RNA–Protein interactions for RNA: ENST00000399256.4

APOB-202, Transcript of apolipoprotein B, humanhuman

TSL 1 (best) BASIC

Gene APOB, Length 3,128 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOB-202ENST00000399256 MYOM3Q5VTT5 1437 aa19.22■□□□□ 0.67
APOB-202ENST00000399256 CHD1O14646 1710 aa19.2■□□□□ 0.66
APOB-202ENST00000399256 MRS2Q9HD23 443 aa19.2■□□□□ 0.66
APOB-202ENST00000399256 C11orf95C9JLR9 678 aaPredicted RBP19.19■□□□□ 0.66
APOB-202ENST00000399256 UGGT2Q9NYU1 1516 aa19.18■□□□□ 0.66
APOB-202ENST00000399256 PRKRIP1Q9H875 184 aaPredicted RBP19.18■□□□□ 0.66
APOB-202ENST00000399256 LRRIQ1Q96JM4 1722 aa19.17■□□□□ 0.66
APOB-202ENST00000399256 DENND4BO75064 1496 aaPredicted RBP19.15■□□□□ 0.66
APOB-202ENST00000399256 DEKP35659 375 aaKnown RBP19.15■□□□□ 0.66
APOB-202ENST00000399256 ZBED9Q6R2W3 1325 aa19.15■□□□□ 0.66
APOB-202ENST00000399256 CCDC7Q96M83 1385 aa19.14■□□□□ 0.65
APOB-202ENST00000399256 FOXD1Q16676 465 aa19.13■□□□□ 0.65
APOB-202ENST00000399256 L3MBTL2Q969R5 705 aa19.13■□□□□ 0.65
APOB-202ENST00000399256 SUPT6HQ7KZ85 1726 aaKnown RBP19.13■□□□□ 0.65
APOB-202ENST00000399256 NCOA1Q15788 1441 aa19.11■□□□□ 0.65
APOB-202ENST00000399256 MYT1LQ9UL68 1186 aa19.11■□□□□ 0.65
APOB-202ENST00000399256 DISP1Q96F81 1524 aa19.1■□□□□ 0.65
APOB-202ENST00000399256 KDM6BO15054 1643 aa19.1■□□□□ 0.65
APOB-202ENST00000399256 KIAA0556O60303 1618 aa19.1■□□□□ 0.65
APOB-202ENST00000399256 HECW1Q76N89 1606 aa19.1■□□□□ 0.65
APOB-202ENST00000399256 NBR1Q14596 966 aa19.09■□□□□ 0.65
APOB-202ENST00000399256 NOP58Q9Y2X3 529 aaKnown RBP19.09■□□□□ 0.65
APOB-202ENST00000399256 EHBP1L1Q8N3D4 1523 aa19.09■□□□□ 0.65
APOB-202ENST00000399256 MPHOSPH9Q99550 1183 aa19.09■□□□□ 0.65
APOB-202ENST00000399256 PAK3O75914 559 aaPredicted RBP19.07■□□□□ 0.64
APOB-202ENST00000399256 CNGB1Q14028 1251 aaPredicted RBP19.07■□□□□ 0.64
APOB-202ENST00000399256 GCC2Q8IWJ2 1684 aa19.06■□□□□ 0.64
APOB-202ENST00000399256 MAGI3Q5TCQ9 1506 aa19.05■□□□□ 0.64
APOB-202ENST00000399256 NBPF8Q3BBV2 869 aa19.05■□□□□ 0.64
APOB-202ENST00000399256 AKNAQ7Z591 1439 aa19.03■□□□□ 0.64
APOB-202ENST00000399256 KIF7Q2M1P5 1343 aa19.03■□□□□ 0.64
APOB-202ENST00000399256 JPH4Q96JJ6 628 aa19.03■□□□□ 0.64
APOB-202ENST00000399256 ARHGEF11O15085 1522 aa19.01■□□□□ 0.63
APOB-202ENST00000399256 TCOF1Q13428 1488 aaKnown RBP19■□□□□ 0.63
APOB-202ENST00000399256 SENP3-EIF4A1A0A087X0R7 540 aa19■□□□□ 0.63
APOB-202ENST00000399256 SHROOM2Q13796 1616 aa18.98■□□□□ 0.63
APOB-202ENST00000399256 CCDC136Q96JN2 1154 aa18.97■□□□□ 0.63
APOB-202ENST00000399256 CLASP1Q7Z460 1538 aa18.97■□□□□ 0.63
APOB-202ENST00000399256 CARMIL2Q6F5E8 1435 aa18.97■□□□□ 0.63
APOB-202ENST00000399256 SMG6Q86US8 1419 aaKnown RBP18.97■□□□□ 0.63
APOB-202ENST00000399256 ARID3CA6NKF2 412 aa18.96■□□□□ 0.63
APOB-202ENST00000399256 POLR3GLQ9BT43 218 aa18.96■□□□□ 0.63
APOB-202ENST00000399256 NUDCQ9Y266 331 aa18.94■□□□□ 0.62
APOB-202ENST00000399256 ANKRD30BQ9BXX2 1392 aa18.94■□□□□ 0.62
APOB-202ENST00000399256 ANP32AP39687 249 aaKnown RBP18.94■□□□□ 0.62
APOB-202ENST00000399256 RPRD2Q5VT52 1461 aaKnown RBP18.94■□□□□ 0.62
APOB-202ENST00000399256 SPATA31E1Q6ZUB1 1445 aa18.94■□□□□ 0.62
APOB-202ENST00000399256 TEX14Q8IWB6 1497 aa18.94■□□□□ 0.62
APOB-202ENST00000399256 PRG4Q92954 1404 aaPredicted RBP18.93■□□□□ 0.62
APOB-202ENST00000399256 IPO9Q96P70 1041 aaKnown RBP18.91■□□□□ 0.62
APOB-202ENST00000399256 RAPGEF6Q8TEU7 1601 aa18.89■□□□□ 0.61
APOB-202ENST00000399256 SLC4A1APQ9BWU0 796 aaKnown RBP18.89■□□□□ 0.61
APOB-202ENST00000399256 CDK13Q14004 1512 aaKnown RBP18.88■□□□□ 0.61
APOB-202ENST00000399256 DHX29Q7Z478 1369 aaKnown RBP18.88■□□□□ 0.61
APOB-202ENST00000399256 POLR1AO95602 1720 aaPredicted RBP18.88■□□□□ 0.61
APOB-202ENST00000399256 RNF123Q5XPI4 1314 aa18.88■□□□□ 0.61
APOB-202ENST00000399256 ZBTB47Q9UFB7 747 aaPredicted RBP18.87■□□□□ 0.61
APOB-202ENST00000399256 MIA2Q96PC5 1412 aa18.87■□□□□ 0.61
APOB-202ENST00000399256 EPRSP07814 1512 aaKnown RBP18.87■□□□□ 0.61
APOB-202ENST00000399256 ZNF326Q5BKZ1 582 aaKnown RBP18.86■□□□□ 0.61
APOB-202ENST00000399256 RTL5Q5HYW3 569 aaPredicted RBP18.86■□□□□ 0.61
APOB-202ENST00000399256 ERCC6L2Q5T890 1561 aa18.86■□□□□ 0.61
APOB-202ENST00000399256 NUP153P49790 1475 aaKnown RBP18.84■□□□□ 0.61
APOB-202ENST00000399256 PLB1Q6P1J6 1458 aa18.84■□□□□ 0.61
APOB-202ENST00000399256 DAPK1P53355 1430 aa18.83■□□□□ 0.6
APOB-202ENST00000399256 ABCA8O94911 1581 aa18.82■□□□□ 0.6
APOB-202ENST00000399256 ZNF644Q9H582 1327 aaPredicted RBP18.81■□□□□ 0.6
APOB-202ENST00000399256 USP47Q96K76 1375 aa18.8■□□□□ 0.6
APOB-202ENST00000399256 NPM2Q86SE8 214 aaKnown RBP18.8■□□□□ 0.6
APOB-202ENST00000399256 BCORL1Q5H9F3 1711 aa18.8■□□□□ 0.6
APOB-202ENST00000399256 PTPRGP23470 1445 aa18.79■□□□□ 0.6
APOB-202ENST00000399256 ROCK1Q13464 1354 aa18.79■□□□□ 0.6
APOB-202ENST00000399256 ABCC5O15440 1437 aa18.79■□□□□ 0.6
APOB-202ENST00000399256 TMC1Q8TDI8 760 aa18.79■□□□□ 0.6
APOB-202ENST00000399256 PNISRQ8TF01 805 aaKnown RBP18.79■□□□□ 0.6
APOB-202ENST00000399256 OSCARQ8IYS5 282 aa18.76■□□□□ 0.59
APOB-202ENST00000399256 DNMT1P26358 1616 aaKnown RBP18.74■□□□□ 0.59
APOB-202ENST00000399256 PZPP20742 1482 aa18.73■□□□□ 0.59
APOB-202ENST00000399256 EXOC6Q8TAG9 804 aa18.73■□□□□ 0.59
APOB-202ENST00000399256 MBD5Q9P267 1494 aa18.72■□□□□ 0.59
APOB-202ENST00000399256 RRP1P56182 461 aaKnown RBP18.71■□□□□ 0.59
APOB-202ENST00000399256 SALL2Q9Y467 1007 aaPredicted RBP18.7■□□□□ 0.58
APOB-202ENST00000399256 LAS1LQ9Y4W2 734 aaKnown RBP18.7■□□□□ 0.58
APOB-202ENST00000399256 KDM5CP41229 1560 aa18.69■□□□□ 0.58
APOB-202ENST00000399256 ATP10BO94823 1461 aa18.68■□□□□ 0.58
APOB-202ENST00000399256 PKD2Q13563 968 aa18.67■□□□□ 0.58
APOB-202ENST00000399256 IL27Q8NEV9 243 aa18.67■□□□□ 0.58
APOB-202ENST00000399256 KIF14Q15058 1648 aa18.67■□□□□ 0.58
APOB-202ENST00000399256 ABCC2Q92887 1545 aa18.66■□□□□ 0.58
APOB-202ENST00000399256 KIAA1107Q9UPP5 1409 aa18.66■□□□□ 0.58
APOB-202ENST00000399256 ARID4BQ4LE39 1312 aaPredicted RBP18.66■□□□□ 0.58
APOB-202ENST00000399256 PDE4AP27815 886 aa18.66■□□□□ 0.58
APOB-202ENST00000399256 ANO8Q9HCE9 1232 aaPredicted RBP18.66■□□□□ 0.58
APOB-202ENST00000399256 KIF15Q9NS87 1388 aa18.66■□□□□ 0.58
APOB-202ENST00000399256 TCERG1O14776 1098 aaKnown RBP18.65■□□□□ 0.58
APOB-202ENST00000399256 LRPPRCP42704 1394 aaKnown RBP18.65■□□□□ 0.58
APOB-202ENST00000399256 RCAN3Q9UKA8 241 aa18.65■□□□□ 0.58
APOB-202ENST00000399256 CARD11Q9BXL7 1154 aa18.65■□□□□ 0.58
APOB-202ENST00000399256 ROCK2O75116 1388 aaKnown RBP18.64■□□□□ 0.58
APOB-202ENST00000399256 NEFMP07197 916 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms