RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 HIRIP3Q9BW71 556 aaPredicted RBP21.72■■□□□ 1.07
GPC3-202ENST00000394299 DENND4BO75064 1496 aaPredicted RBP21.71■■□□□ 1.07
GPC3-202ENST00000394299 CAMSAP2Q08AD1 1489 aa21.71■■□□□ 1.07
GPC3-202ENST00000394299 YTHDC1Q96MU7 727 aaKnown RBP21.7■■□□□ 1.07
GPC3-202ENST00000394299 MPHOSPH9Q99550 1183 aa21.7■■□□□ 1.07
GPC3-202ENST00000394299 TIMELESSQ9UNS1 1208 aa21.7■■□□□ 1.06
GPC3-202ENST00000394299 AKNAQ7Z591 1439 aa21.69■■□□□ 1.06
GPC3-202ENST00000394299 GCC2Q8IWJ2 1684 aa21.69■■□□□ 1.06
GPC3-202ENST00000394299 DNMT1P26358 1616 aaKnown RBP21.69■■□□□ 1.06
GPC3-202ENST00000394299 TONSLQ96HA7 1378 aa21.68■■□□□ 1.06
GPC3-202ENST00000394299 ROCK1Q13464 1354 aa21.66■■□□□ 1.06
GPC3-202ENST00000394299 ADCY10Q96PN6 1610 aa21.66■■□□□ 1.06
GPC3-202ENST00000394299 ABCC10Q5T3U5 1492 aa21.65■■□□□ 1.06
GPC3-202ENST00000394299 SHROOM2Q13796 1616 aa21.63■■□□□ 1.05
GPC3-202ENST00000394299 HNRNPMP52272 730 aaKnown RBP eCLIP21.62■■□□□ 1.056e-7■■■□□ 17.1
GPC3-202ENST00000394299 SCAF1Q9H7N4 1312 aaKnown RBP21.61■■□□□ 1.05
GPC3-202ENST00000394299 ACIN1Q9UKV3 1341 aaKnown RBP21.61■■□□□ 1.05
GPC3-202ENST00000394299 ITSN2Q9NZM3 1697 aa21.6■■□□□ 1.05
GPC3-202ENST00000394299 NCOA1Q15788 1441 aa21.6■■□□□ 1.05
GPC3-202ENST00000394299 CDC42BPAQ5VT25 1732 aa21.59■■□□□ 1.05
GPC3-202ENST00000394299 KCNH8Q96L42 1107 aa21.58■■□□□ 1.05
GPC3-202ENST00000394299 SLC4A1APQ9BWU0 796 aaKnown RBP21.58■■□□□ 1.04
GPC3-202ENST00000394299 DDX10Q13206 875 aaKnown RBP21.54■■□□□ 1.04
GPC3-202ENST00000394299 CLASP1Q7Z460 1538 aa21.53■■□□□ 1.04
GPC3-202ENST00000394299 CENPBP07199 599 aaPredicted RBP21.53■■□□□ 1.04
GPC3-202ENST00000394299 KDM5BQ9UGL1 1544 aa21.53■■□□□ 1.04
GPC3-202ENST00000394299 ANKRD30AQ9BXX3 1397 aa21.51■■□□□ 1.03
GPC3-202ENST00000394299 TSPY4P0CV99 314 aa21.51■■□□□ 1.03
GPC3-202ENST00000394299 TSPY10P0CW01 314 aa21.51■■□□□ 1.03
GPC3-202ENST00000394299 L3MBTL2Q969R5 705 aa21.5■■□□□ 1.03
GPC3-202ENST00000394299 ANKRD30BQ9BXX2 1392 aa21.5■■□□□ 1.03
GPC3-202ENST00000394299 ABCC2Q92887 1545 aa21.49■■□□□ 1.03
GPC3-202ENST00000394299 ADGRL2O95490 1459 aa21.48■■□□□ 1.03
GPC3-202ENST00000394299 C9orf84Q5VXU9 1444 aa21.48■■□□□ 1.03
GPC3-202ENST00000394299 ANKRD50Q9ULJ7 1429 aa21.46■■□□□ 1.03
GPC3-202ENST00000394299 CROCC2H7BZ55 1655 aa21.46■■□□□ 1.03
GPC3-202ENST00000394299 PZPP20742 1482 aa21.46■■□□□ 1.03
GPC3-202ENST00000394299 MBD5Q9P267 1494 aa21.46■■□□□ 1.03
GPC3-202ENST00000394299 CDC42BPBQ9Y5S2 1711 aa21.44■■□□□ 1.02
GPC3-202ENST00000394299 TTC37Q6PGP7 1564 aa21.44■■□□□ 1.02
GPC3-202ENST00000394299 ADGBQ8N7X0 1667 aa21.44■■□□□ 1.02
GPC3-202ENST00000394299 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.44■■□□□ 1.02
GPC3-202ENST00000394299 PKD2Q13563 968 aa21.43■■□□□ 1.02
GPC3-202ENST00000394299 SAMD9LQ8IVG5 1584 aa21.43■■□□□ 1.02
GPC3-202ENST00000394299 ARHGAP5Q13017 1502 aa21.39■■□□□ 1.01
GPC3-202ENST00000394299 NUP155O75694 1391 aa21.39■■□□□ 1.01
GPC3-202ENST00000394299 KIF15Q9NS87 1388 aa21.39■■□□□ 1.01
GPC3-202ENST00000394299 NBPF8Q3BBV2 869 aa21.39■■□□□ 1.01
GPC3-202ENST00000394299 PREX2Q70Z35 1606 aa21.39■■□□□ 1.01
GPC3-202ENST00000394299 RPRD2Q5VT52 1461 aaKnown RBP21.37■■□□□ 1.01
GPC3-202ENST00000394299 SHANK2Q9UPX8 1470 aa21.37■■□□□ 1.01
GPC3-202ENST00000394299 GTF3C3Q9Y5Q9 886 aa21.37■■□□□ 1.01
GPC3-202ENST00000394299 ZCCHC11Q5TAX3 1644 aaKnown RBP21.36■■□□□ 1.01
GPC3-202ENST00000394299 HSPA5P11021 654 aaKnown RBP21.36■■□□□ 1.01
GPC3-202ENST00000394299 SYCP2Q9BX26 1530 aa21.36■■□□□ 1.01
GPC3-202ENST00000394299 CCDC141Q6ZP82 1450 aa21.35■■□□□ 1.01
GPC3-202ENST00000394299 ARHGEF5Q12774 1597 aa21.34■■□□□ 1.01
GPC3-202ENST00000394299 UHRF1BP1LA0JNW5 1464 aa21.33■■□□□ 1.01
GPC3-202ENST00000394299 KIAA1107Q9UPP5 1409 aa21.33■■□□□ 1.01
GPC3-202ENST00000394299 RSPH4AQ5TD94 716 aa21.32■■□□□ 1
GPC3-202ENST00000394299 ARHGEF12Q9NZN5 1544 aa21.31■■□□□ 1
GPC3-202ENST00000394299 TEX14Q8IWB6 1497 aa21.3■■□□□ 1
GPC3-202ENST00000394299 PLCH2O75038 1416 aa21.28■■□□□ 1
GPC3-202ENST00000394299 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.28■■□□□ 16e-7■□□□□ 8.4
GPC3-202ENST00000394299 EFCAB2Q5VUJ9 269 aa21.28■■□□□ 1
GPC3-202ENST00000394299 OSCARQ8IYS5 282 aa21.28■■□□□ 1
GPC3-202ENST00000394299 EIF4G2P78344 907 aaKnown RBP eCLIP21.27■■□□□ 1
GPC3-202ENST00000394299 ZNF326Q5BKZ1 582 aaKnown RBP21.26■□□□□ 0.99
GPC3-202ENST00000394299 MYO5CQ9NQX4 1742 aa21.26■□□□□ 0.99
GPC3-202ENST00000394299 C11orf95C9JLR9 678 aaPredicted RBP21.24■□□□□ 0.99
GPC3-202ENST00000394299 WASHC2AQ641Q2 1341 aa21.24■□□□□ 0.99
GPC3-202ENST00000394299 AFAP1Q8N556 730 aa21.23■□□□□ 0.99
GPC3-202ENST00000394299 TRAPPC8Q9Y2L5 1435 aa21.22■□□□□ 0.99
GPC3-202ENST00000394299 PLEKHH2Q8IVE3 1493 aa21.2■□□□□ 0.98
GPC3-202ENST00000394299 ANP32CO43423 234 aa21.18■□□□□ 0.98
GPC3-202ENST00000394299 KDM2AQ9Y2K7 1162 aa21.18■□□□□ 0.98
GPC3-202ENST00000394299 KDM5DQ9BY66 1539 aa21.17■□□□□ 0.98
GPC3-202ENST00000394299 WDR7Q9Y4E6 1490 aa21.16■□□□□ 0.98
GPC3-202ENST00000394299 FAM135AQ9P2D6 1515 aa21.15■□□□□ 0.98
GPC3-202ENST00000394299 MAST1Q9Y2H9 1570 aa21.15■□□□□ 0.98
GPC3-202ENST00000394299 ABCC1P33527 1531 aa21.12■□□□□ 0.97
GPC3-202ENST00000394299 ASXL2Q76L83 1435 aa21.12■□□□□ 0.97
GPC3-202ENST00000394299 PELP1Q8IZL8 1130 aaKnown RBP21.12■□□□□ 0.97
GPC3-202ENST00000394299 SPAG9O60271 1321 aaKnown RBP21.12■□□□□ 0.97
GPC3-202ENST00000394299 DCAF11Q8TEB1 546 aa21.11■□□□□ 0.97
GPC3-202ENST00000394299 RGL3Q3MIN7 710 aa21.1■□□□□ 0.97
GPC3-202ENST00000394299 SPATA31E1Q6ZUB1 1445 aa21.1■□□□□ 0.97
GPC3-202ENST00000394299 NPM1P06748 294 aaKnown RBP eCLIP21.08■□□□□ 0.96
GPC3-202ENST00000394299 MYT1LQ9UL68 1186 aa21.08■□□□□ 0.96
GPC3-202ENST00000394299 PLXNC1O60486 1568 aa21.07■□□□□ 0.96
GPC3-202ENST00000394299 FANCAO15360 1455 aa21.07■□□□□ 0.96
GPC3-202ENST00000394299 CCDC7Q96M83 1385 aa21.07■□□□□ 0.96
GPC3-202ENST00000394299 DUOX2Q9NRD8 1548 aa21.06■□□□□ 0.96
GPC3-202ENST00000394299 PLA2R1Q13018 1463 aa21.06■□□□□ 0.96
GPC3-202ENST00000394299 KIF7Q2M1P5 1343 aa21.05■□□□□ 0.96
GPC3-202ENST00000394299 CCER2I3L3R5 266 aa21.04■□□□□ 0.96
GPC3-202ENST00000394299 UNC13BO14795 1591 aa21.03■□□□□ 0.96
GPC3-202ENST00000394299 SCAPERQ9BY12 1400 aa21.02■□□□□ 0.96
GPC3-202ENST00000394299 POLR3GLQ9BT43 218 aa21.02■□□□□ 0.96
GPC3-202ENST00000394299 USP47Q96K76 1375 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms