RNA–Protein interactions for RNA: ENST00000368533.7

TPM3-212, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 3,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-212ENST00000368533 FOXD1Q16676 465 aa15.45■□□□□ 0.06
TPM3-212ENST00000368533 GPATCH8Q9UKJ3 1502 aaKnown RBP15.44■□□□□ 0.06
TPM3-212ENST00000368533 NAIPQ13075 1403 aa15.41■□□□□ 0.06
TPM3-212ENST00000368533 CAMSAP2Q08AD1 1489 aa15.4■□□□□ 0.06
TPM3-212ENST00000368533 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.4■□□□□ 0.063e-7■■□□□ 11.8
TPM3-212ENST00000368533 MIA2Q96PC5 1412 aa15.39■□□□□ 0.05
TPM3-212ENST00000368533 ABCC2Q92887 1545 aa15.39■□□□□ 0.05
TPM3-212ENST00000368533 ABCC5O15440 1437 aa15.39■□□□□ 0.05
TPM3-212ENST00000368533 DAPK1P53355 1430 aa15.39■□□□□ 0.05
TPM3-212ENST00000368533 KDM6BO15054 1643 aa15.38■□□□□ 0.05
TPM3-212ENST00000368533 CYB5RLQ6IPT4 315 aa15.38■□□□□ 0.05
TPM3-212ENST00000368533 TCOF1Q13428 1488 aaKnown RBP15.37■□□□□ 0.05
TPM3-212ENST00000368533 HFM1A2PYH4 1435 aa15.37■□□□□ 0.05
TPM3-212ENST00000368533 MAPKBP1O60336 1514 aa15.36■□□□□ 0.05
TPM3-212ENST00000368533 ABCC10Q5T3U5 1492 aa15.35■□□□□ 0.05
TPM3-212ENST00000368533 CDC42BPAQ5VT25 1732 aa15.34■□□□□ 0.05
TPM3-212ENST00000368533 MIER1Q8N108 512 aa15.34■□□□□ 0.05
TPM3-212ENST00000368533 ZCCHC11Q5TAX3 1644 aaKnown RBP15.33■□□□□ 0.05
TPM3-212ENST00000368533 TTC37Q6PGP7 1564 aa15.33■□□□□ 0.04
TPM3-212ENST00000368533 PHF23Q9BUL5 403 aaPredicted RBP15.32■□□□□ 0.04
TPM3-212ENST00000368533 TSPY4P0CV99 314 aa15.32■□□□□ 0.04
TPM3-212ENST00000368533 TSPY10P0CW01 314 aa15.32■□□□□ 0.04
TPM3-212ENST00000368533 MYT1LQ9UL68 1186 aa15.32■□□□□ 0.04
TPM3-212ENST00000368533 ARHGAP5Q13017 1502 aa15.32■□□□□ 0.04
TPM3-212ENST00000368533 NPM1P06748 294 aaKnown RBP eCLIP15.31■□□□□ 0.04
TPM3-212ENST00000368533 ADCY10Q96PN6 1610 aa15.31■□□□□ 0.04
TPM3-212ENST00000368533 HIRIP3Q9BW71 556 aaPredicted RBP15.31■□□□□ 0.04
TPM3-212ENST00000368533 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.3■□□□□ 0.043e-7■□□□□ 8.5
TPM3-212ENST00000368533 ITSN2Q9NZM3 1697 aa15.3■□□□□ 0.04
TPM3-212ENST00000368533 DNMT1P26358 1616 aaKnown RBP15.28■□□□□ 0.04
TPM3-212ENST00000368533 MPHOSPH9Q99550 1183 aa15.28■□□□□ 0.04
TPM3-212ENST00000368533 SLC4A1APQ9BWU0 796 aaKnown RBP15.28■□□□□ 0.04
TPM3-212ENST00000368533 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.28■□□□□ 0.044e-9■■■■■ 28.1
TPM3-212ENST00000368533 KDM5BQ9UGL1 1544 aa15.26■□□□□ 0.03
TPM3-212ENST00000368533 CLSPNQ9HAW4 1339 aa15.26■□□□□ 0.03
TPM3-212ENST00000368533 CDC42BPBQ9Y5S2 1711 aa15.26■□□□□ 0.03
TPM3-212ENST00000368533 AFAP1Q8N556 730 aa15.26■□□□□ 0.03
TPM3-212ENST00000368533 AKNAQ7Z591 1439 aa15.25■□□□□ 0.03
TPM3-212ENST00000368533 SYCP2Q9BX26 1530 aa15.25■□□□□ 0.03
TPM3-212ENST00000368533 NCOA1Q15788 1441 aa15.24■□□□□ 0.03
TPM3-212ENST00000368533 C9orf84Q5VXU9 1444 aa15.24■□□□□ 0.03
TPM3-212ENST00000368533 SAMD9LQ8IVG5 1584 aa15.24■□□□□ 0.03
TPM3-212ENST00000368533 ANP32EQ9BTT0 268 aa15.24■□□□□ 0.03
TPM3-212ENST00000368533 ASXL2Q76L83 1435 aa15.23■□□□□ 0.03
TPM3-212ENST00000368533 ANKRD30AQ9BXX3 1397 aa15.23■□□□□ 0.03
TPM3-212ENST00000368533 EFCAB2Q5VUJ9 269 aa15.22■□□□□ 0.03
TPM3-212ENST00000368533 UHRF1BP1LA0JNW5 1464 aa15.21■□□□□ 0.03
TPM3-212ENST00000368533 TONSLQ96HA7 1378 aa15.21■□□□□ 0.02
TPM3-212ENST00000368533 KIF15Q9NS87 1388 aa15.21■□□□□ 0.02
TPM3-212ENST00000368533 WDR7Q9Y4E6 1490 aa15.2■□□□□ 0.02
TPM3-212ENST00000368533 PREX2Q70Z35 1606 aa15.2■□□□□ 0.02
TPM3-212ENST00000368533 GCC2Q8IWJ2 1684 aa15.2■□□□□ 0.02
TPM3-212ENST00000368533 MBD5Q9P267 1494 aa15.19■□□□□ 0.02
TPM3-212ENST00000368533 DENND4BO75064 1496 aaPredicted RBP15.19■□□□□ 0.02
TPM3-212ENST00000368533 ANKRD50Q9ULJ7 1429 aa15.19■□□□□ 0.02
TPM3-212ENST00000368533 ARHGEF12Q9NZN5 1544 aa15.19■□□□□ 0.02
TPM3-212ENST00000368533 ROCK1Q13464 1354 aa15.19■□□□□ 0.02
TPM3-212ENST00000368533 PKD2Q13563 968 aa15.18■□□□□ 0.02
TPM3-212ENST00000368533 MYO5CQ9NQX4 1742 aa15.17■□□□□ 0.02
TPM3-212ENST00000368533 NUP155O75694 1391 aa15.17■□□□□ 0.02
TPM3-212ENST00000368533 TRAPPC8Q9Y2L5 1435 aa15.17■□□□□ 0.02
TPM3-212ENST00000368533 PLCH2O75038 1416 aa15.16■□□□□ 0.02
TPM3-212ENST00000368533 CCDC141Q6ZP82 1450 aa15.16■□□□□ 0.02
TPM3-212ENST00000368533 ZNF326Q5BKZ1 582 aaKnown RBP15.16■□□□□ 0.02
TPM3-212ENST00000368533 CROCC2H7BZ55 1655 aa15.14■□□□□ 0.01
TPM3-212ENST00000368533 TSHZ2Q9NRE2 1034 aa15.12■□□□□ 0.01
TPM3-212ENST00000368533 PPP1R15AO75807 674 aaPredicted RBP15.12■□□□□ 0.01
TPM3-212ENST00000368533 FANCAO15360 1455 aa15.12■□□□□ 0.01
TPM3-212ENST00000368533 SPAG9O60271 1321 aaKnown RBP15.12■□□□□ 0.01
TPM3-212ENST00000368533 ADGBQ8N7X0 1667 aa15.11■□□□□ 0.01
TPM3-212ENST00000368533 L3MBTL2Q969R5 705 aa15.1■□□□□ 0.01
TPM3-212ENST00000368533 PRKCSHP14314 528 aaPredicted RBP15.1■□□□□ 0.01
TPM3-212ENST00000368533 SUPT16HQ9Y5B9 1047 aaKnown RBP15.1■□□□□ 0.01
TPM3-212ENST00000368533 SCAPERQ9BY12 1400 aa15.09■□□□□ 0.01
TPM3-212ENST00000368533 RIMBP3CA6NJZ7 1639 aa15.09■□□□□ 0.01
TPM3-212ENST00000368533 RIMBP3BA6NNM3 1639 aa15.09■□□□□ 0.01
TPM3-212ENST00000368533 RIMBP3Q9UFD9 1639 aa15.09■□□□□ 0.01
TPM3-212ENST00000368533 RAPGEF3O95398 923 aa15.09■□□□□ 0.01
TPM3-212ENST00000368533 ADGRL2O95490 1459 aa15.09■□□□□ 0.01
TPM3-212ENST00000368533 PZPP20742 1482 aa15.09■□□□□ 0.01
TPM3-212ENST00000368533 PLEKHH2Q8IVE3 1493 aa15.09■□□□□ 0.01
TPM3-212ENST00000368533 CD109Q6YHK3 1445 aa15.07■□□□□ 0
TPM3-212ENST00000368533 FAM69CQ0P6D2 419 aa15.07■□□□□ 0
TPM3-212ENST00000368533 RSPH4AQ5TD94 716 aa15.07■□□□□ 0
TPM3-212ENST00000368533 KDM2AQ9Y2K7 1162 aa15.07■□□□□ 0
TPM3-212ENST00000368533 ADGRL1O94910 1474 aa15.07■□□□□ 0
TPM3-212ENST00000368533 ARHGEF5Q12774 1597 aa15.06■□□□□ 0
TPM3-212ENST00000368533 SHANK2Q9UPX8 1470 aa15.05■□□□□ 0
TPM3-212ENST00000368533 RGL3Q3MIN7 710 aa15.05■□□□□ -0
TPM3-212ENST00000368533 ANKRD30BQ9BXX2 1392 aa15.05■□□□□ -0
TPM3-212ENST00000368533 ABCC1P33527 1531 aa15.05■□□□□ -0
TPM3-212ENST00000368533 KIF3BO15066 747 aa15.03■□□□□ -0
TPM3-212ENST00000368533 KIAA1107Q9UPP5 1409 aa15.03■□□□□ -0
TPM3-212ENST00000368533 DDX10Q13206 875 aaKnown RBP15.02□□□□□ -0.01
TPM3-212ENST00000368533 ABCA9Q8IUA7 1624 aa15.01□□□□□ -0.01
TPM3-212ENST00000368533 NBPF8Q3BBV2 869 aa15.01□□□□□ -0.01
TPM3-212ENST00000368533 GGT6Q6P531 493 aa14.99□□□□□ -0.01
TPM3-212ENST00000368533 BCANQ96GW7 911 aa14.98□□□□□ -0.01
TPM3-212ENST00000368533 TSPOAP1O95153 1857 aa14.97□□□□□ -0.01
TPM3-212ENST00000368533 SENP3Q9H4L4 574 aaPredicted RBP14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 165.3 ms