RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 ROCK2O75116 1388 aaKnown RBP17.36■□□□□ 0.37
NPHP4-203ENST00000378169 HSP90AA1P07900 732 aaKnown RBP17.36■□□□□ 0.37
NPHP4-203ENST00000378169 DNAJC5BQ9UF47 199 aa17.33■□□□□ 0.37
NPHP4-203ENST00000378169 STK26Q9P289 416 aa17.33■□□□□ 0.36
NPHP4-203ENST00000378169 PRXQ9BXM0 1461 aa17.32■□□□□ 0.36
NPHP4-203ENST00000378169 U2SURPO15042 1029 aaKnown RBP17.32■□□□□ 0.36
NPHP4-203ENST00000378169 PTPRGP23470 1445 aa17.32■□□□□ 0.36
NPHP4-203ENST00000378169 FRAT1Q92837 279 aaPredicted RBP17.31■□□□□ 0.36
NPHP4-203ENST00000378169 SPAG9O60271 1321 aaKnown RBP17.31■□□□□ 0.36
NPHP4-203ENST00000378169 LRRC9Q6ZRR7 1453 aa17.31■□□□□ 0.36
NPHP4-203ENST00000378169 FGD6Q6ZV73 1430 aa17.3■□□□□ 0.36
NPHP4-203ENST00000378169 ST20-MTHFSA0A0A6YYL1 179 aa17.3■□□□□ 0.36
NPHP4-203ENST00000378169 CUX1P39880 1505 aa17.3■□□□□ 0.36
NPHP4-203ENST00000378169 SRPK2P78362 688 aaKnown RBP17.29■□□□□ 0.36
NPHP4-203ENST00000378169 LAS1LQ9Y4W2 734 aaKnown RBP17.29■□□□□ 0.36
NPHP4-203ENST00000378169 RGS3P49796 1198 aa17.27■□□□□ 0.36
NPHP4-203ENST00000378169 NUTM2DQ5VT03 806 aaPredicted RBP17.27■□□□□ 0.36
NPHP4-203ENST00000378169 RSPH4AQ5TD94 716 aa17.27■□□□□ 0.35
NPHP4-203ENST00000378169 MAPK8IP3Q9UPT6 1336 aa17.25■□□□□ 0.35
NPHP4-203ENST00000378169 MORC1Q86VD1 984 aa17.25■□□□□ 0.35
NPHP4-203ENST00000378169 NUDCQ9Y266 331 aa17.25■□□□□ 0.35
NPHP4-203ENST00000378169 KTN1Q86UP2 1357 aaKnown RBP17.25■□□□□ 0.35
NPHP4-203ENST00000378169 SOX12O15370 315 aa17.24■□□□□ 0.35
NPHP4-203ENST00000378169 MYOM3Q5VTT5 1437 aa17.24■□□□□ 0.35
NPHP4-203ENST00000378169 ERICH3Q5RHP9 1530 aa17.24■□□□□ 0.35
NPHP4-203ENST00000378169 TOP2BQ02880 1626 aa17.24■□□□□ 0.35
NPHP4-203ENST00000378169 ARXQ96QS3 562 aa17.23■□□□□ 0.35
NPHP4-203ENST00000378169 FTSJ3Q8IY81 847 aaKnown RBP17.22■□□□□ 0.35
NPHP4-203ENST00000378169 POLA1P09884 1462 aaPredicted RBP17.21■□□□□ 0.35
NPHP4-203ENST00000378169 CASKIN1Q8WXD9 1431 aa17.21■□□□□ 0.34
NPHP4-203ENST00000378169 MYH16Q9H6N6 1097 aa17.2■□□□□ 0.34
NPHP4-203ENST00000378169 PRKRIP1Q9H875 184 aaPredicted RBP17.2■□□□□ 0.34
NPHP4-203ENST00000378169 CC2D2AQ9P2K1 1620 aa17.19■□□□□ 0.34
NPHP4-203ENST00000378169 LMOD2Q6P5Q4 547 aa17.19■□□□□ 0.34
NPHP4-203ENST00000378169 NCOA2Q15596 1464 aa17.19■□□□□ 0.34
NPHP4-203ENST00000378169 HMGXB3Q12766 1538 aa17.18■□□□□ 0.34
NPHP4-203ENST00000378169 TOPBP1Q92547 1522 aa17.18■□□□□ 0.34
NPHP4-203ENST00000378169 RALBP1Q15311 655 aa17.18■□□□□ 0.34
NPHP4-203ENST00000378169 TRHP20396 242 aaPredicted RBP17.18■□□□□ 0.34
NPHP4-203ENST00000378169 WASHC2CQ9Y4E1 1318 aa17.17■□□□□ 0.34
NPHP4-203ENST00000378169 CCDC144AA2RUR9 1427 aa17.16■□□□□ 0.34
NPHP4-203ENST00000378169 RRBP1Q9P2E9 1410 aaKnown RBP17.16■□□□□ 0.34
NPHP4-203ENST00000378169 TRAK1Q9UPV9 953 aa17.15■□□□□ 0.34
NPHP4-203ENST00000378169 RBM19Q9Y4C8 960 aaKnown RBP17.15■□□□□ 0.34
NPHP4-203ENST00000378169 UACAQ9BZF9 1416 aa17.15■□□□□ 0.34
NPHP4-203ENST00000378169 NLRP13Q86W25 1043 aa17.14■□□□□ 0.33
NPHP4-203ENST00000378169 RCAN3Q9UKA8 241 aa17.14■□□□□ 0.33
NPHP4-203ENST00000378169 USP47Q96K76 1375 aa17.14■□□□□ 0.33
NPHP4-203ENST00000378169 A0A0G2JS52 829 aa17.14■□□□□ 0.33
NPHP4-203ENST00000378169 U2AF1L5P0DN76 240 aaPredicted RBP17.12■□□□□ 0.33
NPHP4-203ENST00000378169 U2AF1Q01081 240 aaKnown RBP eCLIP17.12■□□□□ 0.33
NPHP4-203ENST00000378169 PANK3Q9H999 370 aa17.12■□□□□ 0.33
NPHP4-203ENST00000378169 GRIN2BQ13224 1484 aa17.12■□□□□ 0.33
NPHP4-203ENST00000378169 CYB5RLQ6IPT4 315 aa17.11■□□□□ 0.33
NPHP4-203ENST00000378169 CCDC146Q8IYE0 955 aa17.1■□□□□ 0.33
NPHP4-203ENST00000378169 ANP32EQ9BTT0 268 aa17.1■□□□□ 0.33
NPHP4-203ENST00000378169 KIF15Q9NS87 1388 aa17.1■□□□□ 0.33
NPHP4-203ENST00000378169 FYCO1Q9BQS8 1478 aa17.08■□□□□ 0.32
NPHP4-203ENST00000378169 TSHZ2Q9NRE2 1034 aa17.07■□□□□ 0.32
NPHP4-203ENST00000378169 AFAP1Q8N556 730 aa17.06■□□□□ 0.32
NPHP4-203ENST00000378169 ANKRD50Q9ULJ7 1429 aa17.06■□□□□ 0.32
NPHP4-203ENST00000378169 PRDM2Q13029 1718 aa17.06■□□□□ 0.32
NPHP4-203ENST00000378169 KIF7Q2M1P5 1343 aa17.05■□□□□ 0.32
NPHP4-203ENST00000378169 DDRGK1Q96HY6 314 aa17.05■□□□□ 0.32
NPHP4-203ENST00000378169 WASHC2AQ641Q2 1341 aa17.04■□□□□ 0.32
NPHP4-203ENST00000378169 HDGFL2Q7Z4V5 671 aaPredicted RBP17.04■□□□□ 0.32
NPHP4-203ENST00000378169 NUTM2FA1L443 756 aa17.03■□□□□ 0.32
NPHP4-203ENST00000378169 HDGFP51858 240 aaKnown RBP17.03■□□□□ 0.32
NPHP4-203ENST00000378169 OSCARQ8IYS5 282 aa17.03■□□□□ 0.32
NPHP4-203ENST00000378169 PEG3Q9GZU2 1588 aa17.03■□□□□ 0.32
NPHP4-203ENST00000378169 BECN1Q14457 450 aa17.02■□□□□ 0.32
NPHP4-203ENST00000378169 PRG4Q92954 1404 aaPredicted RBP17.02■□□□□ 0.32
NPHP4-203ENST00000378169 MYBBP1AQ9BQG0 1328 aaKnown RBP17.02■□□□□ 0.31
NPHP4-203ENST00000378169 EIF3AQ14152 1382 aaKnown RBP17.01■□□□□ 0.31
NPHP4-203ENST00000378169 HAP1P54257 671 aaPredicted RBP17.01■□□□□ 0.31
NPHP4-203ENST00000378169 NOP58Q9Y2X3 529 aaKnown RBP17.01■□□□□ 0.31
NPHP4-203ENST00000378169 CCDC7Q96M83 1385 aa17■□□□□ 0.31
NPHP4-203ENST00000378169 GOLGA2Q08379 1002 aa17■□□□□ 0.31
NPHP4-203ENST00000378169 TIAM1Q13009 1591 aa17■□□□□ 0.31
NPHP4-203ENST00000378169 NBPF8Q3BBV2 869 aa16.99■□□□□ 0.31
NPHP4-203ENST00000378169 RRP7AQ9Y3A4 280 aaKnown RBP16.99■□□□□ 0.31
NPHP4-203ENST00000378169 MRC2Q9UBG0 1479 aa16.99■□□□□ 0.31
NPHP4-203ENST00000378169 CLUAP1Q96AJ1 413 aa16.99■□□□□ 0.31
NPHP4-203ENST00000378169 ANP32BQ92688 251 aaKnown RBP16.98■□□□□ 0.31
NPHP4-203ENST00000378169 ERICH6BQ5W0A0 696 aa16.98■□□□□ 0.31
NPHP4-203ENST00000378169 PNNQ9H307 717 aaKnown RBP16.97■□□□□ 0.31
NPHP4-203ENST00000378169 PLIN1O60240 522 aa16.97■□□□□ 0.31
NPHP4-203ENST00000378169 DNMBPQ6XZF7 1577 aa16.97■□□□□ 0.31
NPHP4-203ENST00000378169 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.97■□□□□ 0.31
NPHP4-203ENST00000378169 EFCAB5A4FU69 1503 aa16.96■□□□□ 0.31
NPHP4-203ENST00000378169 SNAPC4Q5SXM2 1469 aa16.95■□□□□ 0.3
NPHP4-203ENST00000378169 ABCA10Q8WWZ4 1543 aa16.94■□□□□ 0.3
NPHP4-203ENST00000378169 EIF5BO60841 1220 aaKnown RBP16.94■□□□□ 0.3
NPHP4-203ENST00000378169 ZBED9Q6R2W3 1325 aa16.94■□□□□ 0.3
NPHP4-203ENST00000378169 PAK3O75914 559 aaPredicted RBP16.94■□□□□ 0.3
NPHP4-203ENST00000378169 TERF2IPQ9NYB0 399 aa16.94■□□□□ 0.3
NPHP4-203ENST00000378169 MS4A1P11836 297 aa16.94■□□□□ 0.3
NPHP4-203ENST00000378169 HFM1A2PYH4 1435 aa16.94■□□□□ 0.3
NPHP4-203ENST00000378169 NBPF1Q3BBV0 1214 aa16.93■□□□□ 0.3
NPHP4-203ENST00000378169 IFT140Q96RY7 1462 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms