RNA–Protein interactions for RNA: ENST00000393454.6

TDP1-203, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 2,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-203ENST00000393454 NPM1P06748 294 aaKnown RBP eCLIP12.76□□□□□ -0.37
TDP1-203ENST00000393454 DAPK1P53355 1430 aa12.76□□□□□ -0.37
TDP1-203ENST00000393454 DNMT1P26358 1616 aaKnown RBP12.75□□□□□ -0.37
TDP1-203ENST00000393454 HFM1A2PYH4 1435 aa12.75□□□□□ -0.37
TDP1-203ENST00000393454 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.75□□□□□ -0.37
TDP1-203ENST00000393454 ABCC5O15440 1437 aa12.74□□□□□ -0.37
TDP1-203ENST00000393454 TTC37Q6PGP7 1564 aa12.74□□□□□ -0.37
TDP1-203ENST00000393454 NAIPQ13075 1403 aa12.73□□□□□ -0.37
TDP1-203ENST00000393454 PREX2Q70Z35 1606 aa12.73□□□□□ -0.37
TDP1-203ENST00000393454 CDC42BPBQ9Y5S2 1711 aa12.73□□□□□ -0.37
TDP1-203ENST00000393454 MYO5CQ9NQX4 1742 aa12.72□□□□□ -0.37
TDP1-203ENST00000393454 ARHGAP5Q13017 1502 aa12.71□□□□□ -0.37
TDP1-203ENST00000393454 CLSPNQ9HAW4 1339 aa12.71□□□□□ -0.37
TDP1-203ENST00000393454 WDR7Q9Y4E6 1490 aa12.71□□□□□ -0.37
TDP1-203ENST00000393454 HNRNPMP52272 730 aaKnown RBP eCLIP12.7□□□□□ -0.38
TDP1-203ENST00000393454 GCC2Q8IWJ2 1684 aa12.7□□□□□ -0.38
TDP1-203ENST00000393454 ASXL2Q76L83 1435 aa12.69□□□□□ -0.38
TDP1-203ENST00000393454 AKNAQ7Z591 1439 aa12.69□□□□□ -0.38
TDP1-203ENST00000393454 ROCK1Q13464 1354 aa12.69□□□□□ -0.38
TDP1-203ENST00000393454 CYB5RLQ6IPT4 315 aa12.69□□□□□ -0.38
TDP1-203ENST00000393454 SAMD9LQ8IVG5 1584 aa12.68□□□□□ -0.38
TDP1-203ENST00000393454 TSPY4P0CV99 314 aa12.68□□□□□ -0.38
TDP1-203ENST00000393454 TSPY10P0CW01 314 aa12.68□□□□□ -0.38
TDP1-203ENST00000393454 CROCC2H7BZ55 1655 aa12.68□□□□□ -0.38
TDP1-203ENST00000393454 RIMBP3CA6NJZ7 1639 aa12.67□□□□□ -0.38
TDP1-203ENST00000393454 RIMBP3BA6NNM3 1639 aa12.67□□□□□ -0.38
TDP1-203ENST00000393454 RIMBP3Q9UFD9 1639 aa12.67□□□□□ -0.38
TDP1-203ENST00000393454 ADGBQ8N7X0 1667 aa12.67□□□□□ -0.38
TDP1-203ENST00000393454 EFCAB2Q5VUJ9 269 aa12.67□□□□□ -0.38
TDP1-203ENST00000393454 TRIM52Q96A61 297 aa12.67□□□□□ -0.38
TDP1-203ENST00000393454 PLCH2O75038 1416 aa12.67□□□□□ -0.38
TDP1-203ENST00000393454 ANKRD30AQ9BXX3 1397 aa12.65□□□□□ -0.38
TDP1-203ENST00000393454 KDM6BO15054 1643 aa12.65□□□□□ -0.39
TDP1-203ENST00000393454 ARHGEF5Q12774 1597 aa12.64□□□□□ -0.39
TDP1-203ENST00000393454 NCOA1Q15788 1441 aa12.64□□□□□ -0.39
TDP1-203ENST00000393454 RSPH4AQ5TD94 716 aa12.64□□□□□ -0.39
TDP1-203ENST00000393454 C9orf84Q5VXU9 1444 aa12.64□□□□□ -0.39
TDP1-203ENST00000393454 MAPKBP1O60336 1514 aa12.64□□□□□ -0.39
TDP1-203ENST00000393454 SYCP2Q9BX26 1530 aa12.64□□□□□ -0.39
TDP1-203ENST00000393454 CCDC141Q6ZP82 1450 aa12.64□□□□□ -0.39
TDP1-203ENST00000393454 MBD5Q9P267 1494 aa12.64□□□□□ -0.39
TDP1-203ENST00000393454 PLEKHH2Q8IVE3 1493 aa12.63□□□□□ -0.39
TDP1-203ENST00000393454 ADGRL2O95490 1459 aa12.63□□□□□ -0.39
TDP1-203ENST00000393454 SHANK2Q9UPX8 1470 aa12.63□□□□□ -0.39
TDP1-203ENST00000393454 ABCA9Q8IUA7 1624 aa12.62□□□□□ -0.39
TDP1-203ENST00000393454 KIAA1107Q9UPP5 1409 aa12.61□□□□□ -0.39
TDP1-203ENST00000393454 NEUROD1Q13562 356 aa12.6□□□□□ -0.39
TDP1-203ENST00000393454 ACIN1Q9UKV3 1341 aaKnown RBP12.59□□□□□ -0.39
TDP1-203ENST00000393454 ARAP3Q8WWN8 1544 aa12.59□□□□□ -0.39
TDP1-203ENST00000393454 SIN3AQ96ST3 1273 aa12.59□□□□□ -0.39
TDP1-203ENST00000393454 ARHGEF12Q9NZN5 1544 aa12.58□□□□□ -0.4
TDP1-203ENST00000393454 FANCAO15360 1455 aa12.58□□□□□ -0.4
TDP1-203ENST00000393454 ABCC1P33527 1531 aa12.58□□□□□ -0.4
TDP1-203ENST00000393454 KIF15Q9NS87 1388 aa12.57□□□□□ -0.4
TDP1-203ENST00000393454 ANKRD50Q9ULJ7 1429 aa12.57□□□□□ -0.4
TDP1-203ENST00000393454 MPHOSPH9Q99550 1183 aa12.57□□□□□ -0.4
TDP1-203ENST00000393454 CD109Q6YHK3 1445 aa12.56□□□□□ -0.4
TDP1-203ENST00000393454 MAST1Q9Y2H9 1570 aa12.55□□□□□ -0.4
TDP1-203ENST00000393454 TRAPPC8Q9Y2L5 1435 aa12.55□□□□□ -0.4
TDP1-203ENST00000393454 SLC4A1APQ9BWU0 796 aaKnown RBP12.54□□□□□ -0.4
TDP1-203ENST00000393454 ADGRL1O94910 1474 aa12.53□□□□□ -0.4
TDP1-203ENST00000393454 AFAP1Q8N556 730 aa12.53□□□□□ -0.4
TDP1-203ENST00000393454 SPAG9O60271 1321 aaKnown RBP12.53□□□□□ -0.4
TDP1-203ENST00000393454 MYT1LQ9UL68 1186 aa12.53□□□□□ -0.4
TDP1-203ENST00000393454 SCAPERQ9BY12 1400 aa12.52□□□□□ -0.4
TDP1-203ENST00000393454 FOXD1Q16676 465 aa12.52□□□□□ -0.41
TDP1-203ENST00000393454 PLXNC1O60486 1568 aa12.51□□□□□ -0.41
TDP1-203ENST00000393454 DENND4BO75064 1496 aaPredicted RBP12.5□□□□□ -0.41
TDP1-203ENST00000393454 NUP155O75694 1391 aa12.5□□□□□ -0.41
TDP1-203ENST00000393454 CFAP74Q9C0B2 1584 aa12.5□□□□□ -0.41
TDP1-203ENST00000393454 PZPP20742 1482 aa12.49□□□□□ -0.41
TDP1-203ENST00000393454 TIMELESSQ9UNS1 1208 aa12.49□□□□□ -0.41
TDP1-203ENST00000393454 TONSLQ96HA7 1378 aa12.48□□□□□ -0.41
TDP1-203ENST00000393454 DUOX2Q9NRD8 1548 aa12.48□□□□□ -0.41
TDP1-203ENST00000393454 FAM69CQ0P6D2 419 aa12.48□□□□□ -0.41
TDP1-203ENST00000393454 RTEL1-TNFRSF6BF6WH68 1400 aa12.47□□□□□ -0.41
TDP1-203ENST00000393454 PKD2Q13563 968 aa12.47□□□□□ -0.41
TDP1-203ENST00000393454 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.47□□□□□ -0.41
TDP1-203ENST00000393454 ZNF316A6NFI3 1004 aaPredicted RBP12.46□□□□□ -0.41
TDP1-203ENST00000393454 ZFYVE16Q7Z3T8 1539 aa12.46□□□□□ -0.42
TDP1-203ENST00000393454 GLI2P10070 1586 aa12.46□□□□□ -0.42
TDP1-203ENST00000393454 MAP3K4Q9Y6R4 1608 aa12.45□□□□□ -0.42
TDP1-203ENST00000393454 ATP7AQ04656 1500 aa12.45□□□□□ -0.42
TDP1-203ENST00000393454 ERBINQ96RT1 1412 aa12.44□□□□□ -0.42
TDP1-203ENST00000393454 ZNF518AQ6AHZ1 1483 aa12.44□□□□□ -0.42
TDP1-203ENST00000393454 NEO1Q92859 1461 aa12.44□□□□□ -0.42
TDP1-203ENST00000393454 ANKRD30BQ9BXX2 1392 aa12.44□□□□□ -0.42
TDP1-203ENST00000393454 DIP2BQ9P265 1576 aa12.44□□□□□ -0.42
TDP1-203ENST00000393454 INO80Q9ULG1 1556 aaPredicted RBP12.44□□□□□ -0.42
TDP1-203ENST00000393454 KDM5DQ9BY66 1539 aa12.43□□□□□ -0.42
TDP1-203ENST00000393454 PPP1R15AO75807 674 aaPredicted RBP12.42□□□□□ -0.42
TDP1-203ENST00000393454 POGZQ7Z3K3 1410 aa12.42□□□□□ -0.42
TDP1-203ENST00000393454 TSPOAP1O95153 1857 aa12.42□□□□□ -0.42
TDP1-203ENST00000393454 UNC13BO14795 1591 aa12.42□□□□□ -0.42
TDP1-203ENST00000393454 FAM135AQ9P2D6 1515 aa12.41□□□□□ -0.42
TDP1-203ENST00000393454 RAPGEF3O95398 923 aa12.41□□□□□ -0.42
TDP1-203ENST00000393454 KIDINS220Q9ULH0 1771 aa12.4□□□□□ -0.42
TDP1-203ENST00000393454 KIF3BO15066 747 aa12.38□□□□□ -0.43
TDP1-203ENST00000393454 DHX29Q7Z478 1369 aaKnown RBP12.38□□□□□ -0.43
TDP1-203ENST00000393454 RPRD2Q5VT52 1461 aaKnown RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms