835 aa15.6■□□□□ 0.09
PTPRF-205ENST00000414879 WDR97A6NE52 1622 aa15.59■□□□□ 0.09
PTPRF-205ENST00000414879 PLEKHH2Q8IVE3 1493 aa15.59■□□□□ 0.09
PTPRF-205ENST00000414879 CALD1Q05682 793 aaKnown RBP15.57■□□□□ 0.08
PTPRF-205ENST00000414879 ZBTB7CA1YPR0 619 aa15.57■□□□□ 0.08
PTPRF-205ENST00000414879 PPM1GO15355 546 aaPredicted RBP15.57■□□□□ 0.08
PTPRF-205ENST00000414879 L3MBTL2Q969R5 705 aa15.56■□□□□ 0.08
PTPRF-205ENST00000414879 TERF2IPQ9NYB0 399 aa15.56■□□□□ 0.08
PTPRF-205ENST00000414879 VGFO15240 615 aaPredicted RBP15.56■□□□□ 0.08
PTPRF-205ENST00000414879 DHX57Q6P158 1386 aaKnown RBP15.56■□□□□ 0.08
PTPRF-205ENST00000414879 MIA2Q96PC5 1412 aa15.55■□□□□ 0.08
PTPRF-205ENST00000414879 EHBP1L1Q8N3D4 1523 aa15.54■□□□□ 0.08
PTPRF-205ENST00000414879 KIAA0586Q9BVV6 1533 aa15.54■□□□□ 0.08
PTPRF-205ENST00000414879 PHLDB1Q86UU1 1377 aa15.54■□□□□ 0.08
PTPRF-205ENST00000414879 FTSJ3Q8IY81 847 aaKnown RBP15.54■□□□□ 0.08
PTPRF-205ENST00000414879 PRG4Q92954 1404 aaPredicted RBP15.54■□□□□ 0.08
PTPRF-205ENST00000414879 CC2D1BQ5T0F9 858 aaKnown RBP15.54■□□□□ 0.08
PTPRF-205ENST00000414879 NCOA2Q15596 1464 aa15.53■□□□□ 0.08
PTPRF-205ENST00000414879 ANP32BQ92688 251 aaKnown RBP15.53■□□□□ 0.08
PTPRF-205ENST00000414879 ERICH6BQ5W0A0 696 aa15.52■□□□□ 0.08
PTPRF-205ENST00000414879 HECW1Q76N89 1606 aa15.52■□□□□ 0.07
PTPRF-205ENST00000414879 DDRGK1Q96HY6 314 aa15.52■□□□□ 0.07
PTPRF-205ENST00000414879 FOXD1Q16676 465 aa15.51■□□□□ 0.07
PTPRF-205ENST00000414879 CYB5RLQ6IPT4 315 aa15.51■□□□□ 0.07
PTPRF-205ENST00000414879 SNAPC4Q5SXM2 1469 aa15.5■□□□□ 0.07
PTPRF-205ENST00000414879 U2SURPO15042 1029 aaKnown RBP15.5■□□□□ 0.07
PTPRF-205ENST00000414879 ARAP1Q96P48 1450 aa15.5■□□□□ 0.07
PTPRF-205ENST00000414879 WDR62O43379 1518 aa15.5■□□□□ 0.07
PTPRF-205ENST00000414879 ABCA5Q8WWZ7 1642 aa15.49■□□□□ 0.07
PTPRF-205ENST00000414879 KIF15Q9NS87 1388 aa15.49■□□□□ 0.07
PTPRF-205ENST00000414879 BECN1Q14457 450 aa15.49■□□□□ 0.07
PTPRF-205ENST00000414879 PPP4R2Q9NY27 417 aa15.49■□□□□ 0.07
PTPRF-205ENST00000414879 CASC1Q6TDU7 716 aa15.49■□□□□ 0.07
PTPRF-205ENST00000414879 SENP3Q9H4L4 574 aaPredicted RBP15.49■□□□□ 0.07
PTPRF-205ENST00000414879 MAGI1Q96QZ7 1491 aaPredicted RBP15.48■□□□□ 0.07
PTPRF-205ENST00000414879 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.48■□□□□ 0.07
PTPRF-205ENST00000414879 LMOD2Q6P5Q4 547 aa15.48■□□□□ 0.07
PTPRF-205ENST00000414879 RRBP1Q9P2E9 1410 aaKnown RBP15.48■□□□□ 0.07
PTPRF-205ENST00000414879 TROQ12816 1431 aaPredicted RBP15.47■□□□□ 0.07
PTPRF-205ENST00000414879 CFAP44Q96MT7 982 aa15.47■□□□□ 0.07
PTPRF-205ENST00000414879 CTTNBP2Q8WZ74 1663 aa15.47■□□□□ 0.07
PTPRF-205ENST00000414879 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.47■□□□□ 0.07
PTPRF-205ENST00000414879 STK26Q9P289 416 aa15.46■□□□□ 0.07
PTPRF-205ENST00000414879 ANKRD50Q9ULJ7 1429 aa15.46■□□□□ 0.07
PTPRF-205ENST00000414879 MAP3K1Q13233 1512 aa15.45■□□□□ 0.06
PTPRF-205ENST00000414879 NLRP13Q86W25 1043 aa15.45■□□□□ 0.06
PTPRF-205ENST00000414879 ARHGAP5Q13017 1502 aa15.43■□□□□ 0.06
PTPRF-205ENST00000414879 PDE3BQ13370 1112 aa15.43■□□□□ 0.06
PTPRF-205ENST00000414879 RTF1Q92541 710 aaKnown RBP15.43■□□□□ 0.06
PTPRF-205ENST00000414879 ANP32EQ9BTT0 268 aa15.43■□□□□ 0.06
PTPRF-205ENST00000414879 IPO8O15397 1037 aaKnown RBP15.43■□□□□ 0.06
PTPRF-205ENST00000414879 NEUROD2Q15784 382 aa15.42■□□□□ 0.06
PTPRF-205ENST00000414879 IQGAP2Q13576 1575 aa15.42■□□□□ 0.06
PTPRF-205ENST00000414879 A0A0G2JS52 829 aa15.42■□□□□ 0.06
PTPRF-205ENST00000414879 TNNT2P45379 298 aaPredicted RBP15.42■□□□□ 0.06
PTPRF-205ENST00000414879 TARBP1Q13395 1621 aaKnown RBP15.42■□□□□ 0.06
PTPRF-205ENST00000414879 FAM69CQ0P6D2 419 aa15.41■□□□□ 0.06
PTPRF-205ENST00000414879 SUPT16HQ9Y5B9 1047 aaKnown RBP15.41■□□□□ 0.06
PTPRF-205ENST00000414879 PBRM1Q86U86 1689 aa15.41■□□□□ 0.06
PTPRF-205ENST00000414879 HFM1A2PYH4 1435 aa15.41■□□□□ 0.06
PTPRF-205ENST00000414879 NGEFQ8N5V2 710 aa15.41■□□□□ 0.06
PTPRF-205ENST00000414879 EVC2Q86UK5 1308 aa15.4■□□□□ 0.06
PTPRF-205ENST00000414879 LMOD3Q0VAK6 560 aa15.4■□□□□ 0.06
PTPRF-205ENST00000414879 LAS1LQ9Y4W2 734 aaKnown RBP15.4■□□□□ 0.06
PTPRF-205ENST00000414879 TIAM1Q13009 1591 aa15.39■□□□□ 0.05
PTPRF-205ENST00000414879 SAFB2Q14151 953 aaKnown RBP eCLIP15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms