RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 ABCC5O15440 1437 aa30.07■■■□□ 2.4
USP39-203ENST00000409470 CAMSAP2Q08AD1 1489 aa30.05■■■□□ 2.4
USP39-203ENST00000409470 ZNF777Q9ULD5 760 aaPredicted RBP30.03■■■□□ 2.4
USP39-203ENST00000409470 ROCK1Q13464 1354 aa30.03■■■□□ 2.4
USP39-203ENST00000409470 ABCC10Q5T3U5 1492 aa30■■■□□ 2.39
USP39-203ENST00000409470 TIMELESSQ9UNS1 1208 aa29.98■■■□□ 2.39
USP39-203ENST00000409470 CDC42BPAQ5VT25 1732 aa29.97■■■□□ 2.39
USP39-203ENST00000409470 KDM6BO15054 1643 aa29.97■■■□□ 2.39
USP39-203ENST00000409470 TRIM52Q96A61 297 aa29.96■■■□□ 2.39
USP39-203ENST00000409470 ABCC2Q92887 1545 aa29.95■■■□□ 2.38
USP39-203ENST00000409470 ACIN1Q9UKV3 1341 aaKnown RBP29.88■■■□□ 2.37
USP39-203ENST00000409470 CROCC2H7BZ55 1655 aa29.86■■■□□ 2.37
USP39-203ENST00000409470 ADGBQ8N7X0 1667 aa29.86■■■□□ 2.37
USP39-203ENST00000409470 TONSLQ96HA7 1378 aa29.84■■■□□ 2.37
USP39-203ENST00000409470 MPHOSPH9Q99550 1183 aa29.82■■■□□ 2.36
USP39-203ENST00000409470 NCOA1Q15788 1441 aa29.82■■■□□ 2.36
USP39-203ENST00000409470 ADGRL2O95490 1459 aa29.8■■■□□ 2.36
USP39-203ENST00000409470 UHRF1BP1LA0JNW5 1464 aa29.79■■■□□ 2.36
USP39-203ENST00000409470 PPP1R15AO75807 674 aaPredicted RBP29.79■■■□□ 2.36
USP39-203ENST00000409470 ANKRD30AQ9BXX3 1397 aa29.79■■■□□ 2.36
USP39-203ENST00000409470 DENND4BO75064 1496 aaPredicted RBP29.78■■■□□ 2.36
USP39-203ENST00000409470 PREX2Q70Z35 1606 aa29.78■■■□□ 2.36
USP39-203ENST00000409470 CDC42BPBQ9Y5S2 1711 aa29.75■■■□□ 2.35
USP39-203ENST00000409470 ZCCHC11Q5TAX3 1644 aaKnown RBP29.74■■■□□ 2.35
USP39-203ENST00000409470 SHANK2Q9UPX8 1470 aa29.74■■■□□ 2.35
USP39-203ENST00000409470 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.73■■■□□ 2.35
USP39-203ENST00000409470 TTC37Q6PGP7 1564 aa29.73■■■□□ 2.35
USP39-203ENST00000409470 TSPY4P0CV99 314 aa29.72■■■□□ 2.35
USP39-203ENST00000409470 TSPY10P0CW01 314 aa29.72■■■□□ 2.35
USP39-203ENST00000409470 C9orf84Q5VXU9 1444 aa29.72■■■□□ 2.35
USP39-203ENST00000409470 HNRNPMP52272 730 aaKnown RBP eCLIP29.72■■■□□ 2.35
USP39-203ENST00000409470 KDM5BQ9UGL1 1544 aa29.71■■■□□ 2.35
USP39-203ENST00000409470 KCNH8Q96L42 1107 aa29.71■■■□□ 2.35
USP39-203ENST00000409470 ARHGEF5Q12774 1597 aa29.7■■■□□ 2.35
USP39-203ENST00000409470 SAMD9LQ8IVG5 1584 aa29.7■■■□□ 2.35
USP39-203ENST00000409470 ARHGAP5Q13017 1502 aa29.68■■■□□ 2.34
USP39-203ENST00000409470 MIER1Q8N108 512 aa29.67■■■□□ 2.34
USP39-203ENST00000409470 SLC4A1APQ9BWU0 796 aaKnown RBP29.67■■■□□ 2.34
USP39-203ENST00000409470 MBD5Q9P267 1494 aa29.66■■■□□ 2.34
USP39-203ENST00000409470 FOXD1Q16676 465 aa29.66■■■□□ 2.34
USP39-203ENST00000409470 MYO5CQ9NQX4 1742 aa29.65■■■□□ 2.34
USP39-203ENST00000409470 ANKRD50Q9ULJ7 1429 aa29.64■■■□□ 2.34
USP39-203ENST00000409470 CCDC141Q6ZP82 1450 aa29.64■■■□□ 2.34
USP39-203ENST00000409470 RSPH4AQ5TD94 716 aa29.63■■■□□ 2.33
USP39-203ENST00000409470 OSCARQ8IYS5 282 aa29.61■■■□□ 2.33
USP39-203ENST00000409470 PZPP20742 1482 aa29.59■■■□□ 2.33
USP39-203ENST00000409470 ANKRD30BQ9BXX2 1392 aa29.58■■■□□ 2.33
USP39-203ENST00000409470 SYCP2Q9BX26 1530 aa29.58■■■□□ 2.33
USP39-203ENST00000409470 KIF15Q9NS87 1388 aa29.57■■■□□ 2.32
USP39-203ENST00000409470 PLEKHH2Q8IVE3 1493 aa29.55■■■□□ 2.32
USP39-203ENST00000409470 PLCH2O75038 1416 aa29.54■■■□□ 2.32
USP39-203ENST00000409470 KIAA1107Q9UPP5 1409 aa29.51■■■□□ 2.32
USP39-203ENST00000409470 RPRD2Q5VT52 1461 aaKnown RBP29.49■■■□□ 2.31
USP39-203ENST00000409470 EFCAB2Q5VUJ9 269 aa29.49■■■□□ 2.31
USP39-203ENST00000409470 NUP155O75694 1391 aa29.47■■■□□ 2.31
USP39-203ENST00000409470 MAST1Q9Y2H9 1570 aa29.47■■■□□ 2.31
USP39-203ENST00000409470 WDR7Q9Y4E6 1490 aa29.46■■■□□ 2.31
USP39-203ENST00000409470 PKD2Q13563 968 aa29.45■■■□□ 2.31
USP39-203ENST00000409470 L3MBTL2Q969R5 705 aa29.45■■■□□ 2.31
USP39-203ENST00000409470 HIRIP3Q9BW71 556 aaPredicted RBP29.44■■■□□ 2.3
USP39-203ENST00000409470 ARHGEF12Q9NZN5 1544 aa29.41■■■□□ 2.3
USP39-203ENST00000409470 KDM5DQ9BY66 1539 aa29.41■■■□□ 2.3
USP39-203ENST00000409470 CENPBP07199 599 aaPredicted RBP29.4■■■□□ 2.3
USP39-203ENST00000409470 ABCC1P33527 1531 aa29.37■■■□□ 2.29
USP39-203ENST00000409470 ARAP3Q8WWN8 1544 aa29.37■■■□□ 2.29
USP39-203ENST00000409470 PLXNC1O60486 1568 aa29.36■■■□□ 2.29
USP39-203ENST00000409470 TEX14Q8IWB6 1497 aa29.36■■■□□ 2.29
USP39-203ENST00000409470 YTHDC1Q96MU7 727 aaKnown RBP29.35■■■□□ 2.29
USP39-203ENST00000409470 DDX10Q13206 875 aaKnown RBP29.33■■■□□ 2.29
USP39-203ENST00000409470 ASXL2Q76L83 1435 aa29.33■■■□□ 2.29
USP39-203ENST00000409470 NPM1P06748 294 aaKnown RBP eCLIP29.33■■■□□ 2.29
USP39-203ENST00000409470 ABCA9Q8IUA7 1624 aa29.3■■■□□ 2.28
USP39-203ENST00000409470 TRAPPC8Q9Y2L5 1435 aa29.3■■■□□ 2.28
USP39-203ENST00000409470 DUOX2Q9NRD8 1548 aa29.28■■■□□ 2.28
USP39-203ENST00000409470 FAM135AQ9P2D6 1515 aa29.27■■■□□ 2.28
USP39-203ENST00000409470 FANCAO15360 1455 aa29.25■■■□□ 2.27
USP39-203ENST00000409470 UNC13BO14795 1591 aa29.25■■■□□ 2.27
USP39-203ENST00000409470 NBPF8Q3BBV2 869 aa29.23■■■□□ 2.27
USP39-203ENST00000409470 SPAG9O60271 1321 aaKnown RBP29.23■■■□□ 2.27
USP39-203ENST00000409470 HSPA5P11021 654 aaKnown RBP29.22■■■□□ 2.27
USP39-203ENST00000409470 EIF4G2P78344 907 aaKnown RBP eCLIP29.22■■■□□ 2.27
USP39-203ENST00000409470 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.22■■■□□ 2.273e-6■□□□□ 10.3
USP39-203ENST00000409470 ERBINQ96RT1 1412 aa29.22■■■□□ 2.27
USP39-203ENST00000409470 AFAP1Q8N556 730 aa29.2■■■□□ 2.27
USP39-203ENST00000409470 RTEL1-TNFRSF6BF6WH68 1400 aa29.18■■■□□ 2.26
USP39-203ENST00000409470 ADGRL1O94910 1474 aa29.14■■■□□ 2.26
USP39-203ENST00000409470 ZFYVE16Q7Z3T8 1539 aa29.14■■■□□ 2.26
USP39-203ENST00000409470 IQGAP3Q86VI3 1631 aa29.14■■■□□ 2.25
USP39-203ENST00000409470 SCAPERQ9BY12 1400 aa29.11■■■□□ 2.25
USP39-203ENST00000409470 MAGI2Q86UL8 1455 aa29.1■■■□□ 2.25
USP39-203ENST00000409470 ZNF326Q5BKZ1 582 aaKnown RBP29.09■■■□□ 2.25
USP39-203ENST00000409470 MYT1LQ9UL68 1186 aa29.08■■■□□ 2.25
USP39-203ENST00000409470 SCAF1Q9H7N4 1312 aaKnown RBP29.08■■■□□ 2.25
USP39-203ENST00000409470 ATP7AQ04656 1500 aa29.07■■■□□ 2.24
USP39-203ENST00000409470 CCDC144AA2RUR9 1427 aa29.06■■■□□ 2.24
USP39-203ENST00000409470 INO80Q9ULG1 1556 aaPredicted RBP29.05■■■□□ 2.24
USP39-203ENST00000409470 CD109Q6YHK3 1445 aa29.04■■■□□ 2.24
USP39-203ENST00000409470 WASHC2AQ641Q2 1341 aa29.03■■■□□ 2.24
USP39-203ENST00000409470 ANP32CO43423 234 aa29.03■■■□□ 2.24
USP39-203ENST00000409470 UHRF1BP1Q6BDS2 1440 aa29.01■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms