RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 WIZO95785 1651 aa11.98□□□□□ -0.49
COL28A1-201ENST00000399429 SKAP1Q86WV1 359 aa11.97□□□□□ -0.49
COL28A1-201ENST00000399429 FAM13BQ9NYF5 915 aa11.95□□□□□ -0.5
COL28A1-201ENST00000399429 CDK11BP21127 795 aaKnown RBP11.94□□□□□ -0.5
COL28A1-201ENST00000399429 C11orf95C9JLR9 678 aaPredicted RBP11.94□□□□□ -0.5
COL28A1-201ENST00000399429 RRP9O43818 475 aaKnown RBP11.93□□□□□ -0.5
COL28A1-201ENST00000399429 HSP90AB1P08238 724 aaKnown RBP11.92□□□□□ -0.5
COL28A1-201ENST00000399429 POGKQ9P215 609 aa11.92□□□□□ -0.5
COL28A1-201ENST00000399429 HSCBQ8IWL3 235 aa11.92□□□□□ -0.5
COL28A1-201ENST00000399429 NEUROD2Q15784 382 aa11.91□□□□□ -0.5
COL28A1-201ENST00000399429 CENPQQ7L2Z9 268 aaPredicted RBP11.91□□□□□ -0.5
COL28A1-201ENST00000399429 TPRNQ4KMQ1 711 aa11.9□□□□□ -0.5
COL28A1-201ENST00000399429 RBM10P98175 930 aaKnown RBP11.89□□□□□ -0.51
COL28A1-201ENST00000399429 MPHOSPH9Q99550 1183 aa11.89□□□□□ -0.51
COL28A1-201ENST00000399429 RGL3Q3MIN7 710 aa11.88□□□□□ -0.51
COL28A1-201ENST00000399429 CNTLNQ9NXG0 1405 aa11.88□□□□□ -0.51
COL28A1-201ENST00000399429 PDE3BQ13370 1112 aa11.88□□□□□ -0.51
COL28A1-201ENST00000399429 WASHC2CQ9Y4E1 1318 aa11.88□□□□□ -0.51
COL28A1-201ENST00000399429 KIF21BO75037 1637 aa11.88□□□□□ -0.51
COL28A1-201ENST00000399429 KIF27Q86VH2 1401 aa11.88□□□□□ -0.51
COL28A1-201ENST00000399429 CCDC7Q96M83 1385 aa11.87□□□□□ -0.51
COL28A1-201ENST00000399429 MFAP1P55081 439 aaKnown RBP11.86□□□□□ -0.51
COL28A1-201ENST00000399429 KIF7Q2M1P5 1343 aa11.86□□□□□ -0.51
COL28A1-201ENST00000399429 CDCA7LQ96GN5 454 aa11.86□□□□□ -0.51
COL28A1-201ENST00000399429 BAZ1AQ9NRL2 1556 aaPredicted RBP11.86□□□□□ -0.51
COL28A1-201ENST00000399429 PLCB2Q00722 1185 aa11.86□□□□□ -0.51
COL28A1-201ENST00000399429 FOXD4L1Q9NU39 408 aa11.86□□□□□ -0.51
COL28A1-201ENST00000399429 ARHGAP35Q9NRY4 1499 aa11.86□□□□□ -0.51
COL28A1-201ENST00000399429 RALBP1Q15311 655 aa11.85□□□□□ -0.51
COL28A1-201ENST00000399429 GBP4Q96PP9 640 aa11.85□□□□□ -0.51
COL28A1-201ENST00000399429 RRBP1Q9P2E9 1410 aaKnown RBP11.85□□□□□ -0.51
COL28A1-201ENST00000399429 SMG6Q86US8 1419 aaKnown RBP11.84□□□□□ -0.51
COL28A1-201ENST00000399429 NLRP13Q86W25 1043 aa11.84□□□□□ -0.51
COL28A1-201ENST00000399429 KNSTRNQ9Y448 316 aa11.84□□□□□ -0.51
COL28A1-201ENST00000399429 PLEKHG5O94827 1062 aa11.83□□□□□ -0.52
COL28A1-201ENST00000399429 FTSJ3Q8IY81 847 aaKnown RBP11.83□□□□□ -0.52
COL28A1-201ENST00000399429 MRE11P49959 708 aa11.83□□□□□ -0.52
COL28A1-201ENST00000399429 KTN1Q86UP2 1357 aaKnown RBP11.82□□□□□ -0.52
COL28A1-201ENST00000399429 ESPNB1AK53 854 aa11.81□□□□□ -0.52
COL28A1-201ENST00000399429 R3HCC1Q9Y3T6 440 aaKnown RBP11.81□□□□□ -0.52
COL28A1-201ENST00000399429 FHAD1B1AJZ9 1412 aa11.81□□□□□ -0.52
COL28A1-201ENST00000399429 FMN1Q68DA7 1419 aa11.81□□□□□ -0.52
COL28A1-201ENST00000399429 TRAK2O60296 914 aa11.81□□□□□ -0.52
COL28A1-201ENST00000399429 DCAF11Q8TEB1 546 aa11.81□□□□□ -0.52
COL28A1-201ENST00000399429 NACADO15069 1562 aa11.81□□□□□ -0.52
COL28A1-201ENST00000399429 MYBBP1AQ9BQG0 1328 aaKnown RBP11.8□□□□□ -0.52
COL28A1-201ENST00000399429 PHLDB1Q86UU1 1377 aa11.8□□□□□ -0.52
COL28A1-201ENST00000399429 DDX11L8A8MPP1 907 aa11.8□□□□□ -0.52
COL28A1-201ENST00000399429 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.8□□□□□ -0.52
COL28A1-201ENST00000399429 GOLGA2Q08379 1002 aa11.79□□□□□ -0.52
COL28A1-201ENST00000399429 KIAA1211Q6ZU35 1233 aa11.79□□□□□ -0.52
COL28A1-201ENST00000399429 TPM2P07951 284 aa11.79□□□□□ -0.52
COL28A1-201ENST00000399429 RRAGDQ9NQL2 400 aaPredicted RBP11.79□□□□□ -0.52
COL28A1-201ENST00000399429 CCDC18Q5T9S5 1454 aa11.78□□□□□ -0.52
COL28A1-201ENST00000399429 PNISRQ8TF01 805 aaKnown RBP11.78□□□□□ -0.52
COL28A1-201ENST00000399429 CLUAP1Q96AJ1 413 aa11.78□□□□□ -0.52
COL28A1-201ENST00000399429 CHMP5Q9NZZ3 219 aa11.77□□□□□ -0.52
COL28A1-201ENST00000399429 DDX49Q9Y6V7 483 aaKnown RBP11.77□□□□□ -0.53
COL28A1-201ENST00000399429 CCDC146Q8IYE0 955 aa11.76□□□□□ -0.53
COL28A1-201ENST00000399429 ST20-MTHFSA0A0A6YYL1 179 aa11.76□□□□□ -0.53
COL28A1-201ENST00000399429 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.76□□□□□ -0.53
COL28A1-201ENST00000399429 KIF15Q9NS87 1388 aa11.76□□□□□ -0.53
COL28A1-201ENST00000399429 CALD1Q05682 793 aaKnown RBP11.75□□□□□ -0.53
COL28A1-201ENST00000399429 COG6Q9Y2V7 657 aa11.75□□□□□ -0.53
COL28A1-201ENST00000399429 PANK2Q9BZ23 570 aa11.75□□□□□ -0.53
COL28A1-201ENST00000399429 GRPEL1Q9HAV7 217 aa11.75□□□□□ -0.53
COL28A1-201ENST00000399429 ARAP1Q96P48 1450 aa11.74□□□□□ -0.53
COL28A1-201ENST00000399429 MAPK8IP3Q9UPT6 1336 aa11.74□□□□□ -0.53
COL28A1-201ENST00000399429 CHAF1AQ13111 956 aaPredicted RBP11.74□□□□□ -0.53
COL28A1-201ENST00000399429 PDCL3Q9H2J4 239 aa11.74□□□□□ -0.53
COL28A1-201ENST00000399429 RWDD1Q9H446 243 aaPredicted RBP11.73□□□□□ -0.53
COL28A1-201ENST00000399429 KIAA2012Q0VF49 1180 aa11.73□□□□□ -0.53
COL28A1-201ENST00000399429 PRDM10Q9NQV6 1147 aa11.73□□□□□ -0.53
COL28A1-201ENST00000399429 PKD2Q13563 968 aa11.73□□□□□ -0.53
COL28A1-201ENST00000399429 CARMIL1Q5VZK9 1371 aa11.73□□□□□ -0.53
COL28A1-201ENST00000399429 TOP2AP11388 1531 aaKnown RBP11.72□□□□□ -0.53
COL28A1-201ENST00000399429 CLCN1P35523 988 aa11.72□□□□□ -0.53
COL28A1-201ENST00000399429 XRCC6P12956 609 aaKnown RBP eCLIP11.72□□□□□ -0.53
COL28A1-201ENST00000399429 MCM4P33991 863 aa11.72□□□□□ -0.53
COL28A1-201ENST00000399429 USP47Q96K76 1375 aa11.72□□□□□ -0.53
COL28A1-201ENST00000399429 NASPP49321 788 aaPredicted RBP11.72□□□□□ -0.53
COL28A1-201ENST00000399429 PMFBP1Q8TBY8 1022 aa11.72□□□□□ -0.53
COL28A1-201ENST00000399429 MAP7D2Q96T17 732 aa11.72□□□□□ -0.53
COL28A1-201ENST00000399429 C20orf194Q5TEA3 1177 aa11.71□□□□□ -0.53
COL28A1-201ENST00000399429 ZHX1Q9UKY1 873 aaPredicted RBP11.71□□□□□ -0.54
COL28A1-201ENST00000399429 UACAQ9BZF9 1416 aa11.71□□□□□ -0.54
COL28A1-201ENST00000399429 PTMSP20962 102 aa11.71□□□□□ -0.54
COL28A1-201ENST00000399429 NBPF8Q3BBV2 869 aa11.7□□□□□ -0.54
COL28A1-201ENST00000399429 BCL2L13Q9BXK5 485 aa11.7□□□□□ -0.54
COL28A1-201ENST00000399429 TSPY4P0CV99 314 aa11.7□□□□□ -0.54
COL28A1-201ENST00000399429 TSPY10P0CW01 314 aa11.7□□□□□ -0.54
COL28A1-201ENST00000399429 SKOR2Q2VWA4 1001 aaPredicted RBP11.69□□□□□ -0.54
COL28A1-201ENST00000399429 ROCK2O75116 1388 aaKnown RBP11.69□□□□□ -0.54
COL28A1-201ENST00000399429 MAPKBP1O60336 1514 aa11.68□□□□□ -0.54
COL28A1-201ENST00000399429 TMF1P82094 1093 aa11.68□□□□□ -0.54
COL28A1-201ENST00000399429 CENPJQ9HC77 1338 aaPredicted RBP11.67□□□□□ -0.54
COL28A1-201ENST00000399429 FOXD4L5Q5VV16 416 aaPredicted RBP11.67□□□□□ -0.54
COL28A1-201ENST00000399429 ZNF771Q7L3S4 317 aaPredicted RBP11.67□□□□□ -0.54
COL28A1-201ENST00000399429 FOXD4L4Q8WXT5 416 aaPredicted RBP11.67□□□□□ -0.54
COL28A1-201ENST00000399429 C22orf23Q9BZE7 217 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms