RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 MLECQ14165 292 aa21.76■■□□□ 1.07
VCX3A-202ENST00000398729 CFAP74Q9C0B2 1584 aa21.76■■□□□ 1.07
VCX3A-202ENST00000398729 CLIP1P30622 1438 aa21.74■■□□□ 1.07
VCX3A-202ENST00000398729 POGZQ7Z3K3 1410 aa21.73■■□□□ 1.07
VCX3A-202ENST00000398729 CASKIN1Q8WXD9 1431 aa21.73■■□□□ 1.07
VCX3A-202ENST00000398729 ZMYM4Q5VZL5 1548 aa21.73■■□□□ 1.07
VCX3A-202ENST00000398729 LRRIQ1Q96JM4 1722 aa21.72■■□□□ 1.07
VCX3A-202ENST00000398729 MAGI2Q86UL8 1455 aa21.71■■□□□ 1.07
VCX3A-202ENST00000398729 CERKQ8TCT0 537 aa21.71■■□□□ 1.07
VCX3A-202ENST00000398729 PLCH2O75038 1416 aa21.71■■□□□ 1.07
VCX3A-202ENST00000398729 TROQ12816 1431 aaPredicted RBP21.71■■□□□ 1.07
VCX3A-202ENST00000398729 SCAPERQ9BY12 1400 aa21.71■■□□□ 1.07
VCX3A-202ENST00000398729 ZFYVE16Q7Z3T8 1539 aa21.7■■□□□ 1.07
VCX3A-202ENST00000398729 KIF14Q15058 1648 aa21.7■■□□□ 1.06
VCX3A-202ENST00000398729 CCDC18Q5T9S5 1454 aa21.7■■□□□ 1.06
VCX3A-202ENST00000398729 MYO5CQ9NQX4 1742 aa21.67■■□□□ 1.06
VCX3A-202ENST00000398729 FYCO1Q9BQS8 1478 aa21.66■■□□□ 1.06
VCX3A-202ENST00000398729 CEBPAP49715 358 aaPredicted RBP21.66■■□□□ 1.06
VCX3A-202ENST00000398729 ATP10AO60312 1499 aa21.64■■□□□ 1.06
VCX3A-202ENST00000398729 EFCAB2Q5VUJ9 269 aa21.64■■□□□ 1.05
VCX3A-202ENST00000398729 ARHGEF12Q9NZN5 1544 aa21.6■■□□□ 1.05
VCX3A-202ENST00000398729 AFAP1Q8N556 730 aa21.6■■□□□ 1.05
VCX3A-202ENST00000398729 FER1L4A9Z1Z3 1794 aa21.59■■□□□ 1.05
VCX3A-202ENST00000398729 ARHGAP5Q13017 1502 aa21.58■■□□□ 1.04
VCX3A-202ENST00000398729 C9orf84Q5VXU9 1444 aa21.56■■□□□ 1.04
VCX3A-202ENST00000398729 CEP162Q5TB80 1403 aa21.55■■□□□ 1.04
VCX3A-202ENST00000398729 CDC42BPBQ9Y5S2 1711 aa21.52■■□□□ 1.04
VCX3A-202ENST00000398729 PREX2Q70Z35 1606 aa21.51■■□□□ 1.03
VCX3A-202ENST00000398729 DMRT2Q9Y5R5 561 aa21.5■■□□□ 1.03
VCX3A-202ENST00000398729 SETD1BQ9UPS6 1966 aaKnown RBP21.49■■□□□ 1.03
VCX3A-202ENST00000398729 ZNF518AQ6AHZ1 1483 aa21.49■■□□□ 1.03
VCX3A-202ENST00000398729 STRCQ7RTU9 1775 aa21.48■■□□□ 1.03
VCX3A-202ENST00000398729 PREX1Q8TCU6 1659 aa21.48■■□□□ 1.03
VCX3A-202ENST00000398729 CDC42BPAQ5VT25 1732 aa21.47■■□□□ 1.03
VCX3A-202ENST00000398729 ILDR2Q71H61 639 aa21.46■■□□□ 1.03
VCX3A-202ENST00000398729 KDM5CP41229 1560 aa21.45■■□□□ 1.02
VCX3A-202ENST00000398729 MYT1LQ9UL68 1186 aa21.45■■□□□ 1.02
VCX3A-202ENST00000398729 MTUS2Q5JR59 1369 aa21.45■■□□□ 1.02
VCX3A-202ENST00000398729 LOC105371045A0A1W2PR82 267 aa21.44■■□□□ 1.02
VCX3A-202ENST00000398729 UHRF1BP1Q6BDS2 1440 aa21.43■■□□□ 1.02
VCX3A-202ENST00000398729 ABCC1P33527 1531 aa21.43■■□□□ 1.02
VCX3A-202ENST00000398729 DIP2CQ9Y2E4 1556 aa21.41■■□□□ 1.02
VCX3A-202ENST00000398729 MLH3Q9UHC1 1453 aa21.41■■□□□ 1.02
VCX3A-202ENST00000398729 TRAPPC8Q9Y2L5 1435 aa21.41■■□□□ 1.02
VCX3A-202ENST00000398729 GPATCH8Q9UKJ3 1502 aaKnown RBP21.4■■□□□ 1.02
VCX3A-202ENST00000398729 ITSN2Q9NZM3 1697 aa21.4■■□□□ 1.02
VCX3A-202ENST00000398729 CCNB3Q8WWL7 1395 aa21.38■■□□□ 1.01
VCX3A-202ENST00000398729 DISP3Q9P2K9 1392 aa21.38■■□□□ 1.01
VCX3A-202ENST00000398729 ZNF777Q9ULD5 760 aaPredicted RBP21.38■■□□□ 1.01
VCX3A-202ENST00000398729 EHBP1L1Q8N3D4 1523 aa21.38■■□□□ 1.01
VCX3A-202ENST00000398729 PTPRTO14522 1441 aa21.38■■□□□ 1.01
VCX3A-202ENST00000398729 REREQ9P2R6 1566 aa21.37■■□□□ 1.01
VCX3A-202ENST00000398729 ABCA6Q8N139 1617 aa21.36■■□□□ 1.01
VCX3A-202ENST00000398729 SAMD9LQ8IVG5 1584 aa21.36■■□□□ 1.01
VCX3A-202ENST00000398729 CFDP1Q9UEE9 299 aaPredicted RBP21.35■■□□□ 1.01
VCX3A-202ENST00000398729 AGLP35573 1532 aa21.34■■□□□ 1.01
VCX3A-202ENST00000398729 C3P01024 1663 aa21.34■■□□□ 1.01
VCX3A-202ENST00000398729 ESF1Q9H501 851 aaKnown RBP21.33■■□□□ 1.01
VCX3A-202ENST00000398729 VPS8Q8N3P4 1428 aa21.32■■□□□ 1
VCX3A-202ENST00000398729 SOCS7O14512 581 aa21.32■■□□□ 1
VCX3A-202ENST00000398729 SYCP2Q9BX26 1530 aa21.32■■□□□ 1
VCX3A-202ENST00000398729 PLEKHH2Q8IVE3 1493 aa21.32■■□□□ 1
VCX3A-202ENST00000398729 KIAA1107Q9UPP5 1409 aa21.3■■□□□ 1
VCX3A-202ENST00000398729 LTBP4Q8N2S1 1624 aa21.3■■□□□ 1
VCX3A-202ENST00000398729 TIAM1Q13009 1591 aa21.29■■□□□ 1
VCX3A-202ENST00000398729 HNRNPMP52272 730 aaKnown RBP eCLIP21.29■■□□□ 1
VCX3A-202ENST00000398729 KIDINS220Q9ULH0 1771 aa21.28■■□□□ 1
VCX3A-202ENST00000398729 NCOA1Q15788 1441 aa21.27■■□□□ 1
VCX3A-202ENST00000398729 SUPT6HQ7KZ85 1726 aaKnown RBP21.26■□□□□ 0.99
VCX3A-202ENST00000398729 SPAG9O60271 1321 aaKnown RBP21.26■□□□□ 0.99
VCX3A-202ENST00000398729 ZMYM3Q14202 1370 aa21.25■□□□□ 0.99
VCX3A-202ENST00000398729 CNTLNQ9NXG0 1405 aa21.25■□□□□ 0.99
VCX3A-202ENST00000398729 NCOA2Q15596 1464 aa21.24■□□□□ 0.99
VCX3A-202ENST00000398729 NCKAP5LQ9HCH0 1330 aa21.23■□□□□ 0.99
VCX3A-202ENST00000398729 ATP7AQ04656 1500 aa21.21■□□□□ 0.99
VCX3A-202ENST00000398729 ZNF644Q9H582 1327 aaPredicted RBP21.21■□□□□ 0.99
VCX3A-202ENST00000398729 NPATQ14207 1427 aa21.21■□□□□ 0.99
VCX3A-202ENST00000398729 LRRC9Q6ZRR7 1453 aa21.2■□□□□ 0.98
VCX3A-202ENST00000398729 MAP3K1Q13233 1512 aa21.19■□□□□ 0.98
VCX3A-202ENST00000398729 INO80Q9ULG1 1556 aaPredicted RBP21.19■□□□□ 0.98
VCX3A-202ENST00000398729 CAMSAP1Q5T5Y3 1602 aa21.18■□□□□ 0.98
VCX3A-202ENST00000398729 IQSEC2Q5JU85 1478 aa21.18■□□□□ 0.98
VCX3A-202ENST00000398729 ZNF335Q9H4Z2 1342 aaPredicted RBP21.17■□□□□ 0.98
VCX3A-202ENST00000398729 MBD5Q9P267 1494 aa21.17■□□□□ 0.98
VCX3A-202ENST00000398729 GGT6Q6P531 493 aa21.13■□□□□ 0.97
VCX3A-202ENST00000398729 A2MP01023 1474 aa21.13■□□□□ 0.97
VCX3A-202ENST00000398729 CAMSAP2Q08AD1 1489 aa21.13■□□□□ 0.97
VCX3A-202ENST00000398729 MROH2AA6NES4 1674 aa21.12■□□□□ 0.97
VCX3A-202ENST00000398729 SPATA31D1Q6ZQQ2 1576 aa21.12■□□□□ 0.97
VCX3A-202ENST00000398729 KANK4Q5T7N3 995 aaPredicted RBP21.12■□□□□ 0.97
VCX3A-202ENST00000398729 PTPRKQ15262 1439 aa21.12■□□□□ 0.97
VCX3A-202ENST00000398729 PLXNC1O60486 1568 aa21.11■□□□□ 0.97
VCX3A-202ENST00000398729 APLP2Q06481 763 aa21.11■□□□□ 0.97
VCX3A-202ENST00000398729 PKD2Q13563 968 aa21.11■□□□□ 0.97
VCX3A-202ENST00000398729 RSPH4AQ5TD94 716 aa21.11■□□□□ 0.97
VCX3A-202ENST00000398729 ADGBQ8N7X0 1667 aa21.11■□□□□ 0.97
VCX3A-202ENST00000398729 RTEL1-TNFRSF6BF6WH68 1400 aa21.11■□□□□ 0.97
VCX3A-202ENST00000398729 CCDC141Q6ZP82 1450 aa21.1■□□□□ 0.97
VCX3A-202ENST00000398729 UBAP1LF5GYI3 381 aa21.1■□□□□ 0.97
VCX3A-202ENST00000398729 PPP6R1Q9UPN7 881 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms