RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 CHMP4AQ9BY43 222 aa16.12■□□□□ 0.17
COL6A3-206ENST00000409809 RWDD1Q9H446 243 aaPredicted RBP16.12■□□□□ 0.17
COL6A3-206ENST00000409809 CEP164Q9UPV0 1460 aa16.11■□□□□ 0.17
COL6A3-206ENST00000409809 PODXL2Q9NZ53 605 aa16.11■□□□□ 0.17
COL6A3-206ENST00000409809 KIAA1211Q6ZU35 1233 aa16.1■□□□□ 0.17
COL6A3-206ENST00000409809 RRP9O43818 475 aaKnown RBP16.1■□□□□ 0.17
COL6A3-206ENST00000409809 BAZ1AQ9NRL2 1556 aaPredicted RBP16.09■□□□□ 0.17
COL6A3-206ENST00000409809 HMMRO75330 724 aa16.09■□□□□ 0.17
COL6A3-206ENST00000409809 TSPY4P0CV99 314 aa16.08■□□□□ 0.17
COL6A3-206ENST00000409809 TSPY10P0CW01 314 aa16.08■□□□□ 0.17
COL6A3-206ENST00000409809 ISY1Q9ULR0 285 aaKnown RBP16.08■□□□□ 0.17
COL6A3-206ENST00000409809 TSPYL1Q9H0U9 437 aa16.08■□□□□ 0.17
COL6A3-206ENST00000409809 PDE3BQ13370 1112 aa16.08■□□□□ 0.16
COL6A3-206ENST00000409809 HMGN5P82970 282 aaKnown RBP16.08■□□□□ 0.16
COL6A3-206ENST00000409809 FAM43AQ8N2R8 423 aa16.08■□□□□ 0.16
COL6A3-206ENST00000409809 CDR1P51861 262 aa16.07■□□□□ 0.16
COL6A3-206ENST00000409809 ST18O60284 1047 aa16.07■□□□□ 0.16
COL6A3-206ENST00000409809 GNL2Q13823 731 aaKnown RBP16.06■□□□□ 0.16
COL6A3-206ENST00000409809 DIAPH3Q9NSV4 1193 aa16.06■□□□□ 0.16
COL6A3-206ENST00000409809 STAG3Q9UJ98 1225 aa16.06■□□□□ 0.16
COL6A3-206ENST00000409809 ROCK2O75116 1388 aaKnown RBP16.05■□□□□ 0.16
COL6A3-206ENST00000409809 ZNF777Q9ULD5 760 aaPredicted RBP16.05■□□□□ 0.16
COL6A3-206ENST00000409809 DHX8Q14562 1220 aaKnown RBP16.04■□□□□ 0.16
COL6A3-206ENST00000409809 PLPPR3Q6T4P5 718 aa16.04■□□□□ 0.16
COL6A3-206ENST00000409809 TNIKQ9UKE5 1360 aa16.03■□□□□ 0.16
COL6A3-206ENST00000409809 KTN1Q86UP2 1357 aaKnown RBP16.03■□□□□ 0.16
COL6A3-206ENST00000409809 DCTN1Q14203 1278 aa16.02■□□□□ 0.16
COL6A3-206ENST00000409809 GZF1Q9H116 711 aaPredicted RBP16.02■□□□□ 0.16
COL6A3-206ENST00000409809 HDAC5Q9UQL6 1122 aa16.02■□□□□ 0.16
COL6A3-206ENST00000409809 TPM1P09493 284 aa16.02■□□□□ 0.16
COL6A3-206ENST00000409809 RALBP1Q15311 655 aa16.02■□□□□ 0.16
COL6A3-206ENST00000409809 FHAD1B1AJZ9 1412 aa16.02■□□□□ 0.16
COL6A3-206ENST00000409809 USP8P40818 1118 aa16.02■□□□□ 0.16
COL6A3-206ENST00000409809 RRP12Q5JTH9 1297 aaKnown RBP16.02■□□□□ 0.15
COL6A3-206ENST00000409809 RDXP35241 583 aaKnown RBP16.01■□□□□ 0.15
COL6A3-206ENST00000409809 RCAN3Q9UKA8 241 aa16.01■□□□□ 0.15
COL6A3-206ENST00000409809 CCDC191Q8NCU4 936 aa16.01■□□□□ 0.15
COL6A3-206ENST00000409809 AK7Q96M32 723 aa16.01■□□□□ 0.15
COL6A3-206ENST00000409809 TSR1Q2NL82 804 aaKnown RBP15.99■□□□□ 0.15
COL6A3-206ENST00000409809 HSP90B2PQ58FF3 399 aa15.99■□□□□ 0.15
COL6A3-206ENST00000409809 BAZ1BQ9UIG0 1483 aaKnown RBP15.99■□□□□ 0.15
COL6A3-206ENST00000409809 OS9Q13438 667 aaPredicted RBP15.98■□□□□ 0.15
COL6A3-206ENST00000409809 SLKQ9H2G2 1235 aaPredicted RBP15.98■□□□□ 0.15
COL6A3-206ENST00000409809 GPATCH3Q96I76 525 aa15.98■□□□□ 0.15
COL6A3-206ENST00000409809 GOLGA6L19H0YKK7 550 aa15.97■□□□□ 0.15
COL6A3-206ENST00000409809 FRAT1Q92837 279 aaPredicted RBP15.97■□□□□ 0.15
COL6A3-206ENST00000409809 KIF27Q86VH2 1401 aa15.97■□□□□ 0.15
COL6A3-206ENST00000409809 ARID3AQ99856 593 aa15.97■□□□□ 0.15
COL6A3-206ENST00000409809 CENPQQ7L2Z9 268 aaPredicted RBP15.96■□□□□ 0.15
COL6A3-206ENST00000409809 CAVIN1Q6NZI2 390 aaKnown RBP15.96■□□□□ 0.15
COL6A3-206ENST00000409809 AAMPQ13685 434 aa15.96■□□□□ 0.15
COL6A3-206ENST00000409809 HSP90B1P14625 803 aaKnown RBP15.96■□□□□ 0.14
COL6A3-206ENST00000409809 ERCC4Q92889 916 aaPredicted RBP15.96■□□□□ 0.14
COL6A3-206ENST00000409809 FAM161AQ3B820 660 aa15.95■□□□□ 0.14
COL6A3-206ENST00000409809 CARD11Q9BXL7 1154 aa15.95■□□□□ 0.14
COL6A3-206ENST00000409809 FAM13BQ9NYF5 915 aa15.94■□□□□ 0.14
COL6A3-206ENST00000409809 PRKCSHP14314 528 aaPredicted RBP15.94■□□□□ 0.14
COL6A3-206ENST00000409809 CCDC39Q9UFE4 941 aa15.94■□□□□ 0.14
COL6A3-206ENST00000409809 MRE11P49959 708 aa15.93■□□□□ 0.14
COL6A3-206ENST00000409809 CCP110O43303 1012 aa15.93■□□□□ 0.14
COL6A3-206ENST00000409809 CCNB3Q8WWL7 1395 aa15.93■□□□□ 0.14
COL6A3-206ENST00000409809 MYO15BQ96JP2 1530 aa15.91■□□□□ 0.14
COL6A3-206ENST00000409809 IPO7O95373 1038 aaKnown RBP15.91■□□□□ 0.14
COL6A3-206ENST00000409809 TPRNQ4KMQ1 711 aa15.9■□□□□ 0.14
COL6A3-206ENST00000409809 CEP89Q96ST8 783 aa15.9■□□□□ 0.14
COL6A3-206ENST00000409809 RUFY1Q96T51 708 aa15.9■□□□□ 0.14
COL6A3-206ENST00000409809 EIF3AQ14152 1382 aaKnown RBP15.9■□□□□ 0.14
COL6A3-206ENST00000409809 CAGE1Q8TC20 777 aa15.89■□□□□ 0.13
COL6A3-206ENST00000409809 TMF1P82094 1093 aa15.89■□□□□ 0.13
COL6A3-206ENST00000409809 KDM2AQ9Y2K7 1162 aa15.89■□□□□ 0.13
COL6A3-206ENST00000409809 DDX49Q9Y6V7 483 aaKnown RBP15.88■□□□□ 0.13
COL6A3-206ENST00000409809 INCENPQ9NQS7 918 aa15.88■□□□□ 0.13
COL6A3-206ENST00000409809 NGEFQ8N5V2 710 aa15.88■□□□□ 0.13
COL6A3-206ENST00000409809 HOOK1Q9UJC3 728 aaKnown RBP15.88■□□□□ 0.13
COL6A3-206ENST00000409809 LEKR1Q6ZMV7 388 aa15.87■□□□□ 0.13
COL6A3-206ENST00000409809 ZBED9Q6R2W3 1325 aa15.87■□□□□ 0.13
COL6A3-206ENST00000409809 CHGAP10645 457 aaKnown RBP15.87■□□□□ 0.13
COL6A3-206ENST00000409809 NAP1L2Q9ULW6 460 aaPredicted RBP15.87■□□□□ 0.13
COL6A3-206ENST00000409809 PDCL2Q8N4E4 241 aa15.86■□□□□ 0.13
COL6A3-206ENST00000409809 WRNQ14191 1432 aaPredicted RBP eCLIP15.86■□□□□ 0.13
COL6A3-206ENST00000409809 STK11IPQ8N1F8 1099 aa15.86■□□□□ 0.13
COL6A3-206ENST00000409809 ANKRD20A12PQ8NF67 263 aa15.86■□□□□ 0.13
COL6A3-206ENST00000409809 DEF6Q9H4E7 631 aa15.86■□□□□ 0.13
COL6A3-206ENST00000409809 H0YHG0 523 aa15.86■□□□□ 0.13
COL6A3-206ENST00000409809 SETD5Q9C0A6 1442 aa15.85■□□□□ 0.13
COL6A3-206ENST00000409809 BECN2A8MW95 431 aa15.85■□□□□ 0.13
COL6A3-206ENST00000409809 LETM1O95202 739 aaPredicted RBP15.85■□□□□ 0.13
COL6A3-206ENST00000409809 SMARCA2P51531 1590 aa15.85■□□□□ 0.13
COL6A3-206ENST00000409809 MYO6Q9UM54 1294 aa15.85■□□□□ 0.13
COL6A3-206ENST00000409809 GOLGA6L7A0A1B0GV03 622 aa15.85■□□□□ 0.13
COL6A3-206ENST00000409809 P3H3Q8IVL6 736 aa15.85■□□□□ 0.13
COL6A3-206ENST00000409809 GOLGA2Q08379 1002 aa15.84■□□□□ 0.13
COL6A3-206ENST00000409809 ZRSR2Q15696 482 aaKnown RBP15.83■□□□□ 0.13
COL6A3-206ENST00000409809 NUCB2P80303 420 aa15.83■□□□□ 0.13
COL6A3-206ENST00000409809 PES1O00541 588 aaKnown RBP15.83■□□□□ 0.12
COL6A3-206ENST00000409809 SPRYD3Q8NCJ5 442 aa15.83■□□□□ 0.12
COL6A3-206ENST00000409809 CHMP7Q8WUX9 453 aaPredicted RBP15.83■□□□□ 0.12
COL6A3-206ENST00000409809 CHMP5Q9NZZ3 219 aa15.82■□□□□ 0.12
COL6A3-206ENST00000409809 NAT10Q9H0A0 1025 aaKnown RBP15.81■□□□□ 0.12
COL6A3-206ENST00000409809 CCDC173Q0VFZ6 552 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms