RNA–Protein interactions for RNA: ENST00000409472.5

SCAMP4-202, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 2 BASIC

Gene SCAMP4, Length 2,394 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-202ENST00000409472 CDK11AQ9UQ88 783 aaPredicted RBP21.85■■□□□ 1.09
SCAMP4-202ENST00000409472 PPP1R15AO75807 674 aaPredicted RBP21.85■■□□□ 1.09
SCAMP4-202ENST00000409472 GTF3C3Q9Y5Q9 886 aa21.84■■□□□ 1.09
SCAMP4-202ENST00000409472 CAMSAP2Q08AD1 1489 aa21.84■■□□□ 1.09
SCAMP4-202ENST00000409472 KDM5BQ9UGL1 1544 aa21.84■■□□□ 1.09
SCAMP4-202ENST00000409472 HIRIP3Q9BW71 556 aaPredicted RBP21.83■■□□□ 1.09
SCAMP4-202ENST00000409472 GPATCH8Q9UKJ3 1502 aaKnown RBP21.83■■□□□ 1.09
SCAMP4-202ENST00000409472 TONSLQ96HA7 1378 aa21.83■■□□□ 1.08
SCAMP4-202ENST00000409472 ITSN2Q9NZM3 1697 aa21.82■■□□□ 1.08
SCAMP4-202ENST00000409472 TRIM52Q96A61 297 aa21.82■■□□□ 1.08
SCAMP4-202ENST00000409472 TIMELESSQ9UNS1 1208 aa21.82■■□□□ 1.08
SCAMP4-202ENST00000409472 ATP10BO94823 1461 aa21.81■■□□□ 1.08
SCAMP4-202ENST00000409472 FOXD1Q16676 465 aa21.78■■□□□ 1.08
SCAMP4-202ENST00000409472 CFDP1Q9UEE9 299 aaPredicted RBP21.77■■□□□ 1.08
SCAMP4-202ENST00000409472 CDC42BPAQ5VT25 1732 aa21.77■■□□□ 1.08
SCAMP4-202ENST00000409472 ZNF777Q9ULD5 760 aaPredicted RBP21.77■■□□□ 1.08
SCAMP4-202ENST00000409472 ROCK1Q13464 1354 aa21.76■■□□□ 1.07
SCAMP4-202ENST00000409472 ERCC6L2Q5T890 1561 aa21.74■■□□□ 1.07
SCAMP4-202ENST00000409472 CROCC2H7BZ55 1655 aa21.74■■□□□ 1.07
SCAMP4-202ENST00000409472 MPHOSPH9Q99550 1183 aa21.74■■□□□ 1.07
SCAMP4-202ENST00000409472 ABCC10Q5T3U5 1492 aa21.74■■□□□ 1.07
SCAMP4-202ENST00000409472 PTPRGP23470 1445 aa21.72■■□□□ 1.07
SCAMP4-202ENST00000409472 ADGBQ8N7X0 1667 aa21.71■■□□□ 1.07
SCAMP4-202ENST00000409472 SHROOM2Q13796 1616 aa21.7■■□□□ 1.06
SCAMP4-202ENST00000409472 DDX10Q13206 875 aaKnown RBP21.69■■□□□ 1.06
SCAMP4-202ENST00000409472 PLEKHD1A6NEE1 506 aa21.69■■□□□ 1.06
SCAMP4-202ENST00000409472 NCOA1Q15788 1441 aa21.67■■□□□ 1.06
SCAMP4-202ENST00000409472 KCNH8Q96L42 1107 aa21.66■■□□□ 1.06
SCAMP4-202ENST00000409472 ADGRL2O95490 1459 aa21.63■■□□□ 1.05
SCAMP4-202ENST00000409472 PZPP20742 1482 aa21.63■■□□□ 1.05
SCAMP4-202ENST00000409472 ANKRD30BQ9BXX2 1392 aa21.61■■□□□ 1.05
SCAMP4-202ENST00000409472 SLC4A1APQ9BWU0 796 aaKnown RBP21.59■■□□□ 1.05
SCAMP4-202ENST00000409472 CDC42BPBQ9Y5S2 1711 aa21.59■■□□□ 1.05
SCAMP4-202ENST00000409472 L3MBTL2Q969R5 705 aa21.57■■□□□ 1.04
SCAMP4-202ENST00000409472 TTC37Q6PGP7 1564 aa21.56■■□□□ 1.04
SCAMP4-202ENST00000409472 SAMD9LQ8IVG5 1584 aa21.56■■□□□ 1.04
SCAMP4-202ENST00000409472 C9orf84Q5VXU9 1444 aa21.56■■□□□ 1.04
SCAMP4-202ENST00000409472 RPRD2Q5VT52 1461 aaKnown RBP21.56■■□□□ 1.04
SCAMP4-202ENST00000409472 TEX14Q8IWB6 1497 aa21.56■■□□□ 1.04
SCAMP4-202ENST00000409472 PREX2Q70Z35 1606 aa21.55■■□□□ 1.04
SCAMP4-202ENST00000409472 ANKRD30AQ9BXX3 1397 aa21.54■■□□□ 1.04
SCAMP4-202ENST00000409472 CLASP1Q7Z460 1538 aa21.54■■□□□ 1.04
SCAMP4-202ENST00000409472 HNRNPMP52272 730 aaKnown RBP eCLIP21.53■■□□□ 1.042e-12■■□□□ 14.5
SCAMP4-202ENST00000409472 SHANK2Q9UPX8 1470 aa21.53■■□□□ 1.04
SCAMP4-202ENST00000409472 ANKRD50Q9ULJ7 1429 aa21.53■■□□□ 1.04
SCAMP4-202ENST00000409472 ABCC2Q92887 1545 aa21.53■■□□□ 1.04
SCAMP4-202ENST00000409472 MBD5Q9P267 1494 aa21.52■■□□□ 1.04
SCAMP4-202ENST00000409472 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.49■■□□□ 1.036e-6■■■■■ 38.2
SCAMP4-202ENST00000409472 ARHGEF5Q12774 1597 aa21.49■■□□□ 1.03
SCAMP4-202ENST00000409472 HSPA5P11021 654 aaKnown RBP21.48■■□□□ 1.03
SCAMP4-202ENST00000409472 NBPF8Q3BBV2 869 aa21.48■■□□□ 1.03
SCAMP4-202ENST00000409472 SYCP2Q9BX26 1530 aa21.46■■□□□ 1.03
SCAMP4-202ENST00000409472 KIAA1107Q9UPP5 1409 aa21.45■■□□□ 1.02
SCAMP4-202ENST00000409472 KIF15Q9NS87 1388 aa21.45■■□□□ 1.02
SCAMP4-202ENST00000409472 PKD2Q13563 968 aa21.44■■□□□ 1.02
SCAMP4-202ENST00000409472 ARHGAP5Q13017 1502 aa21.44■■□□□ 1.02
SCAMP4-202ENST00000409472 ZCCHC11Q5TAX3 1644 aaKnown RBP21.44■■□□□ 1.02
SCAMP4-202ENST00000409472 CCDC141Q6ZP82 1450 aa21.43■■□□□ 1.02
SCAMP4-202ENST00000409472 WASHC2AQ641Q2 1341 aa21.42■■□□□ 1.02
SCAMP4-202ENST00000409472 MYO5CQ9NQX4 1742 aa21.41■■□□□ 1.02
SCAMP4-202ENST00000409472 TSPY4P0CV99 314 aa21.41■■□□□ 1.02
SCAMP4-202ENST00000409472 TSPY10P0CW01 314 aa21.41■■□□□ 1.02
SCAMP4-202ENST00000409472 NUP155O75694 1391 aa21.41■■□□□ 1.02
SCAMP4-202ENST00000409472 KDM5DQ9BY66 1539 aa21.37■■□□□ 1.01
SCAMP4-202ENST00000409472 EIF4G2P78344 907 aaKnown RBP eCLIP21.37■■□□□ 1.01
SCAMP4-202ENST00000409472 C11orf95C9JLR9 678 aaPredicted RBP21.37■■□□□ 1.01
SCAMP4-202ENST00000409472 ARHGEF12Q9NZN5 1544 aa21.35■■□□□ 1.01
SCAMP4-202ENST00000409472 ANP32CO43423 234 aa21.35■■□□□ 1.01
SCAMP4-202ENST00000409472 UHRF1BP1LA0JNW5 1464 aa21.32■■□□□ 1
SCAMP4-202ENST00000409472 MAST1Q9Y2H9 1570 aa21.3■■□□□ 1
SCAMP4-202ENST00000409472 SPATA31E1Q6ZUB1 1445 aa21.3■■□□□ 1
SCAMP4-202ENST00000409472 ZNF326Q5BKZ1 582 aaKnown RBP21.3■■□□□ 1
SCAMP4-202ENST00000409472 FAM135AQ9P2D6 1515 aa21.29■■□□□ 1
SCAMP4-202ENST00000409472 BCL11AQ9H165 835 aa21.29■■□□□ 1
SCAMP4-202ENST00000409472 CCER2I3L3R5 266 aa21.27■■□□□ 1
SCAMP4-202ENST00000409472 CCDC7Q96M83 1385 aa21.26■□□□□ 0.99
SCAMP4-202ENST00000409472 PLCH2O75038 1416 aa21.25■□□□□ 0.99
SCAMP4-202ENST00000409472 PLXNC1O60486 1568 aa21.25■□□□□ 0.99
SCAMP4-202ENST00000409472 UNC13BO14795 1591 aa21.24■□□□□ 0.99
SCAMP4-202ENST00000409472 CNTLNQ9NXG0 1405 aa21.24■□□□□ 0.99
SCAMP4-202ENST00000409472 ABCC1P33527 1531 aa21.24■□□□□ 0.99
SCAMP4-202ENST00000409472 PLEKHH2Q8IVE3 1493 aa21.23■□□□□ 0.99
SCAMP4-202ENST00000409472 RSPH4AQ5TD94 716 aa21.22■□□□□ 0.99
SCAMP4-202ENST00000409472 POLR1AO95602 1720 aaPredicted RBP21.22■□□□□ 0.99
SCAMP4-202ENST00000409472 BCORL1Q5H9F3 1711 aa21.22■□□□□ 0.99
SCAMP4-202ENST00000409472 TRAPPC8Q9Y2L5 1435 aa21.22■□□□□ 0.99
SCAMP4-202ENST00000409472 KIF7Q2M1P5 1343 aa21.21■□□□□ 0.99
SCAMP4-202ENST00000409472 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.2■□□□□ 0.98
SCAMP4-202ENST00000409472 KDM5CP41229 1560 aa21.19■□□□□ 0.98
SCAMP4-202ENST00000409472 USP47Q96K76 1375 aa21.18■□□□□ 0.98
SCAMP4-202ENST00000409472 PLA2R1Q13018 1463 aa21.17■□□□□ 0.98
SCAMP4-202ENST00000409472 UHRF1BP1Q6BDS2 1440 aa21.16■□□□□ 0.98
SCAMP4-202ENST00000409472 IQGAP3Q86VI3 1631 aa21.16■□□□□ 0.98
SCAMP4-202ENST00000409472 KDM2AQ9Y2K7 1162 aa21.16■□□□□ 0.98
SCAMP4-202ENST00000409472 RALGAPBQ86X10 1494 aa21.16■□□□□ 0.98
SCAMP4-202ENST00000409472 EFCAB2Q5VUJ9 269 aa21.15■□□□□ 0.98
SCAMP4-202ENST00000409472 WDR7Q9Y4E6 1490 aa21.15■□□□□ 0.98
SCAMP4-202ENST00000409472 DUOX2Q9NRD8 1548 aa21.15■□□□□ 0.98
SCAMP4-202ENST00000409472 SUPT16HQ9Y5B9 1047 aaKnown RBP21.14■□□□□ 0.97
SCAMP4-202ENST00000409472 CCDC184Q52MB2 194 aa21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms