RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 BAZ1BQ9UIG0 1483 aaKnown RBP16.19■□□□□ 0.18
CCDC88C-204ENST00000389857 TPM4P67936 248 aa16.19■□□□□ 0.18
CCDC88C-204ENST00000389857 GBP4Q96PP9 640 aa16.19■□□□□ 0.18
CCDC88C-204ENST00000389857 WRNQ14191 1432 aaPredicted RBP eCLIP16.18■□□□□ 0.18
CCDC88C-204ENST00000389857 TMX4Q9H1E5 349 aaPredicted RBP16.18■□□□□ 0.18
CCDC88C-204ENST00000389857 DCAF11Q8TEB1 546 aa16.17■□□□□ 0.18
CCDC88C-204ENST00000389857 FHAD1B1AJZ9 1412 aa16.16■□□□□ 0.18
CCDC88C-204ENST00000389857 B4GALNT3Q6L9W6 998 aa16.16■□□□□ 0.18
CCDC88C-204ENST00000389857 SYAP1Q96A49 352 aaPredicted RBP16.16■□□□□ 0.18
CCDC88C-204ENST00000389857 HDGFL2Q7Z4V5 671 aaPredicted RBP16.16■□□□□ 0.18
CCDC88C-204ENST00000389857 SPRYD3Q8NCJ5 442 aa16.16■□□□□ 0.18
CCDC88C-204ENST00000389857 SOX12O15370 315 aa16.15■□□□□ 0.18
CCDC88C-204ENST00000389857 CHMP4AQ9BY43 222 aa16.14■□□□□ 0.17
CCDC88C-204ENST00000389857 EIF4G1Q04637 1599 aaKnown RBP16.14■□□□□ 0.17
CCDC88C-204ENST00000389857 CCDC34Q96HJ3 373 aa16.14■□□□□ 0.17
CCDC88C-204ENST00000389857 TNIKQ9UKE5 1360 aa16.13■□□□□ 0.17
CCDC88C-204ENST00000389857 GPATCH3Q96I76 525 aa16.13■□□□□ 0.17
CCDC88C-204ENST00000389857 KTN1Q86UP2 1357 aaKnown RBP16.13■□□□□ 0.17
CCDC88C-204ENST00000389857 SIN3AQ96ST3 1273 aa16.11■□□□□ 0.17
CCDC88C-204ENST00000389857 CSPP1Q1MSJ5 1256 aa16.09■□□□□ 0.17
CCDC88C-204ENST00000389857 RWDD1Q9H446 243 aaPredicted RBP16.09■□□□□ 0.17
CCDC88C-204ENST00000389857 USP35Q9P2H5 1018 aa16.09■□□□□ 0.17
CCDC88C-204ENST00000389857 PRM3Q9NNZ6 103 aa16.08■□□□□ 0.16
CCDC88C-204ENST00000389857 GOLGA6L1Q8N7Z2 621 aa16.08■□□□□ 0.16
CCDC88C-204ENST00000389857 CCER2I3L3R5 266 aa16.08■□□□□ 0.16
CCDC88C-204ENST00000389857 APBB1O00213 710 aa16.07■□□□□ 0.16
CCDC88C-204ENST00000389857 HDAC5Q9UQL6 1122 aa16.07■□□□□ 0.16
CCDC88C-204ENST00000389857 GORABQ5T7V8 394 aa16.07■□□□□ 0.16
CCDC88C-204ENST00000389857 A0A0U1RQG5 324 aaPredicted RBP16.06■□□□□ 0.16
CCDC88C-204ENST00000389857 ITPRIPQ8IWB1 547 aa16.06■□□□□ 0.16
CCDC88C-204ENST00000389857 SPAG9O60271 1321 aaKnown RBP16.06■□□□□ 0.16
CCDC88C-204ENST00000389857 TIMELESSQ9UNS1 1208 aa16.06■□□□□ 0.16
CCDC88C-204ENST00000389857 MLECQ14165 292 aa16.06■□□□□ 0.16
CCDC88C-204ENST00000389857 CSB-PGBD3P0DP91 1061 aa16.05■□□□□ 0.16
CCDC88C-204ENST00000389857 PAK3O75914 559 aaPredicted RBP16.05■□□□□ 0.16
CCDC88C-204ENST00000389857 HSP90B1P14625 803 aaKnown RBP16.05■□□□□ 0.16
CCDC88C-204ENST00000389857 SAFB2Q14151 953 aaKnown RBP eCLIP16.05■□□□□ 0.16
CCDC88C-204ENST00000389857 PMFBP1Q8TBY8 1022 aa16.05■□□□□ 0.16
CCDC88C-204ENST00000389857 EIF3AQ14152 1382 aaKnown RBP16.04■□□□□ 0.16
CCDC88C-204ENST00000389857 TRHP20396 242 aaPredicted RBP16.04■□□□□ 0.16
CCDC88C-204ENST00000389857 DEKP35659 375 aaKnown RBP16.04■□□□□ 0.16
CCDC88C-204ENST00000389857 TAF7LQ5H9L4 462 aa16.04■□□□□ 0.16
CCDC88C-204ENST00000389857 ARHGAP35Q9NRY4 1499 aa16.03■□□□□ 0.16
CCDC88C-204ENST00000389857 STK31Q9BXU1 1019 aa16.02■□□□□ 0.16
CCDC88C-204ENST00000389857 ZNF330Q9Y3S2 320 aaPredicted RBP16.02■□□□□ 0.16
CCDC88C-204ENST00000389857 AMER1Q5JTC6 1135 aaPredicted RBP16.02■□□□□ 0.16
CCDC88C-204ENST00000389857 STK26Q9P289 416 aa16.02■□□□□ 0.16
CCDC88C-204ENST00000389857 ROCK2O75116 1388 aaKnown RBP16.01■□□□□ 0.15
CCDC88C-204ENST00000389857 HMMRO75330 724 aa16.01■□□□□ 0.15
CCDC88C-204ENST00000389857 CHMP3Q9Y3E7 222 aa16■□□□□ 0.15
CCDC88C-204ENST00000389857 G3V3G9 751 aa16■□□□□ 0.15
CCDC88C-204ENST00000389857 RALBP1Q15311 655 aa16■□□□□ 0.15
CCDC88C-204ENST00000389857 DCAF8Q5TAQ9 597 aa16■□□□□ 0.15
CCDC88C-204ENST00000389857 RASSF8Q8NHQ8 419 aa16■□□□□ 0.15
CCDC88C-204ENST00000389857 U2AF1L5P0DN76 240 aaPredicted RBP15.99■□□□□ 0.15
CCDC88C-204ENST00000389857 U2AF1Q01081 240 aaKnown RBP eCLIP15.99■□□□□ 0.15
CCDC88C-204ENST00000389857 PHF14O94880 888 aa15.99■□□□□ 0.15
CCDC88C-204ENST00000389857 NACADO15069 1562 aa15.99■□□□□ 0.15
CCDC88C-204ENST00000389857 TNNT3P45378 269 aaPredicted RBP15.99■□□□□ 0.15
CCDC88C-204ENST00000389857 CEP89Q96ST8 783 aa15.99■□□□□ 0.15
CCDC88C-204ENST00000389857 RCAN3Q9UKA8 241 aa15.99■□□□□ 0.15
CCDC88C-204ENST00000389857 TRIM6-TRIM34B2RNG4 842 aa15.99■□□□□ 0.15
CCDC88C-204ENST00000389857 SETD5Q9C0A6 1442 aa15.98■□□□□ 0.15
CCDC88C-204ENST00000389857 TCERG1O14776 1098 aaKnown RBP15.98■□□□□ 0.15
CCDC88C-204ENST00000389857 GZF1Q9H116 711 aaPredicted RBP15.97■□□□□ 0.15
CCDC88C-204ENST00000389857 HSPA5P11021 654 aaKnown RBP15.96■□□□□ 0.15
CCDC88C-204ENST00000389857 MYO15BQ96JP2 1530 aa15.95■□□□□ 0.14
CCDC88C-204ENST00000389857 GOLGA6L3A6NEY3 463 aa15.95■□□□□ 0.14
CCDC88C-204ENST00000389857 KIF3AQ9Y496 699 aa15.95■□□□□ 0.14
CCDC88C-204ENST00000389857 TPM3P06753 285 aa15.95■□□□□ 0.14
CCDC88C-204ENST00000389857 GGT6Q6P531 493 aa15.94■□□□□ 0.14
CCDC88C-204ENST00000389857 MFAP1P55081 439 aaKnown RBP15.93■□□□□ 0.14
CCDC88C-204ENST00000389857 LMOD3Q0VAK6 560 aa15.93■□□□□ 0.14
CCDC88C-204ENST00000389857 SMC4Q9NTJ3 1288 aa15.93■□□□□ 0.14
CCDC88C-204ENST00000389857 SLKQ9H2G2 1235 aaPredicted RBP15.92■□□□□ 0.14
CCDC88C-204ENST00000389857 CCDC9Q9Y3X0 531 aaKnown RBP15.92■□□□□ 0.14
CCDC88C-204ENST00000389857 KIF16BQ96L93 1317 aa15.92■□□□□ 0.14
CCDC88C-204ENST00000389857 CREBRFQ8IUR6 639 aa15.92■□□□□ 0.14
CCDC88C-204ENST00000389857 CARMIL2Q6F5E8 1435 aa15.92■□□□□ 0.14
CCDC88C-204ENST00000389857 PKD2Q13563 968 aa15.91■□□□□ 0.14
CCDC88C-204ENST00000389857 TERF2IPQ9NYB0 399 aa15.91■□□□□ 0.14
CCDC88C-204ENST00000389857 RBM19Q9Y4C8 960 aaKnown RBP15.91■□□□□ 0.14
CCDC88C-204ENST00000389857 MARCH6O60337 910 aa15.91■□□□□ 0.14
CCDC88C-204ENST00000389857 ST18O60284 1047 aa15.9■□□□□ 0.14
CCDC88C-204ENST00000389857 PDE4CQ08493 712 aa15.9■□□□□ 0.14
CCDC88C-204ENST00000389857 CARMIL1Q5VZK9 1371 aa15.9■□□□□ 0.14
CCDC88C-204ENST00000389857 CHMP4CQ96CF2 233 aa15.9■□□□□ 0.14
CCDC88C-204ENST00000389857 VPS53Q5VIR6 699 aa15.9■□□□□ 0.14
CCDC88C-204ENST00000389857 CUX2O14529 1486 aa15.88■□□□□ 0.13
CCDC88C-204ENST00000389857 TSR1Q2NL82 804 aaKnown RBP15.88■□□□□ 0.13
CCDC88C-204ENST00000389857 SETQ01105 290 aaPredicted RBP15.88■□□□□ 0.13
CCDC88C-204ENST00000389857 ARID3AQ99856 593 aa15.88■□□□□ 0.13
CCDC88C-204ENST00000389857 TPM2P07951 284 aa15.87■□□□□ 0.13
CCDC88C-204ENST00000389857 SF3A1Q15459 793 aaKnown RBP15.87■□□□□ 0.13
CCDC88C-204ENST00000389857 TPD52L1Q16890 204 aaPredicted RBP15.87■□□□□ 0.13
CCDC88C-204ENST00000389857 FRAT2O75474 233 aaPredicted RBP15.87■□□□□ 0.13
CCDC88C-204ENST00000389857 BAZ1AQ9NRL2 1556 aaPredicted RBP15.87■□□□□ 0.13
CCDC88C-204ENST00000389857 SLC4A10Q6U841 1118 aa15.87■□□□□ 0.13
CCDC88C-204ENST00000389857 EID1Q9Y6B2 187 aa15.86■□□□□ 0.13
CCDC88C-204ENST00000389857 TOMM22Q9NS69 142 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms