RNA–Protein interactions for RNA: ENST00000371122.8

SMARCA1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCA1, Length 4,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-202ENST00000371122 NPM1P06748 294 aaKnown RBP eCLIP12.21□□□□□ -0.46
SMARCA1-202ENST00000371122 WDR43Q15061 677 aaKnown RBP eCLIP12.21□□□□□ -0.462e-6■■■■■ 28
SMARCA1-202ENST00000371122 KIAA0556O60303 1618 aa12.21□□□□□ -0.46
SMARCA1-202ENST00000371122 RIMBP3CA6NJZ7 1639 aa12.2□□□□□ -0.46
SMARCA1-202ENST00000371122 RIMBP3BA6NNM3 1639 aa12.2□□□□□ -0.46
SMARCA1-202ENST00000371122 RIMBP3Q9UFD9 1639 aa12.2□□□□□ -0.46
SMARCA1-202ENST00000371122 CC2D1BQ5T0F9 858 aaKnown RBP12.2□□□□□ -0.46
SMARCA1-202ENST00000371122 EFCAB5A4FU69 1503 aa12.19□□□□□ -0.46
SMARCA1-202ENST00000371122 ESF1Q9H501 851 aaKnown RBP12.18□□□□□ -0.46
SMARCA1-202ENST00000371122 PPM1GO15355 546 aaPredicted RBP12.18□□□□□ -0.46
SMARCA1-202ENST00000371122 ERCC6L2Q5T890 1561 aa12.18□□□□□ -0.46
SMARCA1-202ENST00000371122 EIF5BO60841 1220 aaKnown RBP12.17□□□□□ -0.46
SMARCA1-202ENST00000371122 DCAF11Q8TEB1 546 aa12.17□□□□□ -0.46
SMARCA1-202ENST00000371122 ARHGEF11O15085 1522 aa12.16□□□□□ -0.46
SMARCA1-202ENST00000371122 HSPA5P11021 654 aaKnown RBP12.14□□□□□ -0.47
SMARCA1-202ENST00000371122 OSCARQ8IYS5 282 aa12.14□□□□□ -0.47
SMARCA1-202ENST00000371122 SAFB2Q14151 953 aaKnown RBP eCLIP12.14□□□□□ -0.47
SMARCA1-202ENST00000371122 RAB3GAP2Q9H2M9 1393 aa12.13□□□□□ -0.47
SMARCA1-202ENST00000371122 ZBTB7CA1YPR0 619 aa12.13□□□□□ -0.47
SMARCA1-202ENST00000371122 VPS8Q8N3P4 1428 aa12.13□□□□□ -0.47
SMARCA1-202ENST00000371122 HSP90AA1P07900 732 aaKnown RBP12.11□□□□□ -0.47
SMARCA1-202ENST00000371122 RGS3P49796 1198 aa12.11□□□□□ -0.47
SMARCA1-202ENST00000371122 ABCA8O94911 1581 aa12.11□□□□□ -0.47
SMARCA1-202ENST00000371122 LAS1LQ9Y4W2 734 aaKnown RBP12.1□□□□□ -0.47
SMARCA1-202ENST00000371122 UHRF1BP1LA0JNW5 1464 aa12.1□□□□□ -0.47
SMARCA1-202ENST00000371122 ARAP1Q96P48 1450 aa12.1□□□□□ -0.47
SMARCA1-202ENST00000371122 ARHGAP35Q9NRY4 1499 aa12.08□□□□□ -0.47
SMARCA1-202ENST00000371122 PKD2Q13563 968 aa12.08□□□□□ -0.48
SMARCA1-202ENST00000371122 DNAJC5Q9H3Z4 198 aa12.08□□□□□ -0.48
SMARCA1-202ENST00000371122 LRRIQ1Q96JM4 1722 aa12.07□□□□□ -0.48
SMARCA1-202ENST00000371122 FRAT1Q92837 279 aaPredicted RBP12.07□□□□□ -0.48
SMARCA1-202ENST00000371122 RTN4Q9NQC3 1192 aaKnown RBP12.07□□□□□ -0.48
SMARCA1-202ENST00000371122 C14orf37Q86TY3 774 aa12.06□□□□□ -0.48
SMARCA1-202ENST00000371122 KNSTRNQ9Y448 316 aa12.06□□□□□ -0.48
SMARCA1-202ENST00000371122 ADCY10Q96PN6 1610 aa12.06□□□□□ -0.48
SMARCA1-202ENST00000371122 PRG4Q92954 1404 aaPredicted RBP12.06□□□□□ -0.48
SMARCA1-202ENST00000371122 SOX12O15370 315 aa12.06□□□□□ -0.48
SMARCA1-202ENST00000371122 L3MBTL2Q969R5 705 aa12.05□□□□□ -0.48
SMARCA1-202ENST00000371122 FHOD3Q2V2M9 1422 aa12.05□□□□□ -0.48
SMARCA1-202ENST00000371122 MLECQ14165 292 aa12.05□□□□□ -0.48
SMARCA1-202ENST00000371122 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.05□□□□□ -0.48
SMARCA1-202ENST00000371122 SETD5Q9C0A6 1442 aa12.04□□□□□ -0.48
SMARCA1-202ENST00000371122 PPP1R15AO75807 674 aaPredicted RBP12.04□□□□□ -0.48
SMARCA1-202ENST00000371122 TPRNQ4KMQ1 711 aa12.04□□□□□ -0.48
SMARCA1-202ENST00000371122 MPHOSPH9Q99550 1183 aa12.03□□□□□ -0.48
SMARCA1-202ENST00000371122 JPH4Q96JJ6 628 aa12.03□□□□□ -0.48
SMARCA1-202ENST00000371122 RBM19Q9Y4C8 960 aaKnown RBP12.03□□□□□ -0.48
SMARCA1-202ENST00000371122 NUTM2DQ5VT03 806 aaPredicted RBP12.02□□□□□ -0.49
SMARCA1-202ENST00000371122 A0A0G2JS52 829 aa12.02□□□□□ -0.49
SMARCA1-202ENST00000371122 ANP32EQ9BTT0 268 aa12.01□□□□□ -0.49
SMARCA1-202ENST00000371122 RAPGEF6Q8TEU7 1601 aa12.01□□□□□ -0.49
SMARCA1-202ENST00000371122 ABCC2Q92887 1545 aa12.01□□□□□ -0.49
SMARCA1-202ENST00000371122 UPF2Q9HAU5 1272 aaKnown RBP12.01□□□□□ -0.49
SMARCA1-202ENST00000371122 GGT6Q6P531 493 aa12□□□□□ -0.49
SMARCA1-202ENST00000371122 HNRNPMP52272 730 aaKnown RBP eCLIP12□□□□□ -0.492e-6■■■■□ 21.2
SMARCA1-202ENST00000371122 CARMIL2Q6F5E8 1435 aa12□□□□□ -0.49
SMARCA1-202ENST00000371122 KDM5BQ9UGL1 1544 aa11.99□□□□□ -0.49
SMARCA1-202ENST00000371122 U2SURPO15042 1029 aaKnown RBP11.99□□□□□ -0.49
SMARCA1-202ENST00000371122 PPP4R2Q9NY27 417 aa11.99□□□□□ -0.49
SMARCA1-202ENST00000371122 STK26Q9P289 416 aa11.99□□□□□ -0.49
SMARCA1-202ENST00000371122 MAPKBP1O60336 1514 aa11.98□□□□□ -0.49
SMARCA1-202ENST00000371122 TSHZ2Q9NRE2 1034 aa11.98□□□□□ -0.49
SMARCA1-202ENST00000371122 ARID4BQ4LE39 1312 aaPredicted RBP11.97□□□□□ -0.49
SMARCA1-202ENST00000371122 DHX57Q6P158 1386 aaKnown RBP11.97□□□□□ -0.49
SMARCA1-202ENST00000371122 CFAP43Q8NDM7 1665 aa11.96□□□□□ -0.49
SMARCA1-202ENST00000371122 ZCCHC11Q5TAX3 1644 aaKnown RBP11.96□□□□□ -0.49
SMARCA1-202ENST00000371122 MAP3K1Q13233 1512 aa11.95□□□□□ -0.5
SMARCA1-202ENST00000371122 PCF11O94913 1555 aaKnown RBP11.95□□□□□ -0.5
SMARCA1-202ENST00000371122 SPRYD3Q8NCJ5 442 aa11.95□□□□□ -0.5
SMARCA1-202ENST00000371122 HECW1Q76N89 1606 aa11.94□□□□□ -0.5
SMARCA1-202ENST00000371122 FYCO1Q9BQS8 1478 aa11.94□□□□□ -0.5
SMARCA1-202ENST00000371122 LMOD2Q6P5Q4 547 aa11.94□□□□□ -0.5
SMARCA1-202ENST00000371122 NUP155O75694 1391 aa11.93□□□□□ -0.5
SMARCA1-202ENST00000371122 NUP153P49790 1475 aaKnown RBP11.93□□□□□ -0.5
SMARCA1-202ENST00000371122 ZNF644Q9H582 1327 aaPredicted RBP11.93□□□□□ -0.5
SMARCA1-202ENST00000371122 CASKIN1Q8WXD9 1431 aa11.93□□□□□ -0.5
SMARCA1-202ENST00000371122 UACAQ9BZF9 1416 aa11.93□□□□□ -0.5
SMARCA1-202ENST00000371122 POGKQ9P215 609 aa11.92□□□□□ -0.5
SMARCA1-202ENST00000371122 FMN1Q68DA7 1419 aa11.91□□□□□ -0.5
SMARCA1-202ENST00000371122 GLI2P10070 1586 aa11.91□□□□□ -0.5
SMARCA1-202ENST00000371122 CCDC146Q8IYE0 955 aa11.91□□□□□ -0.5
SMARCA1-202ENST00000371122 PTPRGP23470 1445 aa11.9□□□□□ -0.5
SMARCA1-202ENST00000371122 PLB1Q6P1J6 1458 aa11.9□□□□□ -0.5
SMARCA1-202ENST00000371122 ST20-MTHFSA0A0A6YYL1 179 aa11.89□□□□□ -0.51
SMARCA1-202ENST00000371122 KIF13AQ9H1H9 1805 aa11.89□□□□□ -0.51
SMARCA1-202ENST00000371122 PLIN1O60240 522 aa11.89□□□□□ -0.51
SMARCA1-202ENST00000371122 FTSJ3Q8IY81 847 aaKnown RBP11.89□□□□□ -0.51
SMARCA1-202ENST00000371122 TAOK2Q9UL54 1235 aa11.89□□□□□ -0.51
SMARCA1-202ENST00000371122 NUTM2FA1L443 756 aa11.88□□□□□ -0.51
SMARCA1-202ENST00000371122 CCER2I3L3R5 266 aa11.88□□□□□ -0.51
SMARCA1-202ENST00000371122 SRPK2P78362 688 aaKnown RBP11.88□□□□□ -0.51
SMARCA1-202ENST00000371122 APBB1O00213 710 aa11.87□□□□□ -0.51
SMARCA1-202ENST00000371122 TMF1P82094 1093 aa11.87□□□□□ -0.51
SMARCA1-202ENST00000371122 CLUAP1Q96AJ1 413 aa11.87□□□□□ -0.51
SMARCA1-202ENST00000371122 ATP10BO94823 1461 aa11.86□□□□□ -0.51
SMARCA1-202ENST00000371122 CCDC18Q5T9S5 1454 aa11.86□□□□□ -0.51
SMARCA1-202ENST00000371122 NOP58Q9Y2X3 529 aaKnown RBP11.86□□□□□ -0.51
SMARCA1-202ENST00000371122 MAP3K4Q9Y6R4 1608 aa11.86□□□□□ -0.51
SMARCA1-202ENST00000371122 EPRSP07814 1512 aaKnown RBP11.85□□□□□ -0.51
SMARCA1-202ENST00000371122 KIF3BO15066 747 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms