RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 HNRNPMP52272 730 aaKnown RBP eCLIP17.86■□□□□ 0.45
PTPRN-202ENST00000409251 SYNJ2O15056 1496 aa17.86■□□□□ 0.45
PTPRN-202ENST00000409251 DISP1Q96F81 1524 aa17.85■□□□□ 0.45
PTPRN-202ENST00000409251 CARMIL2Q6F5E8 1435 aa17.83■□□□□ 0.44
PTPRN-202ENST00000409251 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.83■□□□□ 0.44
PTPRN-202ENST00000409251 SAMD9Q5K651 1589 aa17.82■□□□□ 0.44
PTPRN-202ENST00000409251 TONSLQ96HA7 1378 aa17.82■□□□□ 0.44
PTPRN-202ENST00000409251 EIF5BO60841 1220 aaKnown RBP17.81■□□□□ 0.44
PTPRN-202ENST00000409251 SLC4A1APQ9BWU0 796 aaKnown RBP17.81■□□□□ 0.44
PTPRN-202ENST00000409251 CEP170Q5SW79 1584 aa17.8■□□□□ 0.44
PTPRN-202ENST00000409251 PTPRGP23470 1445 aa17.8■□□□□ 0.44
PTPRN-202ENST00000409251 SALL2Q9Y467 1007 aaPredicted RBP17.79■□□□□ 0.44
PTPRN-202ENST00000409251 NUP153P49790 1475 aaKnown RBP17.78■□□□□ 0.44
PTPRN-202ENST00000409251 CCDC18Q5T9S5 1454 aa17.78■□□□□ 0.44
PTPRN-202ENST00000409251 MAP3K1Q13233 1512 aa17.78■□□□□ 0.44
PTPRN-202ENST00000409251 MAGI1Q96QZ7 1491 aaPredicted RBP17.78■□□□□ 0.44
PTPRN-202ENST00000409251 LRRIQ1Q96JM4 1722 aa17.78■□□□□ 0.44
PTPRN-202ENST00000409251 CFAP43Q8NDM7 1665 aa17.77■□□□□ 0.44
PTPRN-202ENST00000409251 PAK3O75914 559 aaPredicted RBP17.77■□□□□ 0.44
PTPRN-202ENST00000409251 MPHOSPH9Q99550 1183 aa17.76■□□□□ 0.43
PTPRN-202ENST00000409251 NOP58Q9Y2X3 529 aaKnown RBP17.74■□□□□ 0.43
PTPRN-202ENST00000409251 LAS1LQ9Y4W2 734 aaKnown RBP17.73■□□□□ 0.43
PTPRN-202ENST00000409251 KIAA0556O60303 1618 aa17.73■□□□□ 0.43
PTPRN-202ENST00000409251 MAPKBP1O60336 1514 aa17.73■□□□□ 0.43
PTPRN-202ENST00000409251 NAIPQ13075 1403 aa17.72■□□□□ 0.43
PTPRN-202ENST00000409251 IL27Q8NEV9 243 aa17.72■□□□□ 0.43
PTPRN-202ENST00000409251 HECW1Q76N89 1606 aa17.72■□□□□ 0.43
PTPRN-202ENST00000409251 TSPY4P0CV99 314 aa17.72■□□□□ 0.43
PTPRN-202ENST00000409251 TSPY10P0CW01 314 aa17.72■□□□□ 0.43
PTPRN-202ENST00000409251 KDM2AQ9Y2K7 1162 aa17.72■□□□□ 0.43
PTPRN-202ENST00000409251 EHBP1L1Q8N3D4 1523 aa17.71■□□□□ 0.43
PTPRN-202ENST00000409251 UGGT2Q9NYU1 1516 aa17.71■□□□□ 0.43
PTPRN-202ENST00000409251 PPP1R15AO75807 674 aaPredicted RBP17.7■□□□□ 0.42
PTPRN-202ENST00000409251 SUPT6HQ7KZ85 1726 aaKnown RBP17.7■□□□□ 0.42
PTPRN-202ENST00000409251 ANP32AP39687 249 aaKnown RBP17.69■□□□□ 0.42
PTPRN-202ENST00000409251 PTPN23Q9H3S7 1636 aa17.68■□□□□ 0.42
PTPRN-202ENST00000409251 FANCIQ9NVI1 1328 aa17.67■□□□□ 0.42
PTPRN-202ENST00000409251 SENP3Q9H4L4 574 aaPredicted RBP17.66■□□□□ 0.42
PTPRN-202ENST00000409251 ARHGEF11O15085 1522 aa17.66■□□□□ 0.42
PTPRN-202ENST00000409251 ZBTB47Q9UFB7 747 aaPredicted RBP17.66■□□□□ 0.42
PTPRN-202ENST00000409251 L3MBTL2Q969R5 705 aa17.66■□□□□ 0.42
PTPRN-202ENST00000409251 RGL3Q3MIN7 710 aa17.65■□□□□ 0.42
PTPRN-202ENST00000409251 MRS2Q9HD23 443 aa17.65■□□□□ 0.42
PTPRN-202ENST00000409251 PKD2Q13563 968 aa17.65■□□□□ 0.42
PTPRN-202ENST00000409251 NUP160Q12769 1436 aa17.65■□□□□ 0.42
PTPRN-202ENST00000409251 HFM1A2PYH4 1435 aa17.64■□□□□ 0.41
PTPRN-202ENST00000409251 PPP4R2Q9NY27 417 aa17.64■□□□□ 0.41
PTPRN-202ENST00000409251 TROQ12816 1431 aaPredicted RBP17.63■□□□□ 0.41
PTPRN-202ENST00000409251 ERCC6L2Q5T890 1561 aa17.63■□□□□ 0.41
PTPRN-202ENST00000409251 ATP10BO94823 1461 aa17.62■□□□□ 0.41
PTPRN-202ENST00000409251 RAPGEF6Q8TEU7 1601 aa17.62■□□□□ 0.41
PTPRN-202ENST00000409251 ABCC5O15440 1437 aa17.61■□□□□ 0.41
PTPRN-202ENST00000409251 CCDC184Q52MB2 194 aa17.61■□□□□ 0.41
PTPRN-202ENST00000409251 UACAQ9BZF9 1416 aa17.59■□□□□ 0.41
PTPRN-202ENST00000409251 KDM6BO15054 1643 aa17.59■□□□□ 0.41
PTPRN-202ENST00000409251 DAPK1P53355 1430 aa17.59■□□□□ 0.41
PTPRN-202ENST00000409251 CCER2I3L3R5 266 aa17.58■□□□□ 0.41
PTPRN-202ENST00000409251 KIF14Q15058 1648 aa17.58■□□□□ 0.4
PTPRN-202ENST00000409251 NUP155O75694 1391 aa17.56■□□□□ 0.4
PTPRN-202ENST00000409251 GPATCH8Q9UKJ3 1502 aaKnown RBP17.56■□□□□ 0.4
PTPRN-202ENST00000409251 AFAP1Q8N556 730 aa17.55■□□□□ 0.4
PTPRN-202ENST00000409251 HSPA5P11021 654 aaKnown RBP17.54■□□□□ 0.4
PTPRN-202ENST00000409251 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.54■□□□□ 0.4
PTPRN-202ENST00000409251 NEFMP07197 916 aa17.53■□□□□ 0.4
PTPRN-202ENST00000409251 CAMSAP2Q08AD1 1489 aa17.52■□□□□ 0.4
PTPRN-202ENST00000409251 MIA2Q96PC5 1412 aa17.52■□□□□ 0.4
PTPRN-202ENST00000409251 NBPF8Q3BBV2 869 aa17.52■□□□□ 0.39
PTPRN-202ENST00000409251 CHD1O14646 1710 aa17.51■□□□□ 0.39
PTPRN-202ENST00000409251 CYB5RLQ6IPT4 315 aa17.49■□□□□ 0.39
PTPRN-202ENST00000409251 OSCARQ8IYS5 282 aa17.48■□□□□ 0.39
PTPRN-202ENST00000409251 ARXQ96QS3 562 aa17.48■□□□□ 0.39
PTPRN-202ENST00000409251 ANKRD30AQ9BXX3 1397 aa17.48■□□□□ 0.39
PTPRN-202ENST00000409251 NPM1P06748 294 aaKnown RBP eCLIP17.48■□□□□ 0.39
PTPRN-202ENST00000409251 DCAF11Q8TEB1 546 aa17.47■□□□□ 0.39
PTPRN-202ENST00000409251 EIF4G2P78344 907 aaKnown RBP eCLIP17.45■□□□□ 0.38
PTPRN-202ENST00000409251 KIF15Q9NS87 1388 aa17.45■□□□□ 0.38
PTPRN-202ENST00000409251 NCOA1Q15788 1441 aa17.44■□□□□ 0.38
PTPRN-202ENST00000409251 ANKRD50Q9ULJ7 1429 aa17.44■□□□□ 0.38
PTPRN-202ENST00000409251 C11orf95C9JLR9 678 aaPredicted RBP17.43■□□□□ 0.38
PTPRN-202ENST00000409251 TCOF1Q13428 1488 aaKnown RBP17.42■□□□□ 0.38
PTPRN-202ENST00000409251 DAXXQ9UER7 740 aaPredicted RBP17.42■□□□□ 0.38
PTPRN-202ENST00000409251 C9orf84Q5VXU9 1444 aa17.42■□□□□ 0.38
PTPRN-202ENST00000409251 IPO9Q96P70 1041 aaKnown RBP17.41■□□□□ 0.38
PTPRN-202ENST00000409251 EFCAB2Q5VUJ9 269 aa17.41■□□□□ 0.38
PTPRN-202ENST00000409251 ARHGAP5Q13017 1502 aa17.41■□□□□ 0.38
PTPRN-202ENST00000409251 SLC4A3P48751 1232 aa17.4■□□□□ 0.38
PTPRN-202ENST00000409251 AKNAQ7Z591 1439 aa17.4■□□□□ 0.38
PTPRN-202ENST00000409251 DENND4BO75064 1496 aaPredicted RBP17.39■□□□□ 0.38
PTPRN-202ENST00000409251 CHGAP10645 457 aaKnown RBP17.38■□□□□ 0.37
PTPRN-202ENST00000409251 BRPF3Q9ULD4 1205 aa17.38■□□□□ 0.37
PTPRN-202ENST00000409251 TIMELESSQ9UNS1 1208 aa17.37■□□□□ 0.37
PTPRN-202ENST00000409251 ABCA8O94911 1581 aa17.37■□□□□ 0.37
PTPRN-202ENST00000409251 SKAP1Q86WV1 359 aa17.36■□□□□ 0.37
PTPRN-202ENST00000409251 ANKRD30BQ9BXX2 1392 aa17.35■□□□□ 0.37
PTPRN-202ENST00000409251 WASHC2AQ641Q2 1341 aa17.35■□□□□ 0.37
PTPRN-202ENST00000409251 CARD11Q9BXL7 1154 aa17.35■□□□□ 0.37
PTPRN-202ENST00000409251 KIF3BO15066 747 aa17.34■□□□□ 0.37
PTPRN-202ENST00000409251 SPAG9O60271 1321 aaKnown RBP17.33■□□□□ 0.37
PTPRN-202ENST00000409251 GGT6Q6P531 493 aa17.33■□□□□ 0.36
PTPRN-202ENST00000409251 ROCK1Q13464 1354 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms