RNA–Protein interactions for RNA: ENST00000392456.3

CCDC50-202, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CCDC50, Length 2,454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-202ENST00000392456 ZCCHC11Q5TAX3 1644 aaKnown RBP27.67■■■□□ 2.02
CCDC50-202ENST00000392456 CHIC2Q9UKJ5 165 aa27.66■■■□□ 2.02
CCDC50-202ENST00000392456 ZNF777Q9ULD5 760 aaPredicted RBP27.66■■■□□ 2.02
CCDC50-202ENST00000392456 SETD5Q9C0A6 1442 aa27.65■■■□□ 2.02
CCDC50-202ENST00000392456 DIEXFQ68CQ4 756 aaKnown RBP27.64■■■□□ 2.01
CCDC50-202ENST00000392456 DHX57Q6P158 1386 aaKnown RBP27.6■■■□□ 2.01
CCDC50-202ENST00000392456 CDC42BPAQ5VT25 1732 aa27.59■■■□□ 2.01
CCDC50-202ENST00000392456 RRP7BPQ9NSQ0 103 aa27.57■■■□□ 2
CCDC50-202ENST00000392456 CAMSAP2Q08AD1 1489 aa27.57■■■□□ 2
CCDC50-202ENST00000392456 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.55■■■□□ 21e-6■■■■■ 42.9
CCDC50-202ENST00000392456 ITSN2Q9NZM3 1697 aa27.55■■■□□ 2
CCDC50-202ENST00000392456 ABCC5O15440 1437 aa27.55■■■□□ 2
CCDC50-202ENST00000392456 TTC37Q6PGP7 1564 aa27.54■■■□□ 2
CCDC50-202ENST00000392456 DAPK1P53355 1430 aa27.53■■■□□ 2
CCDC50-202ENST00000392456 HFM1A2PYH4 1435 aa27.52■■■□□ 2
CCDC50-202ENST00000392456 NAIPQ13075 1403 aa27.52■■■□□ 2
CCDC50-202ENST00000392456 CYB5RLQ6IPT4 315 aa27.48■■□□□ 1.99
CCDC50-202ENST00000392456 DNMT1P26358 1616 aaKnown RBP27.47■■□□□ 1.99
CCDC50-202ENST00000392456 CDC42BPBQ9Y5S2 1711 aa27.46■■□□□ 1.99
CCDC50-202ENST00000392456 HNRNPMP52272 730 aaKnown RBP eCLIP27.46■■□□□ 1.99
CCDC50-202ENST00000392456 WDR7Q9Y4E6 1490 aa27.44■■□□□ 1.98
CCDC50-202ENST00000392456 ASXL2Q76L83 1435 aa27.44■■□□□ 1.98
CCDC50-202ENST00000392456 PREX2Q70Z35 1606 aa27.42■■□□□ 1.98
CCDC50-202ENST00000392456 NPM1P06748 294 aaKnown RBP eCLIP27.41■■□□□ 1.98
CCDC50-202ENST00000392456 RIMBP3CA6NJZ7 1639 aa27.39■■□□□ 1.98
CCDC50-202ENST00000392456 RIMBP3BA6NNM3 1639 aa27.39■■□□□ 1.98
CCDC50-202ENST00000392456 RIMBP3Q9UFD9 1639 aa27.39■■□□□ 1.98
CCDC50-202ENST00000392456 TSHZ2Q9NRE2 1034 aa27.39■■□□□ 1.98
CCDC50-202ENST00000392456 SAMD9LQ8IVG5 1584 aa27.39■■□□□ 1.98
CCDC50-202ENST00000392456 ARHGAP5Q13017 1502 aa27.39■■□□□ 1.97
CCDC50-202ENST00000392456 AKNAQ7Z591 1439 aa27.39■■□□□ 1.97
CCDC50-202ENST00000392456 KDM6BO15054 1643 aa27.38■■□□□ 1.97
CCDC50-202ENST00000392456 MBD5Q9P267 1494 aa27.36■■□□□ 1.97
CCDC50-202ENST00000392456 PLCH2O75038 1416 aa27.36■■□□□ 1.97
CCDC50-202ENST00000392456 ROCK1Q13464 1354 aa27.35■■□□□ 1.97
CCDC50-202ENST00000392456 MYO5CQ9NQX4 1742 aa27.34■■□□□ 1.97
CCDC50-202ENST00000392456 MAPKBP1O60336 1514 aa27.33■■□□□ 1.97
CCDC50-202ENST00000392456 NCOA1Q15788 1441 aa27.32■■□□□ 1.96
CCDC50-202ENST00000392456 CLSPNQ9HAW4 1339 aa27.31■■□□□ 1.96
CCDC50-202ENST00000392456 GCC2Q8IWJ2 1684 aa27.3■■□□□ 1.96
CCDC50-202ENST00000392456 SYCP2Q9BX26 1530 aa27.29■■□□□ 1.96
CCDC50-202ENST00000392456 EFCAB2Q5VUJ9 269 aa27.28■■□□□ 1.96
CCDC50-202ENST00000392456 ARHGEF12Q9NZN5 1544 aa27.28■■□□□ 1.96
CCDC50-202ENST00000392456 CROCC2H7BZ55 1655 aa27.27■■□□□ 1.96
CCDC50-202ENST00000392456 TSPY4P0CV99 314 aa27.27■■□□□ 1.96
CCDC50-202ENST00000392456 TSPY10P0CW01 314 aa27.27■■□□□ 1.96
CCDC50-202ENST00000392456 C9orf84Q5VXU9 1444 aa27.27■■□□□ 1.96
CCDC50-202ENST00000392456 TRIM52Q96A61 297 aa27.24■■□□□ 1.95
CCDC50-202ENST00000392456 ADGRL2O95490 1459 aa27.24■■□□□ 1.95
CCDC50-202ENST00000392456 ARHGEF5Q12774 1597 aa27.24■■□□□ 1.95
CCDC50-202ENST00000392456 ABCA9Q8IUA7 1624 aa27.23■■□□□ 1.95
CCDC50-202ENST00000392456 CCDC141Q6ZP82 1450 aa27.23■■□□□ 1.95
CCDC50-202ENST00000392456 ANKRD30AQ9BXX3 1397 aa27.22■■□□□ 1.95
CCDC50-202ENST00000392456 SIN3AQ96ST3 1273 aa27.22■■□□□ 1.95
CCDC50-202ENST00000392456 KIAA1107Q9UPP5 1409 aa27.2■■□□□ 1.95
CCDC50-202ENST00000392456 SHANK2Q9UPX8 1470 aa27.2■■□□□ 1.95
CCDC50-202ENST00000392456 YTHDC1Q96MU7 727 aaKnown RBP27.2■■□□□ 1.94
CCDC50-202ENST00000392456 RSPH4AQ5TD94 716 aa27.18■■□□□ 1.94
CCDC50-202ENST00000392456 ADGBQ8N7X0 1667 aa27.18■■□□□ 1.94
CCDC50-202ENST00000392456 TRAPPC8Q9Y2L5 1435 aa27.17■■□□□ 1.94
CCDC50-202ENST00000392456 FANCAO15360 1455 aa27.16■■□□□ 1.94
CCDC50-202ENST00000392456 DENND4BO75064 1496 aaPredicted RBP27.16■■□□□ 1.94
CCDC50-202ENST00000392456 PLEKHH2Q8IVE3 1493 aa27.15■■□□□ 1.94
CCDC50-202ENST00000392456 AFAP1Q8N556 730 aa27.15■■□□□ 1.94
CCDC50-202ENST00000392456 ABCC1P33527 1531 aa27.14■■□□□ 1.94
CCDC50-202ENST00000392456 ARAP3Q8WWN8 1544 aa27.14■■□□□ 1.93
CCDC50-202ENST00000392456 KIF15Q9NS87 1388 aa27.13■■□□□ 1.93
CCDC50-202ENST00000392456 ANKRD50Q9ULJ7 1429 aa27.13■■□□□ 1.93
CCDC50-202ENST00000392456 MPHOSPH9Q99550 1183 aa27.12■■□□□ 1.93
CCDC50-202ENST00000392456 ANO8Q9HCE9 1232 aaPredicted RBP27.12■■□□□ 1.93
CCDC50-202ENST00000392456 FOXD1Q16676 465 aa27.11■■□□□ 1.93
CCDC50-202ENST00000392456 CD109Q6YHK3 1445 aa27.11■■□□□ 1.93
CCDC50-202ENST00000392456 SUPT16HQ9Y5B9 1047 aaKnown RBP27.08■■□□□ 1.93
CCDC50-202ENST00000392456 SCAPERQ9BY12 1400 aa27.05■■□□□ 1.92
CCDC50-202ENST00000392456 ADGRL1O94910 1474 aa27.04■■□□□ 1.92
CCDC50-202ENST00000392456 MAST1Q9Y2H9 1570 aa27.03■■□□□ 1.92
CCDC50-202ENST00000392456 SLC4A1APQ9BWU0 796 aaKnown RBP27.02■■□□□ 1.92
CCDC50-202ENST00000392456 SPAG9O60271 1321 aaKnown RBP27■■□□□ 1.91
CCDC50-202ENST00000392456 PZPP20742 1482 aa27■■□□□ 1.91
CCDC50-202ENST00000392456 SLC24A1O60721 1099 aa26.97■■□□□ 1.91
CCDC50-202ENST00000392456 FAM69CQ0P6D2 419 aa26.97■■□□□ 1.91
CCDC50-202ENST00000392456 NUP155O75694 1391 aa26.96■■□□□ 1.91
CCDC50-202ENST00000392456 PLXNC1O60486 1568 aa26.93■■□□□ 1.9
CCDC50-202ENST00000392456 ZFYVE16Q7Z3T8 1539 aa26.91■■□□□ 1.9
CCDC50-202ENST00000392456 UBE2Q2Q8WVN8 375 aa26.91■■□□□ 1.9
CCDC50-202ENST00000392456 PKD2Q13563 968 aa26.9■■□□□ 1.9
CCDC50-202ENST00000392456 MYT1LQ9UL68 1186 aa26.9■■□□□ 1.9
CCDC50-202ENST00000392456 RTEL1-TNFRSF6BF6WH68 1400 aa26.89■■□□□ 1.9
CCDC50-202ENST00000392456 ANKRD30BQ9BXX2 1392 aa26.89■■□□□ 1.9
CCDC50-202ENST00000392456 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.88■■□□□ 1.891e-6■■□□□ 13.1
CCDC50-202ENST00000392456 MAP3K4Q9Y6R4 1608 aa26.88■■□□□ 1.89
CCDC50-202ENST00000392456 RAPGEF3O95398 923 aa26.88■■□□□ 1.89
CCDC50-202ENST00000392456 DIP2BQ9P265 1576 aa26.87■■□□□ 1.89
CCDC50-202ENST00000392456 DUOX2Q9NRD8 1548 aa26.87■■□□□ 1.89
CCDC50-202ENST00000392456 ZNF316A6NFI3 1004 aaPredicted RBP26.87■■□□□ 1.89
CCDC50-202ENST00000392456 GLI2P10070 1586 aa26.86■■□□□ 1.89
CCDC50-202ENST00000392456 ATP7AQ04656 1500 aa26.85■■□□□ 1.89
CCDC50-202ENST00000392456 INO80Q9ULG1 1556 aaPredicted RBP26.83■■□□□ 1.89
CCDC50-202ENST00000392456 POGZQ7Z3K3 1410 aa26.83■■□□□ 1.88
CCDC50-202ENST00000392456 ZNF518AQ6AHZ1 1483 aa26.82■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms