RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 PLEKHD1A6NEE1 506 aa29.08■■■□□ 2.25
USP39-204ENST00000409766 CAMSAP2Q08AD1 1489 aa29.07■■■□□ 2.24
USP39-204ENST00000409766 CFDP1Q9UEE9 299 aaPredicted RBP29.07■■■□□ 2.24
USP39-204ENST00000409766 MIER1Q8N108 512 aa29.06■■■□□ 2.24
USP39-204ENST00000409766 CLASP1Q7Z460 1538 aa29.04■■■□□ 2.24
USP39-204ENST00000409766 ABCC10Q5T3U5 1492 aa29.03■■■□□ 2.24
USP39-204ENST00000409766 CDC42BPAQ5VT25 1732 aa29.02■■■□□ 2.24
USP39-204ENST00000409766 DENND4BO75064 1496 aaPredicted RBP29.01■■■□□ 2.24
USP39-204ENST00000409766 PPP1R15AO75807 674 aaPredicted RBP29.01■■■□□ 2.24
USP39-204ENST00000409766 ACIN1Q9UKV3 1341 aaKnown RBP28.97■■■□□ 2.23
USP39-204ENST00000409766 TONSLQ96HA7 1378 aa28.96■■■□□ 2.23
USP39-204ENST00000409766 TRIM52Q96A61 297 aa28.96■■■□□ 2.23
USP39-204ENST00000409766 CROCC2H7BZ55 1655 aa28.96■■■□□ 2.23
USP39-204ENST00000409766 ERCC6L2Q5T890 1561 aa28.95■■■□□ 2.23
USP39-204ENST00000409766 ADGBQ8N7X0 1667 aa28.95■■■□□ 2.22
USP39-204ENST00000409766 ZNF777Q9ULD5 760 aaPredicted RBP28.92■■■□□ 2.22
USP39-204ENST00000409766 MPHOSPH9Q99550 1183 aa28.91■■■□□ 2.22
USP39-204ENST00000409766 NCOA1Q15788 1441 aa28.91■■■□□ 2.22
USP39-204ENST00000409766 ADGRL2O95490 1459 aa28.91■■■□□ 2.22
USP39-204ENST00000409766 KDM5BQ9UGL1 1544 aa28.86■■■□□ 2.21
USP39-204ENST00000409766 ABCC2Q92887 1545 aa28.85■■■□□ 2.21
USP39-204ENST00000409766 CENPBP07199 599 aaPredicted RBP28.84■■■□□ 2.21
USP39-204ENST00000409766 SHANK2Q9UPX8 1470 aa28.81■■■□□ 2.2
USP39-204ENST00000409766 ANKRD30AQ9BXX3 1397 aa28.79■■■□□ 2.2
USP39-204ENST00000409766 PREX2Q70Z35 1606 aa28.79■■■□□ 2.2
USP39-204ENST00000409766 CDC42BPBQ9Y5S2 1711 aa28.79■■■□□ 2.2
USP39-204ENST00000409766 ARHGEF5Q12774 1597 aa28.76■■■□□ 2.19
USP39-204ENST00000409766 ANKRD30BQ9BXX2 1392 aa28.75■■■□□ 2.19
USP39-204ENST00000409766 SCAF1Q9H7N4 1312 aaKnown RBP28.74■■■□□ 2.19
USP39-204ENST00000409766 C9orf84Q5VXU9 1444 aa28.74■■■□□ 2.19
USP39-204ENST00000409766 FOXD1Q16676 465 aa28.73■■■□□ 2.19
USP39-204ENST00000409766 SAMD9LQ8IVG5 1584 aa28.73■■■□□ 2.19
USP39-204ENST00000409766 PZPP20742 1482 aa28.73■■■□□ 2.19
USP39-204ENST00000409766 MBD5Q9P267 1494 aa28.73■■■□□ 2.19
USP39-204ENST00000409766 TTC37Q6PGP7 1564 aa28.71■■■□□ 2.19
USP39-204ENST00000409766 SLC4A1APQ9BWU0 796 aaKnown RBP28.71■■■□□ 2.19
USP39-204ENST00000409766 UHRF1BP1LA0JNW5 1464 aa28.71■■■□□ 2.19
USP39-204ENST00000409766 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.71■■■□□ 2.19
USP39-204ENST00000409766 ANKRD50Q9ULJ7 1429 aa28.7■■■□□ 2.18
USP39-204ENST00000409766 YTHDC1Q96MU7 727 aaKnown RBP28.69■■■□□ 2.18
USP39-204ENST00000409766 RPRD2Q5VT52 1461 aaKnown RBP28.68■■■□□ 2.18
USP39-204ENST00000409766 TSPY4P0CV99 314 aa28.67■■■□□ 2.18
USP39-204ENST00000409766 TSPY10P0CW01 314 aa28.67■■■□□ 2.18
USP39-204ENST00000409766 HNRNPMP52272 730 aaKnown RBP eCLIP28.67■■■□□ 2.18
USP39-204ENST00000409766 ZCCHC11Q5TAX3 1644 aaKnown RBP28.66■■■□□ 2.18
USP39-204ENST00000409766 OSCARQ8IYS5 282 aa28.66■■■□□ 2.18
USP39-204ENST00000409766 CCDC141Q6ZP82 1450 aa28.64■■■□□ 2.18
USP39-204ENST00000409766 MYO5CQ9NQX4 1742 aa28.63■■■□□ 2.17
USP39-204ENST00000409766 HIRIP3Q9BW71 556 aaPredicted RBP28.63■■■□□ 2.17
USP39-204ENST00000409766 ARHGAP5Q13017 1502 aa28.61■■■□□ 2.17
USP39-204ENST00000409766 RSPH4AQ5TD94 716 aa28.61■■■□□ 2.17
USP39-204ENST00000409766 L3MBTL2Q969R5 705 aa28.6■■■□□ 2.17
USP39-204ENST00000409766 DDX10Q13206 875 aaKnown RBP28.59■■■□□ 2.17
USP39-204ENST00000409766 KIF15Q9NS87 1388 aa28.58■■■□□ 2.17
USP39-204ENST00000409766 KIAA1107Q9UPP5 1409 aa28.58■■■□□ 2.17
USP39-204ENST00000409766 SYCP2Q9BX26 1530 aa28.57■■■□□ 2.16
USP39-204ENST00000409766 TEX14Q8IWB6 1497 aa28.57■■■□□ 2.16
USP39-204ENST00000409766 KDM5DQ9BY66 1539 aa28.55■■■□□ 2.16
USP39-204ENST00000409766 MAST1Q9Y2H9 1570 aa28.54■■■□□ 2.16
USP39-204ENST00000409766 KCNH8Q96L42 1107 aa28.53■■■□□ 2.16
USP39-204ENST00000409766 PLEKHH2Q8IVE3 1493 aa28.52■■■□□ 2.16
USP39-204ENST00000409766 PKD2Q13563 968 aa28.51■■■□□ 2.15
USP39-204ENST00000409766 NUP155O75694 1391 aa28.5■■■□□ 2.15
USP39-204ENST00000409766 PLCH2O75038 1416 aa28.5■■■□□ 2.15
USP39-204ENST00000409766 ARHGEF12Q9NZN5 1544 aa28.44■■■□□ 2.14
USP39-204ENST00000409766 PLXNC1O60486 1568 aa28.43■■■□□ 2.14
USP39-204ENST00000409766 HSPA5P11021 654 aaKnown RBP28.42■■■□□ 2.14
USP39-204ENST00000409766 NBPF8Q3BBV2 869 aa28.42■■■□□ 2.14
USP39-204ENST00000409766 GTF3C3Q9Y5Q9 886 aa28.41■■■□□ 2.14
USP39-204ENST00000409766 EIF4G2P78344 907 aaKnown RBP eCLIP28.4■■■□□ 2.14
USP39-204ENST00000409766 EFCAB2Q5VUJ9 269 aa28.4■■■□□ 2.14
USP39-204ENST00000409766 ABCC1P33527 1531 aa28.37■■■□□ 2.13
USP39-204ENST00000409766 ARAP3Q8WWN8 1544 aa28.37■■■□□ 2.13
USP39-204ENST00000409766 WDR7Q9Y4E6 1490 aa28.36■■■□□ 2.13
USP39-204ENST00000409766 FAM135AQ9P2D6 1515 aa28.35■■■□□ 2.13
USP39-204ENST00000409766 UNC13BO14795 1591 aa28.35■■■□□ 2.13
USP39-204ENST00000409766 DUOX2Q9NRD8 1548 aa28.31■■■□□ 2.12
USP39-204ENST00000409766 WASHC2AQ641Q2 1341 aa28.3■■■□□ 2.12
USP39-204ENST00000409766 SPATA31E1Q6ZUB1 1445 aa28.27■■■□□ 2.12
USP39-204ENST00000409766 TRAPPC8Q9Y2L5 1435 aa28.27■■■□□ 2.12
USP39-204ENST00000409766 ANP32CO43423 234 aa28.27■■■□□ 2.12
USP39-204ENST00000409766 ABCA9Q8IUA7 1624 aa28.26■■■□□ 2.11
USP39-204ENST00000409766 ERBINQ96RT1 1412 aa28.25■■■□□ 2.11
USP39-204ENST00000409766 IQGAP3Q86VI3 1631 aa28.24■■■□□ 2.11
USP39-204ENST00000409766 CCER2I3L3R5 266 aa28.23■■■□□ 2.11
USP39-204ENST00000409766 UHRF1BP1Q6BDS2 1440 aa28.22■■■□□ 2.11
USP39-204ENST00000409766 MAGI2Q86UL8 1455 aa28.22■■■□□ 2.11
USP39-204ENST00000409766 ASXL2Q76L83 1435 aa28.2■■■□□ 2.11
USP39-204ENST00000409766 RTEL1-TNFRSF6BF6WH68 1400 aa28.19■■■□□ 2.1
USP39-204ENST00000409766 POLR1AO95602 1720 aaPredicted RBP28.18■■■□□ 2.1
USP39-204ENST00000409766 FANCAO15360 1455 aa28.18■■■□□ 2.1
USP39-204ENST00000409766 C11orf95C9JLR9 678 aaPredicted RBP28.18■■■□□ 2.1
USP39-204ENST00000409766 CCDC7Q96M83 1385 aa28.16■■■□□ 2.1
USP39-204ENST00000409766 ZFYVE16Q7Z3T8 1539 aa28.16■■■□□ 2.1
USP39-204ENST00000409766 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.16■■■□□ 2.13e-6■□□□□ 10.3
USP39-204ENST00000409766 SPAG9O60271 1321 aaKnown RBP28.15■■■□□ 2.1
USP39-204ENST00000409766 AFAP1Q8N556 730 aa28.14■■■□□ 2.1
USP39-204ENST00000409766 PLA2R1Q13018 1463 aa28.14■■■□□ 2.09
USP39-204ENST00000409766 RALGAPBQ86X10 1494 aa28.13■■■□□ 2.09
USP39-204ENST00000409766 ZNF326Q5BKZ1 582 aaKnown RBP28.12■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms