RNA–Protein interactions for RNA: ENST00000398640.6

PCDHA11-201, Transcript of protocadherin alpha 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHA11, Length 6,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11-201ENST00000398640 CFAP53Q96M91 514 aa18.68■□□□□ 0.58
PCDHA11-201ENST00000398640 BICRAQ9NZM4 1560 aa18.67■□□□□ 0.58
PCDHA11-201ENST00000398640 NEUROD2Q15784 382 aa18.66■□□□□ 0.58
PCDHA11-201ENST00000398640 STK26Q9P289 416 aa18.65■□□□□ 0.58
PCDHA11-201ENST00000398640 DCAF11Q8TEB1 546 aa18.65■□□□□ 0.58
PCDHA11-201ENST00000398640 KNSTRNQ9Y448 316 aa18.64■□□□□ 0.57
PCDHA11-201ENST00000398640 SRPK2P78362 688 aaKnown RBP18.63■□□□□ 0.57
PCDHA11-201ENST00000398640 LAMC3Q9Y6N6 1575 aa18.63■□□□□ 0.57
PCDHA11-201ENST00000398640 SAFB2Q14151 953 aaKnown RBP eCLIP18.62■□□□□ 0.57
PCDHA11-201ENST00000398640 PKD2Q13563 968 aa18.62■□□□□ 0.57
PCDHA11-201ENST00000398640 IGF1RP08069 1367 aa18.62■□□□□ 0.57
PCDHA11-201ENST00000398640 PRG4Q92954 1404 aaPredicted RBP18.62■□□□□ 0.57
PCDHA11-201ENST00000398640 NUP155O75694 1391 aa18.61■□□□□ 0.57
PCDHA11-201ENST00000398640 TOPBP1Q92547 1522 aa18.6■□□□□ 0.57
PCDHA11-201ENST00000398640 PRDM2Q13029 1718 aa18.6■□□□□ 0.57
PCDHA11-201ENST00000398640 SNAPC4Q5SXM2 1469 aa18.59■□□□□ 0.57
PCDHA11-201ENST00000398640 KANK4Q5T7N3 995 aaPredicted RBP18.59■□□□□ 0.57
PCDHA11-201ENST00000398640 MAPK8IP3Q9UPT6 1336 aa18.58■□□□□ 0.57
PCDHA11-201ENST00000398640 NCLP19338 710 aaKnown RBP18.57■□□□□ 0.56
PCDHA11-201ENST00000398640 PAK3O75914 559 aaPredicted RBP18.55■□□□□ 0.56
PCDHA11-201ENST00000398640 FTSJ3Q8IY81 847 aaKnown RBP18.54■□□□□ 0.56
PCDHA11-201ENST00000398640 U2SURPO15042 1029 aaKnown RBP18.53■□□□□ 0.56
PCDHA11-201ENST00000398640 GOLGA2Q08379 1002 aa18.53■□□□□ 0.56
PCDHA11-201ENST00000398640 CCDC9Q9Y3X0 531 aaKnown RBP18.53■□□□□ 0.56
PCDHA11-201ENST00000398640 DNMBPQ6XZF7 1577 aa18.52■□□□□ 0.56
PCDHA11-201ENST00000398640 TMF1P82094 1093 aa18.51■□□□□ 0.55
PCDHA11-201ENST00000398640 BECN1Q14457 450 aa18.51■□□□□ 0.55
PCDHA11-201ENST00000398640 RUSC2Q8N2Y8 1516 aa18.51■□□□□ 0.55
PCDHA11-201ENST00000398640 NUDCQ9Y266 331 aa18.51■□□□□ 0.55
PCDHA11-201ENST00000398640 OS9Q13438 667 aaPredicted RBP18.51■□□□□ 0.55
PCDHA11-201ENST00000398640 SETD5Q9C0A6 1442 aa18.5■□□□□ 0.55
PCDHA11-201ENST00000398640 NUTM2DQ5VT03 806 aaPredicted RBP18.49■□□□□ 0.55
PCDHA11-201ENST00000398640 CC2D1BQ5T0F9 858 aaKnown RBP18.49■□□□□ 0.55
PCDHA11-201ENST00000398640 POLA1P09884 1462 aaPredicted RBP18.48■□□□□ 0.55
PCDHA11-201ENST00000398640 HDGFL2Q7Z4V5 671 aaPredicted RBP18.48■□□□□ 0.55
PCDHA11-201ENST00000398640 SIN3AQ96ST3 1273 aa18.48■□□□□ 0.55
PCDHA11-201ENST00000398640 CASC1Q6TDU7 716 aa18.47■□□□□ 0.55
PCDHA11-201ENST00000398640 CSB-PGBD3P0DP91 1061 aa18.47■□□□□ 0.55
PCDHA11-201ENST00000398640 SYNJ2O15056 1496 aa18.46■□□□□ 0.55
PCDHA11-201ENST00000398640 ZRSR1Q15695 479 aaKnown RBP18.46■□□□□ 0.55
PCDHA11-201ENST00000398640 SUPT16HQ9Y5B9 1047 aaKnown RBP18.45■□□□□ 0.54
PCDHA11-201ENST00000398640 FRAT1Q92837 279 aaPredicted RBP18.45■□□□□ 0.54
PCDHA11-201ENST00000398640 FOXD1Q16676 465 aa18.44■□□□□ 0.54
PCDHA11-201ENST00000398640 DDRGK1Q96HY6 314 aa18.44■□□□□ 0.54
PCDHA11-201ENST00000398640 GOLGA6L22H0YM25 854 aa18.43■□□□□ 0.54
PCDHA11-201ENST00000398640 TRIM44Q96DX7 344 aaPredicted RBP18.43■□□□□ 0.54
PCDHA11-201ENST00000398640 ISY1Q9ULR0 285 aaKnown RBP18.43■□□□□ 0.54
PCDHA11-201ENST00000398640 NAP1L2Q9ULW6 460 aaPredicted RBP18.43■□□□□ 0.54
PCDHA11-201ENST00000398640 GLIPR1L2Q4G1C9 344 aa18.43■□□□□ 0.54
PCDHA11-201ENST00000398640 MPHOSPH9Q99550 1183 aa18.43■□□□□ 0.54
PCDHA11-201ENST00000398640 NCBP3Q53F19 620 aaKnown RBP18.42■□□□□ 0.54
PCDHA11-201ENST00000398640 ZNF330Q9Y3S2 320 aaPredicted RBP18.42■□□□□ 0.54
PCDHA11-201ENST00000398640 UNC13AQ9UPW8 1703 aa18.4■□□□□ 0.54
PCDHA11-201ENST00000398640 PTMAP06454 111 aaKnown RBP18.39■□□□□ 0.53
PCDHA11-201ENST00000398640 NGDNQ8NEJ9 315 aaKnown RBP18.38■□□□□ 0.53
PCDHA11-201ENST00000398640 PNNQ9H307 717 aaKnown RBP18.38■□□□□ 0.53
PCDHA11-201ENST00000398640 ARHGAP5Q13017 1502 aa18.38■□□□□ 0.53
PCDHA11-201ENST00000398640 EIF3AQ14152 1382 aaKnown RBP18.38■□□□□ 0.53
PCDHA11-201ENST00000398640 RGS3P49796 1198 aa18.37■□□□□ 0.53
PCDHA11-201ENST00000398640 CUX1P39880 1505 aa18.37■□□□□ 0.53
PCDHA11-201ENST00000398640 MEX3CQ5U5Q3 659 aaKnown RBP18.37■□□□□ 0.53
PCDHA11-201ENST00000398640 FGD1P98174 961 aa18.36■□□□□ 0.53
PCDHA11-201ENST00000398640 CLSTN1O94985 981 aa18.36■□□□□ 0.53
PCDHA11-201ENST00000398640 ROCK2O75116 1388 aaKnown RBP18.35■□□□□ 0.53
PCDHA11-201ENST00000398640 MORC1Q86VD1 984 aa18.33■□□□□ 0.53
PCDHA11-201ENST00000398640 UACAQ9BZF9 1416 aa18.33■□□□□ 0.53
PCDHA11-201ENST00000398640 KCNJ4P48050 445 aa18.32■□□□□ 0.52
PCDHA11-201ENST00000398640 PLCB2Q00722 1185 aa18.32■□□□□ 0.52
PCDHA11-201ENST00000398640 SYNJ1O43426 1573 aa18.32■□□□□ 0.52
PCDHA11-201ENST00000398640 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.32■□□□□ 0.52
PCDHA11-201ENST00000398640 TOP2BQ02880 1626 aa18.31■□□□□ 0.52
PCDHA11-201ENST00000398640 VGFO15240 615 aaPredicted RBP18.31■□□□□ 0.52
PCDHA11-201ENST00000398640 DNTTIP2Q5QJE6 756 aaKnown RBP18.3■□□□□ 0.52
PCDHA11-201ENST00000398640 NUTM2FA1L443 756 aa18.29■□□□□ 0.52
PCDHA11-201ENST00000398640 RTF1Q92541 710 aaKnown RBP18.29■□□□□ 0.52
PCDHA11-201ENST00000398640 POGZQ7Z3K3 1410 aa18.27■□□□□ 0.52
PCDHA11-201ENST00000398640 MAGI1Q96QZ7 1491 aaPredicted RBP18.27■□□□□ 0.51
PCDHA11-201ENST00000398640 CCDC144AA2RUR9 1427 aa18.26■□□□□ 0.51
PCDHA11-201ENST00000398640 MYOM3Q5VTT5 1437 aa18.26■□□□□ 0.51
PCDHA11-201ENST00000398640 RAB3GAP2Q9H2M9 1393 aa18.26■□□□□ 0.51
PCDHA11-201ENST00000398640 TERF2IPQ9NYB0 399 aa18.25■□□□□ 0.51
PCDHA11-201ENST00000398640 TMX4Q9H1E5 349 aaPredicted RBP18.24■□□□□ 0.51
PCDHA11-201ENST00000398640 ANP32EQ9BTT0 268 aa18.24■□□□□ 0.51
PCDHA11-201ENST00000398640 HSP90AB1P08238 724 aaKnown RBP18.24■□□□□ 0.51
PCDHA11-201ENST00000398640 ATF3P18847 181 aa18.23■□□□□ 0.51
PCDHA11-201ENST00000398640 TIMELESSQ9UNS1 1208 aa18.23■□□□□ 0.51
PCDHA11-201ENST00000398640 RTN4Q9NQC3 1192 aaKnown RBP18.22■□□□□ 0.51
PCDHA11-201ENST00000398640 TRAK1Q9UPV9 953 aa18.22■□□□□ 0.51
PCDHA11-201ENST00000398640 ABCA10Q8WWZ4 1543 aa18.21■□□□□ 0.51
PCDHA11-201ENST00000398640 KIAA0586Q9BVV6 1533 aa18.21■□□□□ 0.51
PCDHA11-201ENST00000398640 SPRYD3Q8NCJ5 442 aa18.21■□□□□ 0.51
PCDHA11-201ENST00000398640 AFAP1Q8N556 730 aa18.2■□□□□ 0.5
PCDHA11-201ENST00000398640 EVA1CP58658 441 aa18.2■□□□□ 0.5
PCDHA11-201ENST00000398640 B4GALNT3Q6L9W6 998 aa18.2■□□□□ 0.5
PCDHA11-201ENST00000398640 CASKIN1Q8WXD9 1431 aa18.2■□□□□ 0.5
PCDHA11-201ENST00000398640 URB2Q14146 1524 aaKnown RBP18.19■□□□□ 0.5
PCDHA11-201ENST00000398640 APBB1O00213 710 aa18.19■□□□□ 0.5
PCDHA11-201ENST00000398640 KIF15Q9NS87 1388 aa18.18■□□□□ 0.5
PCDHA11-201ENST00000398640 ERICH3Q5RHP9 1530 aa18.18■□□□□ 0.5
PCDHA11-201ENST00000398640 EFCAB5A4FU69 1503 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms