RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 NEUROD2Q15784 382 aa16.7■□□□□ 0.26
CCDC88A-204ENST00000413716 DCAF1Q9Y4B6 1507 aa16.7■□□□□ 0.26
CCDC88A-204ENST00000413716 VSIG10Q8N0Z9 540 aa16.69■□□□□ 0.26
CCDC88A-204ENST00000413716 TPM1P09493 284 aa16.68■□□□□ 0.26
CCDC88A-204ENST00000413716 TPM2P07951 284 aa16.68■□□□□ 0.26
CCDC88A-204ENST00000413716 GPATCH3Q96I76 525 aa16.67■□□□□ 0.26
CCDC88A-204ENST00000413716 CHIC2Q9UKJ5 165 aa16.67■□□□□ 0.26
CCDC88A-204ENST00000413716 CCDC191Q8NCU4 936 aa16.67■□□□□ 0.26
CCDC88A-204ENST00000413716 CCDC180Q9P1Z9 1646 aa16.66■□□□□ 0.26
CCDC88A-204ENST00000413716 PES1O00541 588 aaKnown RBP16.66■□□□□ 0.26
CCDC88A-204ENST00000413716 TSPY4P0CV99 314 aa16.66■□□□□ 0.26
CCDC88A-204ENST00000413716 TSPY10P0CW01 314 aa16.66■□□□□ 0.26
CCDC88A-204ENST00000413716 TPD52L1Q16890 204 aaPredicted RBP16.65■□□□□ 0.26
CCDC88A-204ENST00000413716 STK11IPQ8N1F8 1099 aa16.65■□□□□ 0.26
CCDC88A-204ENST00000413716 AK7Q96M32 723 aa16.65■□□□□ 0.26
CCDC88A-204ENST00000413716 CDR1P51861 262 aa16.63■□□□□ 0.25
CCDC88A-204ENST00000413716 HIRIP3Q9BW71 556 aaPredicted RBP16.63■□□□□ 0.25
CCDC88A-204ENST00000413716 ANO8Q9HCE9 1232 aaPredicted RBP16.62■□□□□ 0.25
CCDC88A-204ENST00000413716 RUFY1Q96T51 708 aa16.62■□□□□ 0.25
CCDC88A-204ENST00000413716 RDXP35241 583 aaKnown RBP16.62■□□□□ 0.25
CCDC88A-204ENST00000413716 B4GALNT3Q6L9W6 998 aa16.61■□□□□ 0.25
CCDC88A-204ENST00000413716 SENP3Q9H4L4 574 aaPredicted RBP16.61■□□□□ 0.25
CCDC88A-204ENST00000413716 SLKQ9H2G2 1235 aaPredicted RBP16.61■□□□□ 0.25
CCDC88A-204ENST00000413716 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.61■□□□□ 0.25
CCDC88A-204ENST00000413716 TMX4Q9H1E5 349 aaPredicted RBP16.61■□□□□ 0.25
CCDC88A-204ENST00000413716 DCTN1Q14203 1278 aa16.6■□□□□ 0.25
CCDC88A-204ENST00000413716 VPS53Q5VIR6 699 aa16.6■□□□□ 0.25
CCDC88A-204ENST00000413716 CWC15Q9P013 229 aaKnown RBP16.59■□□□□ 0.25
CCDC88A-204ENST00000413716 GOLGA6L19H0YKK7 550 aa16.59■□□□□ 0.25
CCDC88A-204ENST00000413716 KIF3AQ9Y496 699 aa16.58■□□□□ 0.25
CCDC88A-204ENST00000413716 DDX11L8A8MPP1 907 aa16.58■□□□□ 0.24
CCDC88A-204ENST00000413716 KIF16BQ96L93 1317 aa16.57■□□□□ 0.24
CCDC88A-204ENST00000413716 IPO7O95373 1038 aaKnown RBP16.57■□□□□ 0.24
CCDC88A-204ENST00000413716 MTUS2Q5JR59 1369 aa16.57■□□□□ 0.24
CCDC88A-204ENST00000413716 SENP3-EIF4A1A0A087X0R7 540 aa16.57■□□□□ 0.24
CCDC88A-204ENST00000413716 ACBD3Q9H3P7 528 aa16.56■□□□□ 0.24
CCDC88A-204ENST00000413716 LMOD2Q6P5Q4 547 aa16.55■□□□□ 0.24
CCDC88A-204ENST00000413716 U2SURPO15042 1029 aaKnown RBP16.55■□□□□ 0.24
CCDC88A-204ENST00000413716 IPO8O15397 1037 aaKnown RBP16.55■□□□□ 0.24
CCDC88A-204ENST00000413716 TCERG1O14776 1098 aaKnown RBP16.54■□□□□ 0.24
CCDC88A-204ENST00000413716 ABCC9O60706 1549 aa16.53■□□□□ 0.24
CCDC88A-204ENST00000413716 MARCH6O60337 910 aa16.53■□□□□ 0.24
CCDC88A-204ENST00000413716 H0YHG0 523 aa16.53■□□□□ 0.24
CCDC88A-204ENST00000413716 ZNF592Q92610 1267 aa16.52■□□□□ 0.23
CCDC88A-204ENST00000413716 TCEAL9Q9UHQ7 104 aa16.52■□□□□ 0.23
CCDC88A-204ENST00000413716 SF3A1Q15459 793 aaKnown RBP16.51■□□□□ 0.23
CCDC88A-204ENST00000413716 CNKSR2Q8WXI2 1034 aa16.51■□□□□ 0.23
CCDC88A-204ENST00000413716 CSRNP3Q8WYN3 585 aa16.51■□□□□ 0.23
CCDC88A-204ENST00000413716 RBM19Q9Y4C8 960 aaKnown RBP16.51■□□□□ 0.23
CCDC88A-204ENST00000413716 ST18O60284 1047 aa16.51■□□□□ 0.23
CCDC88A-204ENST00000413716 HSP90B2PQ58FF3 399 aa16.5■□□□□ 0.23
CCDC88A-204ENST00000413716 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.5■□□□□ 0.235e-6■■■■■ 52.9
CCDC88A-204ENST00000413716 ARGLU1Q9NWB6 273 aaPredicted RBP16.5■□□□□ 0.23
CCDC88A-204ENST00000413716 APBB1O00213 710 aa16.5■□□□□ 0.23
CCDC88A-204ENST00000413716 GORABQ5T7V8 394 aa16.5■□□□□ 0.23
CCDC88A-204ENST00000413716 RTF1Q92541 710 aaKnown RBP16.5■□□□□ 0.23
CCDC88A-204ENST00000413716 ZRSR2Q15696 482 aaKnown RBP16.49■□□□□ 0.23
CCDC88A-204ENST00000413716 ANKRD20A12PQ8NF67 263 aa16.49■□□□□ 0.23
CCDC88A-204ENST00000413716 POGKQ9P215 609 aa16.49■□□□□ 0.23
CCDC88A-204ENST00000413716 BECN2A8MW95 431 aa16.48■□□□□ 0.23
CCDC88A-204ENST00000413716 TRIM6-TRIM34B2RNG4 842 aa16.48■□□□□ 0.23
CCDC88A-204ENST00000413716 H3BQV1 296 aa16.48■□□□□ 0.23
CCDC88A-204ENST00000413716 IFFO2Q5TF58 517 aa16.48■□□□□ 0.23
CCDC88A-204ENST00000413716 ATP6V1DQ9Y5K8 247 aa16.48■□□□□ 0.23
CCDC88A-204ENST00000413716 WWC1Q8IX03 1113 aa16.47■□□□□ 0.23
CCDC88A-204ENST00000413716 CARD11Q9BXL7 1154 aa16.47■□□□□ 0.23
CCDC88A-204ENST00000413716 NEXNQ0ZGT2 675 aa16.47■□□□□ 0.23
CCDC88A-204ENST00000413716 RWDD1Q9H446 243 aaPredicted RBP16.47■□□□□ 0.23
CCDC88A-204ENST00000413716 CC2D1BQ5T0F9 858 aaKnown RBP16.47■□□□□ 0.23
CCDC88A-204ENST00000413716 MEX3CQ5U5Q3 659 aaKnown RBP16.46■□□□□ 0.23
CCDC88A-204ENST00000413716 MYO6Q9UM54 1294 aa16.46■□□□□ 0.22
CCDC88A-204ENST00000413716 PCMTD1Q96MG8 357 aaPredicted RBP16.45■□□□□ 0.22
CCDC88A-204ENST00000413716 HOMER1Q86YM7 354 aa16.45■□□□□ 0.22
CCDC88A-204ENST00000413716 PLCD4Q9BRC7 762 aa16.45■□□□□ 0.22
CCDC88A-204ENST00000413716 CCDC66A2RUB6 948 aa16.45■□□□□ 0.22
CCDC88A-204ENST00000413716 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.45■□□□□ 0.22
CCDC88A-204ENST00000413716 SKOR2Q2VWA4 1001 aaPredicted RBP16.44■□□□□ 0.22
CCDC88A-204ENST00000413716 ITPRIPQ8IWB1 547 aa16.44■□□□□ 0.22
CCDC88A-204ENST00000413716 CHMP4CQ96CF2 233 aa16.44■□□□□ 0.22
CCDC88A-204ENST00000413716 HOOK1Q9UJC3 728 aaKnown RBP16.44■□□□□ 0.22
CCDC88A-204ENST00000413716 MFAP1P55081 439 aaKnown RBP16.44■□□□□ 0.22
CCDC88A-204ENST00000413716 FAM13BQ9NYF5 915 aa16.44■□□□□ 0.22
CCDC88A-204ENST00000413716 ODF2Q5BJF6 829 aa16.43■□□□□ 0.22
CCDC88A-204ENST00000413716 SCRIBQ14160 1630 aa16.43■□□□□ 0.22
CCDC88A-204ENST00000413716 RGL3Q3MIN7 710 aa16.42■□□□□ 0.22
CCDC88A-204ENST00000413716 MTERF4Q7Z6M4 381 aaKnown RBP16.42■□□□□ 0.22
CCDC88A-204ENST00000413716 HSP90AB3PQ58FF7 597 aa16.42■□□□□ 0.22
CCDC88A-204ENST00000413716 IPO9Q96P70 1041 aaKnown RBP16.42■□□□□ 0.22
CCDC88A-204ENST00000413716 INCENPQ9NQS7 918 aa16.42■□□□□ 0.22
CCDC88A-204ENST00000413716 DYDC1Q8WWB3 177 aa16.41■□□□□ 0.22
CCDC88A-204ENST00000413716 CT47A1Q5JQC4 288 aaPredicted RBP16.41■□□□□ 0.22
CCDC88A-204ENST00000413716 PMFBP1Q8TBY8 1022 aa16.41■□□□□ 0.22
CCDC88A-204ENST00000413716 G3V3G9 751 aa16.4■□□□□ 0.22
CCDC88A-204ENST00000413716 DCAF8Q5TAQ9 597 aa16.4■□□□□ 0.22
CCDC88A-204ENST00000413716 CHMP3Q9Y3E7 222 aa16.4■□□□□ 0.22
CCDC88A-204ENST00000413716 HDAC5Q9UQL6 1122 aa16.4■□□□□ 0.22
CCDC88A-204ENST00000413716 CCDC173Q0VFZ6 552 aa16.39■□□□□ 0.22
CCDC88A-204ENST00000413716 CHMP4AQ9BY43 222 aa16.39■□□□□ 0.22
CCDC88A-204ENST00000413716 PABPN1Q86U42 306 aaKnown RBP eCLIP16.39■□□□□ 0.21
CCDC88A-204ENST00000413716 RSF1Q96T23 1441 aaPredicted RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms