RNA–Protein interactions for RNA: ENST00000396033.6

ITGB1-202, Transcript of integrin subunit beta 1, humanhuman

APPRIS P2 TSL 5 BASIC

Gene ITGB1, Length 3,784 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-202ENST00000396033 CAMSAP2Q08AD1 1489 aa17.64■□□□□ 0.41
ITGB1-202ENST00000396033 CLASP1Q7Z460 1538 aa17.64■□□□□ 0.41
ITGB1-202ENST00000396033 NEUROD1Q13562 356 aa17.63■□□□□ 0.41
ITGB1-202ENST00000396033 ABCC5O15440 1437 aa17.63■□□□□ 0.41
ITGB1-202ENST00000396033 ROCK1Q13464 1354 aa17.6■□□□□ 0.41
ITGB1-202ENST00000396033 ABCC10Q5T3U5 1492 aa17.6■□□□□ 0.41
ITGB1-202ENST00000396033 KDM6BO15054 1643 aa17.6■□□□□ 0.41
ITGB1-202ENST00000396033 ZNF777Q9ULD5 760 aaPredicted RBP17.59■□□□□ 0.41
ITGB1-202ENST00000396033 CDC42BPAQ5VT25 1732 aa17.59■□□□□ 0.41
ITGB1-202ENST00000396033 ABCC2Q92887 1545 aa17.57■□□□□ 0.4
ITGB1-202ENST00000396033 TRIM52Q96A61 297 aa17.56■□□□□ 0.4
ITGB1-202ENST00000396033 TIMELESSQ9UNS1 1208 aa17.56■□□□□ 0.4
ITGB1-202ENST00000396033 CROCC2H7BZ55 1655 aa17.54■□□□□ 0.4
ITGB1-202ENST00000396033 ADGBQ8N7X0 1667 aa17.53■□□□□ 0.4
ITGB1-202ENST00000396033 ACIN1Q9UKV3 1341 aaKnown RBP17.53■□□□□ 0.4
ITGB1-202ENST00000396033 TONSLQ96HA7 1378 aa17.5■□□□□ 0.39
ITGB1-202ENST00000396033 ADGRL2O95490 1459 aa17.49■□□□□ 0.39
ITGB1-202ENST00000396033 DENND4BO75064 1496 aaPredicted RBP17.48■□□□□ 0.39
ITGB1-202ENST00000396033 NCOA1Q15788 1441 aa17.48■□□□□ 0.39
ITGB1-202ENST00000396033 PREX2Q70Z35 1606 aa17.48■□□□□ 0.39
ITGB1-202ENST00000396033 MPHOSPH9Q99550 1183 aa17.47■□□□□ 0.39
ITGB1-202ENST00000396033 UHRF1BP1LA0JNW5 1464 aa17.46■□□□□ 0.39
ITGB1-202ENST00000396033 ANKRD30AQ9BXX3 1397 aa17.46■□□□□ 0.39
ITGB1-202ENST00000396033 SHANK2Q9UPX8 1470 aa17.46■□□□□ 0.39
ITGB1-202ENST00000396033 TTC37Q6PGP7 1564 aa17.45■□□□□ 0.38
ITGB1-202ENST00000396033 ZCCHC11Q5TAX3 1644 aaKnown RBP17.45■□□□□ 0.38
ITGB1-202ENST00000396033 PPP1R15AO75807 674 aaPredicted RBP17.45■□□□□ 0.38
ITGB1-202ENST00000396033 CDC42BPBQ9Y5S2 1711 aa17.45■□□□□ 0.38
ITGB1-202ENST00000396033 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.44■□□□□ 0.383e-9■■□□□ 13.8
ITGB1-202ENST00000396033 C9orf84Q5VXU9 1444 aa17.44■□□□□ 0.38
ITGB1-202ENST00000396033 SAMD9LQ8IVG5 1584 aa17.43■□□□□ 0.38
ITGB1-202ENST00000396033 ARHGEF5Q12774 1597 aa17.43■□□□□ 0.38
ITGB1-202ENST00000396033 KDM5BQ9UGL1 1544 aa17.42■□□□□ 0.38
ITGB1-202ENST00000396033 ARHGAP5Q13017 1502 aa17.41■□□□□ 0.38
ITGB1-202ENST00000396033 GTF3C3Q9Y5Q9 886 aa17.41■□□□□ 0.38
ITGB1-202ENST00000396033 HNRNPMP52272 730 aaKnown RBP eCLIP17.41■□□□□ 0.381e-6■■■□□ 18
ITGB1-202ENST00000396033 MIER1Q8N108 512 aa17.41■□□□□ 0.38
ITGB1-202ENST00000396033 TSPY4P0CV99 314 aa17.4■□□□□ 0.38
ITGB1-202ENST00000396033 TSPY10P0CW01 314 aa17.4■□□□□ 0.38
ITGB1-202ENST00000396033 MBD5Q9P267 1494 aa17.4■□□□□ 0.38
ITGB1-202ENST00000396033 MYO5CQ9NQX4 1742 aa17.39■□□□□ 0.38
ITGB1-202ENST00000396033 KCNH8Q96L42 1107 aa17.39■□□□□ 0.38
ITGB1-202ENST00000396033 FOXD1Q16676 465 aa17.39■□□□□ 0.37
ITGB1-202ENST00000396033 CCDC141Q6ZP82 1450 aa17.39■□□□□ 0.37
ITGB1-202ENST00000396033 SLC4A1APQ9BWU0 796 aaKnown RBP17.39■□□□□ 0.37
ITGB1-202ENST00000396033 ANKRD50Q9ULJ7 1429 aa17.39■□□□□ 0.37
ITGB1-202ENST00000396033 SYCP2Q9BX26 1530 aa17.37■□□□□ 0.37
ITGB1-202ENST00000396033 PZPP20742 1482 aa17.37■□□□□ 0.37
ITGB1-202ENST00000396033 ANKRD30BQ9BXX2 1392 aa17.35■□□□□ 0.37
ITGB1-202ENST00000396033 KIF15Q9NS87 1388 aa17.34■□□□□ 0.37
ITGB1-202ENST00000396033 RSPH4AQ5TD94 716 aa17.34■□□□□ 0.37
ITGB1-202ENST00000396033 PLEKHH2Q8IVE3 1493 aa17.32■□□□□ 0.36
ITGB1-202ENST00000396033 OSCARQ8IYS5 282 aa17.32■□□□□ 0.36
ITGB1-202ENST00000396033 PLCH2O75038 1416 aa17.31■□□□□ 0.36
ITGB1-202ENST00000396033 RPRD2Q5VT52 1461 aaKnown RBP17.3■□□□□ 0.36
ITGB1-202ENST00000396033 KIAA1107Q9UPP5 1409 aa17.3■□□□□ 0.36
ITGB1-202ENST00000396033 MAST1Q9Y2H9 1570 aa17.29■□□□□ 0.36
ITGB1-202ENST00000396033 WDR7Q9Y4E6 1490 aa17.28■□□□□ 0.36
ITGB1-202ENST00000396033 NUP155O75694 1391 aa17.28■□□□□ 0.36
ITGB1-202ENST00000396033 EFCAB2Q5VUJ9 269 aa17.27■□□□□ 0.35
ITGB1-202ENST00000396033 PKD2Q13563 968 aa17.26■□□□□ 0.35
ITGB1-202ENST00000396033 L3MBTL2Q969R5 705 aa17.26■□□□□ 0.35
ITGB1-202ENST00000396033 HIRIP3Q9BW71 556 aaPredicted RBP17.26■□□□□ 0.35
ITGB1-202ENST00000396033 KDM5DQ9BY66 1539 aa17.26■□□□□ 0.35
ITGB1-202ENST00000396033 CENPBP07199 599 aaPredicted RBP17.26■□□□□ 0.35
ITGB1-202ENST00000396033 ARHGEF12Q9NZN5 1544 aa17.25■□□□□ 0.35
ITGB1-202ENST00000396033 TEX14Q8IWB6 1497 aa17.25■□□□□ 0.35
ITGB1-202ENST00000396033 ABCC1P33527 1531 aa17.24■□□□□ 0.35
ITGB1-202ENST00000396033 YTHDC1Q96MU7 727 aaKnown RBP17.24■□□□□ 0.35
ITGB1-202ENST00000396033 PLXNC1O60486 1568 aa17.23■□□□□ 0.35
ITGB1-202ENST00000396033 ARAP3Q8WWN8 1544 aa17.22■□□□□ 0.35
ITGB1-202ENST00000396033 DDX10Q13206 875 aaKnown RBP17.2■□□□□ 0.34
ITGB1-202ENST00000396033 ASXL2Q76L83 1435 aa17.19■□□□□ 0.34
ITGB1-202ENST00000396033 ABCA9Q8IUA7 1624 aa17.19■□□□□ 0.34
ITGB1-202ENST00000396033 TRAPPC8Q9Y2L5 1435 aa17.18■□□□□ 0.34
ITGB1-202ENST00000396033 FAM135AQ9P2D6 1515 aa17.18■□□□□ 0.34
ITGB1-202ENST00000396033 DUOX2Q9NRD8 1548 aa17.17■□□□□ 0.34
ITGB1-202ENST00000396033 UNC13BO14795 1591 aa17.17■□□□□ 0.34
ITGB1-202ENST00000396033 NPM1P06748 294 aaKnown RBP eCLIP17.15■□□□□ 0.34
ITGB1-202ENST00000396033 FANCAO15360 1455 aa17.15■□□□□ 0.34
ITGB1-202ENST00000396033 ERBINQ96RT1 1412 aa17.14■□□□□ 0.33
ITGB1-202ENST00000396033 HSPA5P11021 654 aaKnown RBP17.14■□□□□ 0.33
ITGB1-202ENST00000396033 NBPF8Q3BBV2 869 aa17.14■□□□□ 0.33
ITGB1-202ENST00000396033 EIF4G2P78344 907 aaKnown RBP eCLIP17.13■□□□□ 0.33
ITGB1-202ENST00000396033 SPAG9O60271 1321 aaKnown RBP17.12■□□□□ 0.33
ITGB1-202ENST00000396033 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.12■□□□□ 0.331e-12■□□□□ 10
ITGB1-202ENST00000396033 ZFYVE16Q7Z3T8 1539 aa17.11■□□□□ 0.33
ITGB1-202ENST00000396033 AFAP1Q8N556 730 aa17.1■□□□□ 0.33
ITGB1-202ENST00000396033 IQGAP3Q86VI3 1631 aa17.1■□□□□ 0.33
ITGB1-202ENST00000396033 MYT1Q01538 1121 aa17.1■□□□□ 0.33
ITGB1-202ENST00000396033 RTEL1-TNFRSF6BF6WH68 1400 aa17.1■□□□□ 0.33
ITGB1-202ENST00000396033 ADGRL1O94910 1474 aa17.09■□□□□ 0.33
ITGB1-202ENST00000396033 MAGI2Q86UL8 1455 aa17.08■□□□□ 0.33
ITGB1-202ENST00000396033 ZNF326Q5BKZ1 582 aaKnown RBP17.06■□□□□ 0.32
ITGB1-202ENST00000396033 SCAPERQ9BY12 1400 aa17.06■□□□□ 0.32
ITGB1-202ENST00000396033 ATP7AQ04656 1500 aa17.06■□□□□ 0.32
ITGB1-202ENST00000396033 INO80Q9ULG1 1556 aaPredicted RBP17.05■□□□□ 0.32
ITGB1-202ENST00000396033 CCDC144AA2RUR9 1427 aa17.04■□□□□ 0.32
ITGB1-202ENST00000396033 WASHC2AQ641Q2 1341 aa17.03■□□□□ 0.32
ITGB1-202ENST00000396033 MYT1LQ9UL68 1186 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms