RNA–Protein interactions for RNA: ENST00000379361.4

PTCHD1-201, Transcript of patched domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCHD1, Length 13,714 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1-201ENST00000379361 SETQ01105 290 aaPredicted RBP14.12□□□□□ -0.15
PTCHD1-201ENST00000379361 HDAC5Q9UQL6 1122 aa14.12□□□□□ -0.15
PTCHD1-201ENST00000379361 IPO8O15397 1037 aaKnown RBP14.11□□□□□ -0.15
PTCHD1-201ENST00000379361 RGS3P49796 1198 aa14.11□□□□□ -0.15
PTCHD1-201ENST00000379361 GBP4Q96PP9 640 aa14.11□□□□□ -0.15
PTCHD1-201ENST00000379361 CARD11Q9BXL7 1154 aa14.11□□□□□ -0.15
PTCHD1-201ENST00000379361 ZNF330Q9Y3S2 320 aaPredicted RBP14.11□□□□□ -0.15
PTCHD1-201ENST00000379361 MARCH6O60337 910 aa14.1□□□□□ -0.15
PTCHD1-201ENST00000379361 CSB-PGBD3P0DP91 1061 aa14.1□□□□□ -0.15
PTCHD1-201ENST00000379361 GORABQ5T7V8 394 aa14.1□□□□□ -0.15
PTCHD1-201ENST00000379361 HSP90B1P14625 803 aaKnown RBP14.08□□□□□ -0.16
PTCHD1-201ENST00000379361 DCAF8L1A6NGE4 600 aa14.07□□□□□ -0.16
PTCHD1-201ENST00000379361 CCDC9Q9Y3X0 531 aaKnown RBP14.07□□□□□ -0.16
PTCHD1-201ENST00000379361 CHMP3Q9Y3E7 222 aa14.07□□□□□ -0.16
PTCHD1-201ENST00000379361 PHF14O94880 888 aa14.07□□□□□ -0.16
PTCHD1-201ENST00000379361 FRAT2O75474 233 aaPredicted RBP14.06□□□□□ -0.16
PTCHD1-201ENST00000379361 CREBRFQ8IUR6 639 aa14.06□□□□□ -0.16
PTCHD1-201ENST00000379361 SPAG9O60271 1321 aaKnown RBP14.06□□□□□ -0.16
PTCHD1-201ENST00000379361 TPM2P07951 284 aa14.06□□□□□ -0.16
PTCHD1-201ENST00000379361 CTDP1Q9Y5B0 961 aaPredicted RBP14.06□□□□□ -0.16
PTCHD1-201ENST00000379361 PAK3O75914 559 aaPredicted RBP14.06□□□□□ -0.16
PTCHD1-201ENST00000379361 SRPK2P78362 688 aaKnown RBP14.05□□□□□ -0.16
PTCHD1-201ENST00000379361 TRIM34Q9BYJ4 488 aa14.05□□□□□ -0.16
PTCHD1-201ENST00000379361 CFDP1Q9UEE9 299 aaPredicted RBP14.05□□□□□ -0.16
PTCHD1-201ENST00000379361 TMF1P82094 1093 aa14.04□□□□□ -0.16
PTCHD1-201ENST00000379361 SOX12O15370 315 aa14.04□□□□□ -0.16
PTCHD1-201ENST00000379361 TSR1Q2NL82 804 aaKnown RBP14.04□□□□□ -0.16
PTCHD1-201ENST00000379361 CCDC70Q6NSX1 233 aa14.03□□□□□ -0.16
PTCHD1-201ENST00000379361 CLIP1P30622 1438 aa14.03□□□□□ -0.16
PTCHD1-201ENST00000379361 AMER1Q5JTC6 1135 aaPredicted RBP14.03□□□□□ -0.16
PTCHD1-201ENST00000379361 HDGFL2Q7Z4V5 671 aaPredicted RBP14.03□□□□□ -0.16
PTCHD1-201ENST00000379361 NOL10Q9BSC4 688 aaKnown RBP14.02□□□□□ -0.16
PTCHD1-201ENST00000379361 CWC22Q9HCG8 908 aaKnown RBP14.02□□□□□ -0.16
PTCHD1-201ENST00000379361 CALRP27797 417 aaKnown RBP14.01□□□□□ -0.17
PTCHD1-201ENST00000379361 GTF2E1P29083 439 aaPredicted RBP14.01□□□□□ -0.17
PTCHD1-201ENST00000379361 NOP58Q9Y2X3 529 aaKnown RBP14.01□□□□□ -0.17
PTCHD1-201ENST00000379361 KIF3AQ9Y496 699 aa14□□□□□ -0.17
PTCHD1-201ENST00000379361 RRP12Q5JTH9 1297 aaKnown RBP14□□□□□ -0.17
PTCHD1-201ENST00000379361 AKAP17AQ02040 695 aaKnown RBP14□□□□□ -0.17
PTCHD1-201ENST00000379361 ZCCHC6Q5VYS8 1495 aaKnown RBP14□□□□□ -0.17
PTCHD1-201ENST00000379361 STK31Q9BXU1 1019 aa14□□□□□ -0.17
PTCHD1-201ENST00000379361 FBXO3Q9UK99 471 aa14□□□□□ -0.17
PTCHD1-201ENST00000379361 CC2D1BQ5T0F9 858 aaKnown RBP13.99□□□□□ -0.17
PTCHD1-201ENST00000379361 AMOTL1Q8IY63 956 aa13.99□□□□□ -0.17
PTCHD1-201ENST00000379361 ANO8Q9HCE9 1232 aaPredicted RBP13.99□□□□□ -0.17
PTCHD1-201ENST00000379361 TPM1P09493 284 aa13.98□□□□□ -0.17
PTCHD1-201ENST00000379361 CCDC180Q9P1Z9 1646 aa13.98□□□□□ -0.17
PTCHD1-201ENST00000379361 HIRIP3Q9BW71 556 aaPredicted RBP13.98□□□□□ -0.17
PTCHD1-201ENST00000379361 GOLGA4Q13439 2230 aaKnown RBP13.98□□□□□ -0.17
PTCHD1-201ENST00000379361 TPD52L1Q16890 204 aaPredicted RBP13.98□□□□□ -0.17
PTCHD1-201ENST00000379361 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.98□□□□□ -0.17
PTCHD1-201ENST00000379361 KIF16BQ96L93 1317 aa13.98□□□□□ -0.17
PTCHD1-201ENST00000379361 CHMP4CQ96CF2 233 aa13.98□□□□□ -0.17
PTCHD1-201ENST00000379361 MORC1Q86VD1 984 aa13.97□□□□□ -0.17
PTCHD1-201ENST00000379361 HMMRO75330 724 aa13.97□□□□□ -0.17
PTCHD1-201ENST00000379361 EIF3AQ14152 1382 aaKnown RBP13.97□□□□□ -0.17
PTCHD1-201ENST00000379361 PES1O00541 588 aaKnown RBP13.96□□□□□ -0.17
PTCHD1-201ENST00000379361 TOMM22Q9NS69 142 aa13.95□□□□□ -0.18
PTCHD1-201ENST00000379361 MIER1Q8N108 512 aa13.95□□□□□ -0.18
PTCHD1-201ENST00000379361 DCAF1Q9Y4B6 1507 aa13.95□□□□□ -0.18
PTCHD1-201ENST00000379361 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.95□□□□□ -0.182e-6■■■■■ 96.1
PTCHD1-201ENST00000379361 TRIM6-TRIM34B2RNG4 842 aa13.95□□□□□ -0.18
PTCHD1-201ENST00000379361 PPP4R2Q9NY27 417 aa13.94□□□□□ -0.18
PTCHD1-201ENST00000379361 SPRYD3Q8NCJ5 442 aa13.94□□□□□ -0.18
PTCHD1-201ENST00000379361 MLECQ14165 292 aa13.93□□□□□ -0.18
PTCHD1-201ENST00000379361 RDXP35241 583 aaKnown RBP13.92□□□□□ -0.18
PTCHD1-201ENST00000379361 CCDC43Q96MW1 224 aaKnown RBP13.92□□□□□ -0.18
PTCHD1-201ENST00000379361 RB1CC1Q8TDY2 1594 aa13.92□□□□□ -0.18
PTCHD1-201ENST00000379361 SF3A1Q15459 793 aaKnown RBP13.91□□□□□ -0.18
PTCHD1-201ENST00000379361 APBB1O00213 710 aa13.91□□□□□ -0.18
PTCHD1-201ENST00000379361 LRRFIP1Q32MZ4 808 aaKnown RBP13.91□□□□□ -0.18
PTCHD1-201ENST00000379361 MEX3CQ5U5Q3 659 aaKnown RBP13.91□□□□□ -0.18
PTCHD1-201ENST00000379361 CCNB3Q8WWL7 1395 aa13.91□□□□□ -0.18
PTCHD1-201ENST00000379361 EID1Q9Y6B2 187 aa13.9□□□□□ -0.18
PTCHD1-201ENST00000379361 H3BQV1 296 aa13.9□□□□□ -0.18
PTCHD1-201ENST00000379361 IFFO2Q5TF58 517 aa13.9□□□□□ -0.18
PTCHD1-201ENST00000379361 LMOD3Q0VAK6 560 aa13.9□□□□□ -0.18
PTCHD1-201ENST00000379361 IPO7O95373 1038 aaKnown RBP13.9□□□□□ -0.18
PTCHD1-201ENST00000379361 ITPRIPQ8IWB1 547 aa13.89□□□□□ -0.19
PTCHD1-201ENST00000379361 R3HCC1Q9Y3T6 440 aaKnown RBP13.89□□□□□ -0.19
PTCHD1-201ENST00000379361 SUPT16HQ9Y5B9 1047 aaKnown RBP13.89□□□□□ -0.19
PTCHD1-201ENST00000379361 GPS2Q13227 327 aa13.89□□□□□ -0.19
PTCHD1-201ENST00000379361 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.89□□□□□ -0.19
PTCHD1-201ENST00000379361 EIF4G1Q04637 1599 aaKnown RBP13.89□□□□□ -0.19
PTCHD1-201ENST00000379361 ST18O60284 1047 aa13.89□□□□□ -0.19
PTCHD1-201ENST00000379361 ANKRD20A12PQ8NF67 263 aa13.88□□□□□ -0.19
PTCHD1-201ENST00000379361 RTN4Q9NQC3 1192 aaKnown RBP13.88□□□□□ -0.19
PTCHD1-201ENST00000379361 SYNE3Q6ZMZ3 975 aa13.88□□□□□ -0.19
PTCHD1-201ENST00000379361 GOLGA3Q08378 1498 aa13.88□□□□□ -0.19
PTCHD1-201ENST00000379361 WWC1Q8IX03 1113 aa13.87□□□□□ -0.19
PTCHD1-201ENST00000379361 CCDC47Q96A33 483 aaKnown RBP13.87□□□□□ -0.19
PTCHD1-201ENST00000379361 MYO10Q9HD67 2058 aa13.87□□□□□ -0.19
PTCHD1-201ENST00000379361 ODF2Q5BJF6 829 aa13.87□□□□□ -0.19
PTCHD1-201ENST00000379361 PATL2C9JE40 543 aaKnown RBP13.87□□□□□ -0.19
PTCHD1-201ENST00000379361 WASHC2AQ641Q2 1341 aa13.86□□□□□ -0.19
PTCHD1-201ENST00000379361 HOOK1Q9UJC3 728 aaKnown RBP13.86□□□□□ -0.19
PTCHD1-201ENST00000379361 WWC2Q6AWC2 1192 aa13.85□□□□□ -0.19
PTCHD1-201ENST00000379361 SAFB2Q14151 953 aaKnown RBP eCLIP13.85□□□□□ -0.19
PTCHD1-201ENST00000379361 STK26Q9P289 416 aa13.84□□□□□ -0.19
PTCHD1-201ENST00000379361 CDR1P51861 262 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms