RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 NCOA2Q15596 1464 aa7.72□□□□□ -1.17
RFFL-202ENST00000394597 RRBP1Q9P2E9 1410 aaKnown RBP7.72□□□□□ -1.17
RFFL-202ENST00000394597 STAG3Q9UJ98 1225 aa7.72□□□□□ -1.17
RFFL-202ENST00000394597 ZBTB47Q9UFB7 747 aaPredicted RBP7.71□□□□□ -1.18
RFFL-202ENST00000394597 WDR62O43379 1518 aa7.71□□□□□ -1.18
RFFL-202ENST00000394597 RGL3Q3MIN7 710 aa7.7□□□□□ -1.18
RFFL-202ENST00000394597 HIRIP3Q9BW71 556 aaPredicted RBP7.7□□□□□ -1.18
RFFL-202ENST00000394597 DHX57Q6P158 1386 aaKnown RBP7.7□□□□□ -1.18
RFFL-202ENST00000394597 PKD2Q13563 968 aa7.7□□□□□ -1.18
RFFL-202ENST00000394597 MAP3K1Q13233 1512 aa7.7□□□□□ -1.18
RFFL-202ENST00000394597 HECW1Q76N89 1606 aa7.69□□□□□ -1.18
RFFL-202ENST00000394597 NUP155O75694 1391 aa7.69□□□□□ -1.18
RFFL-202ENST00000394597 ZNF644Q9H582 1327 aaPredicted RBP7.69□□□□□ -1.18
RFFL-202ENST00000394597 CYB5RLQ6IPT4 315 aa7.69□□□□□ -1.18
RFFL-202ENST00000394597 NPM2Q86SE8 214 aaKnown RBP7.69□□□□□ -1.18
RFFL-202ENST00000394597 FOXD1Q16676 465 aa7.68□□□□□ -1.18
RFFL-202ENST00000394597 EHBP1L1Q8N3D4 1523 aa7.68□□□□□ -1.18
RFFL-202ENST00000394597 KANK1Q14678 1352 aa7.68□□□□□ -1.18
RFFL-202ENST00000394597 SPAG9O60271 1321 aaKnown RBP7.68□□□□□ -1.18
RFFL-202ENST00000394597 EPRSP07814 1512 aaKnown RBP7.68□□□□□ -1.18
RFFL-202ENST00000394597 ERICH6BQ5W0A0 696 aa7.68□□□□□ -1.18
RFFL-202ENST00000394597 PCF11O94913 1555 aaKnown RBP7.68□□□□□ -1.18
RFFL-202ENST00000394597 IRX6P78412 446 aaPredicted RBP7.67□□□□□ -1.18
RFFL-202ENST00000394597 TROQ12816 1431 aaPredicted RBP7.67□□□□□ -1.18
RFFL-202ENST00000394597 MIA2Q96PC5 1412 aa7.66□□□□□ -1.18
RFFL-202ENST00000394597 PPP1R15AO75807 674 aaPredicted RBP7.66□□□□□ -1.18
RFFL-202ENST00000394597 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.65□□□□□ -1.18
RFFL-202ENST00000394597 UACAQ9BZF9 1416 aa7.65□□□□□ -1.18
RFFL-202ENST00000394597 ADAMTS12P58397 1594 aa7.65□□□□□ -1.18
RFFL-202ENST00000394597 ABCA5Q8WWZ7 1642 aa7.65□□□□□ -1.18
RFFL-202ENST00000394597 NOP58Q9Y2X3 529 aaKnown RBP7.65□□□□□ -1.18
RFFL-202ENST00000394597 CARD11Q9BXL7 1154 aa7.64□□□□□ -1.19
RFFL-202ENST00000394597 CDK13Q14004 1512 aaKnown RBP7.64□□□□□ -1.19
RFFL-202ENST00000394597 DCAF11Q8TEB1 546 aa7.64□□□□□ -1.19
RFFL-202ENST00000394597 GGT6Q6P531 493 aa7.64□□□□□ -1.19
RFFL-202ENST00000394597 CTTNBP2Q8WZ74 1663 aa7.64□□□□□ -1.19
RFFL-202ENST00000394597 PLB1Q6P1J6 1458 aa7.64□□□□□ -1.19
RFFL-202ENST00000394597 SUPT6HQ7KZ85 1726 aaKnown RBP7.64□□□□□ -1.19
RFFL-202ENST00000394597 PLPPR3Q6T4P5 718 aa7.63□□□□□ -1.19
RFFL-202ENST00000394597 ARID4BQ4LE39 1312 aaPredicted RBP7.63□□□□□ -1.19
RFFL-202ENST00000394597 TARBP1Q13395 1621 aaKnown RBP7.63□□□□□ -1.19
RFFL-202ENST00000394597 KIF3BO15066 747 aa7.63□□□□□ -1.19
RFFL-202ENST00000394597 EIF4G3O43432 1585 aaKnown RBP7.63□□□□□ -1.19
RFFL-202ENST00000394597 HNRNPUQ00839 825 aaKnown RBP eCLIP7.63□□□□□ -1.19
RFFL-202ENST00000394597 SALL2Q9Y467 1007 aaPredicted RBP7.62□□□□□ -1.19
RFFL-202ENST00000394597 WDR97A6NE52 1622 aa7.62□□□□□ -1.19
RFFL-202ENST00000394597 UGGT2Q9NYU1 1516 aa7.62□□□□□ -1.19
RFFL-202ENST00000394597 TRHP20396 242 aaPredicted RBP7.62□□□□□ -1.19
RFFL-202ENST00000394597 L3MBTL2Q969R5 705 aa7.62□□□□□ -1.19
RFFL-202ENST00000394597 NEFMP07197 916 aa7.61□□□□□ -1.19
RFFL-202ENST00000394597 PBRM1Q86U86 1689 aa7.61□□□□□ -1.19
RFFL-202ENST00000394597 KIF15Q9NS87 1388 aa7.59□□□□□ -1.19
RFFL-202ENST00000394597 ARHGAP5Q13017 1502 aa7.59□□□□□ -1.19
RFFL-202ENST00000394597 HSPA5P11021 654 aaKnown RBP7.59□□□□□ -1.19
RFFL-202ENST00000394597 THOC2Q8NI27 1593 aaKnown RBP7.59□□□□□ -1.2
RFFL-202ENST00000394597 HFM1A2PYH4 1435 aa7.58□□□□□ -1.2
RFFL-202ENST00000394597 NUP160Q12769 1436 aa7.58□□□□□ -1.2
RFFL-202ENST00000394597 ANKRD50Q9ULJ7 1429 aa7.58□□□□□ -1.2
RFFL-202ENST00000394597 CDCA8Q53HL2 280 aa7.58□□□□□ -1.2
RFFL-202ENST00000394597 FAM69CQ0P6D2 419 aa7.58□□□□□ -1.2
RFFL-202ENST00000394597 MLECQ14165 292 aa7.58□□□□□ -1.2
RFFL-202ENST00000394597 AFAP1Q8N556 730 aa7.57□□□□□ -1.2
RFFL-202ENST00000394597 TMC1Q8TDI8 760 aa7.57□□□□□ -1.2
RFFL-202ENST00000394597 DAPK1P53355 1430 aa7.57□□□□□ -1.2
RFFL-202ENST00000394597 PLEKHH2Q8IVE3 1493 aa7.57□□□□□ -1.2
RFFL-202ENST00000394597 FAM9BQ8IZU0 186 aa7.57□□□□□ -1.2
RFFL-202ENST00000394597 WASHC2CQ9Y4E1 1318 aa7.57□□□□□ -1.2
RFFL-202ENST00000394597 KIAA0556O60303 1618 aa7.57□□□□□ -1.2
RFFL-202ENST00000394597 RAPGEF6Q8TEU7 1601 aa7.57□□□□□ -1.2
RFFL-202ENST00000394597 MRS2Q9HD23 443 aa7.56□□□□□ -1.2
RFFL-202ENST00000394597 C9orf84Q5VXU9 1444 aa7.55□□□□□ -1.2
RFFL-202ENST00000394597 PKNOX2Q96KN3 472 aa7.55□□□□□ -1.2
RFFL-202ENST00000394597 SENP3Q9H4L4 574 aaPredicted RBP7.55□□□□□ -1.2
RFFL-202ENST00000394597 LAS1LQ9Y4W2 734 aaKnown RBP7.55□□□□□ -1.2
RFFL-202ENST00000394597 PTPN23Q9H3S7 1636 aa7.55□□□□□ -1.2
RFFL-202ENST00000394597 FANCIQ9NVI1 1328 aa7.55□□□□□ -1.2
RFFL-202ENST00000394597 ROCK1Q13464 1354 aa7.55□□□□□ -1.2
RFFL-202ENST00000394597 NUP153P49790 1475 aaKnown RBP7.55□□□□□ -1.2
RFFL-202ENST00000394597 ARHGEF11O15085 1522 aa7.55□□□□□ -1.2
RFFL-202ENST00000394597 ATP10BO94823 1461 aa7.55□□□□□ -1.2
RFFL-202ENST00000394597 DISP1Q96F81 1524 aa7.55□□□□□ -1.2
RFFL-202ENST00000394597 NAIPQ13075 1403 aa7.55□□□□□ -1.2
RFFL-202ENST00000394597 CCDC144AA2RUR9 1427 aa7.54□□□□□ -1.2
RFFL-202ENST00000394597 TMF1P82094 1093 aa7.54□□□□□ -1.2
RFFL-202ENST00000394597 SAMD9Q5K651 1589 aa7.53□□□□□ -1.2
RFFL-202ENST00000394597 ABCC5O15440 1437 aa7.53□□□□□ -1.2
RFFL-202ENST00000394597 HDGFP51858 240 aaKnown RBP7.53□□□□□ -1.2
RFFL-202ENST00000394597 KIF14Q15058 1648 aa7.53□□□□□ -1.2
RFFL-202ENST00000394597 PPP4R2Q9NY27 417 aa7.53□□□□□ -1.2
RFFL-202ENST00000394597 ROCK2O75116 1388 aaKnown RBP7.53□□□□□ -1.2
RFFL-202ENST00000394597 CAMSAP2Q08AD1 1489 aa7.53□□□□□ -1.2
RFFL-202ENST00000394597 PPM1GO15355 546 aaPredicted RBP7.52□□□□□ -1.21
RFFL-202ENST00000394597 KNSTRNQ9Y448 316 aa7.52□□□□□ -1.21
RFFL-202ENST00000394597 CEP170Q5SW79 1584 aa7.52□□□□□ -1.21
RFFL-202ENST00000394597 GPATCH8Q9UKJ3 1502 aaKnown RBP7.52□□□□□ -1.21
RFFL-202ENST00000394597 VSIG10Q8N0Z9 540 aa7.51□□□□□ -1.21
RFFL-202ENST00000394597 CFAP43Q8NDM7 1665 aa7.51□□□□□ -1.21
RFFL-202ENST00000394597 B4GALNT3Q6L9W6 998 aa7.51□□□□□ -1.21
RFFL-202ENST00000394597 ARXQ96QS3 562 aa7.51□□□□□ -1.21
RFFL-202ENST00000394597 UBE2Q2Q8WVN8 375 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms