RNA–Protein interactions for RNA: ENST00000400000.6

VAPA-202, Transcript of VAMP associated protein A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAPA, Length 6,815 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-202ENST00000400000 MYO15BQ96JP2 1530 aa17.57■□□□□ 0.4
VAPA-202ENST00000400000 CEP162Q5TB80 1403 aa17.56■□□□□ 0.4
VAPA-202ENST00000400000 FOXD4L1Q9NU39 408 aa17.56■□□□□ 0.4
VAPA-202ENST00000400000 ANP32EQ9BTT0 268 aa17.56■□□□□ 0.4
VAPA-202ENST00000400000 NOP58Q9Y2X3 529 aaKnown RBP17.55■□□□□ 0.4
VAPA-202ENST00000400000 TMF1P82094 1093 aa17.55■□□□□ 0.4
VAPA-202ENST00000400000 HSP90B1P14625 803 aaKnown RBP17.54■□□□□ 0.4
VAPA-202ENST00000400000 G3V3G9 751 aa17.53■□□□□ 0.4
VAPA-202ENST00000400000 DCAF8Q5TAQ9 597 aa17.53■□□□□ 0.4
VAPA-202ENST00000400000 CCNB3Q8WWL7 1395 aa17.53■□□□□ 0.4
VAPA-202ENST00000400000 KANK1Q14678 1352 aa17.52■□□□□ 0.39
VAPA-202ENST00000400000 MSH5O43196 834 aa17.52■□□□□ 0.39
VAPA-202ENST00000400000 ITPRIPQ8IWB1 547 aa17.52■□□□□ 0.39
VAPA-202ENST00000400000 BAZ1BQ9UIG0 1483 aaKnown RBP17.51■□□□□ 0.39
VAPA-202ENST00000400000 PPP4R2Q9NY27 417 aa17.51■□□□□ 0.39
VAPA-202ENST00000400000 WWC1Q8IX03 1113 aa17.5■□□□□ 0.39
VAPA-202ENST00000400000 FBXO3Q9UK99 471 aa17.5■□□□□ 0.39
VAPA-202ENST00000400000 FOXD4L5Q5VV16 416 aaPredicted RBP17.5■□□□□ 0.39
VAPA-202ENST00000400000 FOXD4L4Q8WXT5 416 aaPredicted RBP17.5■□□□□ 0.39
VAPA-202ENST00000400000 CCDC146Q8IYE0 955 aa17.49■□□□□ 0.39
VAPA-202ENST00000400000 SLC4A10Q6U841 1118 aa17.49■□□□□ 0.39
VAPA-202ENST00000400000 GORABQ5T7V8 394 aa17.49■□□□□ 0.39
VAPA-202ENST00000400000 GOLGA3Q08378 1498 aa17.49■□□□□ 0.39
VAPA-202ENST00000400000 MCCP23508 829 aa17.48■□□□□ 0.39
VAPA-202ENST00000400000 TMX4Q9H1E5 349 aaPredicted RBP17.48■□□□□ 0.39
VAPA-202ENST00000400000 U2AF1L5P0DN76 240 aaPredicted RBP17.48■□□□□ 0.39
VAPA-202ENST00000400000 U2AF1Q01081 240 aaKnown RBP eCLIP17.48■□□□□ 0.391e-9■■■□□ 16.4
VAPA-202ENST00000400000 TAF7LQ5H9L4 462 aa17.48■□□□□ 0.39
VAPA-202ENST00000400000 PNNQ9H307 717 aaKnown RBP17.48■□□□□ 0.39
VAPA-202ENST00000400000 SLKQ9H2G2 1235 aaPredicted RBP17.47■□□□□ 0.39
VAPA-202ENST00000400000 VPS53Q5VIR6 699 aa17.47■□□□□ 0.39
VAPA-202ENST00000400000 KLHL34Q8N239 644 aa17.46■□□□□ 0.39
VAPA-202ENST00000400000 HDGFP51858 240 aaKnown RBP17.46■□□□□ 0.39
VAPA-202ENST00000400000 KIAA1211Q6ZU35 1233 aa17.46■□□□□ 0.39
VAPA-202ENST00000400000 NOC3LQ8WTT2 800 aaKnown RBP17.46■□□□□ 0.39
VAPA-202ENST00000400000 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.46■□□□□ 0.39
VAPA-202ENST00000400000 TRIM6-TRIM34B2RNG4 842 aa17.46■□□□□ 0.38
VAPA-202ENST00000400000 MSNP26038 577 aaKnown RBP17.45■□□□□ 0.38
VAPA-202ENST00000400000 HDGFL2Q7Z4V5 671 aaPredicted RBP17.44■□□□□ 0.38
VAPA-202ENST00000400000 TOMM22Q9NS69 142 aa17.43■□□□□ 0.38
VAPA-202ENST00000400000 CLUAP1Q96AJ1 413 aa17.42■□□□□ 0.38
VAPA-202ENST00000400000 NRDCO43847 1150 aa17.42■□□□□ 0.38
VAPA-202ENST00000400000 WRNQ14191 1432 aaPredicted RBP eCLIP17.42■□□□□ 0.38
VAPA-202ENST00000400000 HSPA5P11021 654 aaKnown RBP17.42■□□□□ 0.38
VAPA-202ENST00000400000 MFAP1P55081 439 aaKnown RBP17.41■□□□□ 0.38
VAPA-202ENST00000400000 KIF27Q86VH2 1401 aa17.41■□□□□ 0.38
VAPA-202ENST00000400000 CHAF1AQ13111 956 aaPredicted RBP17.41■□□□□ 0.38
VAPA-202ENST00000400000 NGEFQ8N5V2 710 aa17.41■□□□□ 0.38
VAPA-202ENST00000400000 RB1CC1Q8TDY2 1594 aa17.41■□□□□ 0.38
VAPA-202ENST00000400000 FRAT2O75474 233 aaPredicted RBP17.41■□□□□ 0.38
VAPA-202ENST00000400000 PKD2Q13563 968 aa17.4■□□□□ 0.38
VAPA-202ENST00000400000 RAD21O60216 631 aa17.39■□□□□ 0.38
VAPA-202ENST00000400000 NGDNQ8NEJ9 315 aaKnown RBP17.39■□□□□ 0.37
VAPA-202ENST00000400000 MS4A1P11836 297 aa17.39■□□□□ 0.37
VAPA-202ENST00000400000 AEBP2Q6ZN18 517 aaPredicted RBP17.39■□□□□ 0.37
VAPA-202ENST00000400000 CHMP4BQ9H444 224 aaKnown RBP17.39■□□□□ 0.37
VAPA-202ENST00000400000 GTF2E1P29083 439 aaPredicted RBP17.38■□□□□ 0.37
VAPA-202ENST00000400000 FOXD4L6Q3SYB3 417 aaPredicted RBP17.38■□□□□ 0.37
VAPA-202ENST00000400000 FOXD4L3Q6VB84 417 aaPredicted RBP17.38■□□□□ 0.37
VAPA-202ENST00000400000 RASSF8Q8NHQ8 419 aa17.38■□□□□ 0.37
VAPA-202ENST00000400000 KIAA2012Q0VF49 1180 aa17.38■□□□□ 0.37
VAPA-202ENST00000400000 PHF23Q9BUL5 403 aaPredicted RBP17.37■□□□□ 0.37
VAPA-202ENST00000400000 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.37■□□□□ 0.37
VAPA-202ENST00000400000 RRP7AQ9Y3A4 280 aaKnown RBP17.35■□□□□ 0.37
VAPA-202ENST00000400000 HNRNPMP52272 730 aaKnown RBP eCLIP17.35■□□□□ 0.377e-9■■■■□ 24.6
VAPA-202ENST00000400000 KIF3BO15066 747 aa17.34■□□□□ 0.37
VAPA-202ENST00000400000 ROCK2O75116 1388 aaKnown RBP17.34■□□□□ 0.37
VAPA-202ENST00000400000 DEKP35659 375 aaKnown RBP17.33■□□□□ 0.37
VAPA-202ENST00000400000 ELL2O00472 640 aaPredicted RBP17.33■□□□□ 0.36
VAPA-202ENST00000400000 MEX3CQ5U5Q3 659 aaKnown RBP17.33■□□□□ 0.36
VAPA-202ENST00000400000 SYTL4Q96C24 671 aaPredicted RBP17.32■□□□□ 0.36
VAPA-202ENST00000400000 AMPHP49418 695 aa17.32■□□□□ 0.36
VAPA-202ENST00000400000 FBXW7Q969H0 707 aa17.32■□□□□ 0.36
VAPA-202ENST00000400000 SMC4Q9NTJ3 1288 aa17.32■□□□□ 0.36
VAPA-202ENST00000400000 NECTIN2Q92692 538 aa17.32■□□□□ 0.36
VAPA-202ENST00000400000 EVA1CP58658 441 aa17.31■□□□□ 0.36
VAPA-202ENST00000400000 CUX2O14529 1486 aa17.3■□□□□ 0.36
VAPA-202ENST00000400000 PES1O00541 588 aaKnown RBP17.3■□□□□ 0.36
VAPA-202ENST00000400000 A0A0U1RQG5 324 aaPredicted RBP17.3■□□□□ 0.36
VAPA-202ENST00000400000 SAMD1Q6SPF0 538 aaPredicted RBP17.29■□□□□ 0.36
VAPA-202ENST00000400000 MARCH6O60337 910 aa17.29■□□□□ 0.36
VAPA-202ENST00000400000 STK31Q9BXU1 1019 aa17.29■□□□□ 0.36
VAPA-202ENST00000400000 L1TD1Q5T7N2 865 aaKnown RBP17.28■□□□□ 0.36
VAPA-202ENST00000400000 KTN1Q86UP2 1357 aaKnown RBP17.28■□□□□ 0.36
VAPA-202ENST00000400000 EID1Q9Y6B2 187 aa17.27■□□□□ 0.36
VAPA-202ENST00000400000 TRAK1Q9UPV9 953 aa17.27■□□□□ 0.36
VAPA-202ENST00000400000 BCL2L13Q9BXK5 485 aa17.27■□□□□ 0.36
VAPA-202ENST00000400000 IPO8O15397 1037 aaKnown RBP17.27■□□□□ 0.35
VAPA-202ENST00000400000 SPAG9O60271 1321 aaKnown RBP17.26■□□□□ 0.35
VAPA-202ENST00000400000 RCAN3Q9UKA8 241 aa17.26■□□□□ 0.35
VAPA-202ENST00000400000 WASHC2CQ9Y4E1 1318 aa17.24■□□□□ 0.35
VAPA-202ENST00000400000 CYB5RLQ6IPT4 315 aa17.24■□□□□ 0.35
VAPA-202ENST00000400000 CARMIL1Q5VZK9 1371 aa17.24■□□□□ 0.35
VAPA-202ENST00000400000 RILPL2Q969X0 211 aa17.24■□□□□ 0.35
VAPA-202ENST00000400000 KANK4Q5T7N3 995 aaPredicted RBP17.22■□□□□ 0.35
VAPA-202ENST00000400000 RBM19Q9Y4C8 960 aaKnown RBP17.22■□□□□ 0.35
VAPA-202ENST00000400000 EEA1Q15075 1411 aa17.22■□□□□ 0.35
VAPA-202ENST00000400000 GPATCH3Q96I76 525 aa17.21■□□□□ 0.35
VAPA-202ENST00000400000 NUP155O75694 1391 aa17.21■□□□□ 0.35
VAPA-202ENST00000400000 TCERG1O14776 1098 aaKnown RBP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 613 ms