RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 RSPH4AQ5TD94 716 aa11.62□□□□□ -0.55
SYNE1-205ENST00000367251 KRI1Q8N9T8 703 aaKnown RBP11.62□□□□□ -0.55
SYNE1-205ENST00000367251 CFAP44Q96MT7 982 aa11.62□□□□□ -0.55
SYNE1-205ENST00000367251 PKD2Q13563 968 aa11.61□□□□□ -0.55
SYNE1-205ENST00000367251 TRIM44Q96DX7 344 aaPredicted RBP11.61□□□□□ -0.55
SYNE1-205ENST00000367251 PRM3Q9NNZ6 103 aa11.61□□□□□ -0.55
SYNE1-205ENST00000367251 CC2D1BQ5T0F9 858 aaKnown RBP11.59□□□□□ -0.55
SYNE1-205ENST00000367251 EIF3AQ14152 1382 aaKnown RBP11.58□□□□□ -0.56
SYNE1-205ENST00000367251 FHOD3Q2V2M9 1422 aa11.58□□□□□ -0.56
SYNE1-205ENST00000367251 PDE3BQ13370 1112 aa11.57□□□□□ -0.56
SYNE1-205ENST00000367251 KIF21BO75037 1637 aa11.57□□□□□ -0.56
SYNE1-205ENST00000367251 PHLDB1Q86UU1 1377 aa11.57□□□□□ -0.56
SYNE1-205ENST00000367251 B4GALNT3Q6L9W6 998 aa11.57□□□□□ -0.56
SYNE1-205ENST00000367251 RBM19Q9Y4C8 960 aaKnown RBP11.57□□□□□ -0.56
SYNE1-205ENST00000367251 POGKQ9P215 609 aa11.57□□□□□ -0.56
SYNE1-205ENST00000367251 TCERG1O14776 1098 aaKnown RBP11.56□□□□□ -0.56
SYNE1-205ENST00000367251 NUP155O75694 1391 aa11.56□□□□□ -0.56
SYNE1-205ENST00000367251 TDRD9Q8NDG6 1382 aaKnown RBP11.55□□□□□ -0.56
SYNE1-205ENST00000367251 HDGFP51858 240 aaKnown RBP11.55□□□□□ -0.56
SYNE1-205ENST00000367251 TMX4Q9H1E5 349 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-205ENST00000367251 RUSC2Q8N2Y8 1516 aa11.54□□□□□ -0.56
SYNE1-205ENST00000367251 CUX1P39880 1505 aa11.54□□□□□ -0.56
SYNE1-205ENST00000367251 AEBP2Q6ZN18 517 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-205ENST00000367251 ERICH3Q5RHP9 1530 aa11.53□□□□□ -0.56
SYNE1-205ENST00000367251 RCAN3Q9UKA8 241 aa11.53□□□□□ -0.56
SYNE1-205ENST00000367251 EFCAB2Q5VUJ9 269 aa11.52□□□□□ -0.56
SYNE1-205ENST00000367251 MORC1Q86VD1 984 aa11.52□□□□□ -0.56
SYNE1-205ENST00000367251 CCDC9Q9Y3X0 531 aaKnown RBP11.52□□□□□ -0.57
SYNE1-205ENST00000367251 FANCD2Q9BXW9 1451 aa11.52□□□□□ -0.57
SYNE1-205ENST00000367251 FRAT1Q92837 279 aaPredicted RBP11.52□□□□□ -0.57
SYNE1-205ENST00000367251 RGS3P49796 1198 aa11.52□□□□□ -0.57
SYNE1-205ENST00000367251 KIF15Q9NS87 1388 aa11.51□□□□□ -0.57
SYNE1-205ENST00000367251 PTMSP20962 102 aa11.51□□□□□ -0.57
SYNE1-205ENST00000367251 L3MBTL2Q969R5 705 aa11.51□□□□□ -0.57
SYNE1-205ENST00000367251 L1TD1Q5T7N2 865 aaKnown RBP11.51□□□□□ -0.57
SYNE1-205ENST00000367251 CALD1Q05682 793 aaKnown RBP11.5□□□□□ -0.57
SYNE1-205ENST00000367251 NEUROD2Q15784 382 aa11.5□□□□□ -0.57
SYNE1-205ENST00000367251 TPRNQ4KMQ1 711 aa11.5□□□□□ -0.57
SYNE1-205ENST00000367251 IPO8O15397 1037 aaKnown RBP11.5□□□□□ -0.57
SYNE1-205ENST00000367251 NLRP13Q86W25 1043 aa11.49□□□□□ -0.57
SYNE1-205ENST00000367251 HSCBQ8IWL3 235 aa11.49□□□□□ -0.57
SYNE1-205ENST00000367251 FGD1P98174 961 aa11.48□□□□□ -0.57
SYNE1-205ENST00000367251 LAS1LQ9Y4W2 734 aaKnown RBP11.48□□□□□ -0.57
SYNE1-205ENST00000367251 HSP90AB1P08238 724 aaKnown RBP11.48□□□□□ -0.57
SYNE1-205ENST00000367251 U2SURPO15042 1029 aaKnown RBP11.47□□□□□ -0.57
SYNE1-205ENST00000367251 TSHZ2Q9NRE2 1034 aa11.47□□□□□ -0.57
SYNE1-205ENST00000367251 NCAPD3P42695 1498 aa11.47□□□□□ -0.57
SYNE1-205ENST00000367251 NAP1L2Q9ULW6 460 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-205ENST00000367251 MYBBP1AQ9BQG0 1328 aaKnown RBP11.46□□□□□ -0.57
SYNE1-205ENST00000367251 FOXD1Q16676 465 aa11.46□□□□□ -0.57
SYNE1-205ENST00000367251 HDGFL2Q7Z4V5 671 aaPredicted RBP11.46□□□□□ -0.57
SYNE1-205ENST00000367251 RWDD1Q9H446 243 aaPredicted RBP11.46□□□□□ -0.57
SYNE1-205ENST00000367251 IGF1RP08069 1367 aa11.46□□□□□ -0.57
SYNE1-205ENST00000367251 DCAF8L1A6NGE4 600 aa11.46□□□□□ -0.58
SYNE1-205ENST00000367251 PMFBP1Q8TBY8 1022 aa11.46□□□□□ -0.58
SYNE1-205ENST00000367251 UACAQ9BZF9 1416 aa11.45□□□□□ -0.58
SYNE1-205ENST00000367251 OS9Q13438 667 aaPredicted RBP11.45□□□□□ -0.58
SYNE1-205ENST00000367251 FGD5Q6ZNL6 1462 aa11.45□□□□□ -0.58
SYNE1-205ENST00000367251 MLECQ14165 292 aa11.44□□□□□ -0.58
SYNE1-205ENST00000367251 PTMAP06454 111 aaKnown RBP11.44□□□□□ -0.58
SYNE1-205ENST00000367251 ZBED9Q6R2W3 1325 aa11.44□□□□□ -0.58
SYNE1-205ENST00000367251 MCCP23508 829 aa11.43□□□□□ -0.58
SYNE1-205ENST00000367251 SRPK2P78362 688 aaKnown RBP11.43□□□□□ -0.58
SYNE1-205ENST00000367251 LRRC9Q6ZRR7 1453 aa11.43□□□□□ -0.58
SYNE1-205ENST00000367251 MYOM3Q5VTT5 1437 aa11.43□□□□□ -0.58
SYNE1-205ENST00000367251 FGD6Q6ZV73 1430 aa11.43□□□□□ -0.58
SYNE1-205ENST00000367251 TNNT2P45379 298 aaPredicted RBP11.43□□□□□ -0.58
SYNE1-205ENST00000367251 CASKIN1Q8WXD9 1431 aa11.43□□□□□ -0.58
SYNE1-205ENST00000367251 CHMP4AQ9BY43 222 aa11.42□□□□□ -0.58
SYNE1-205ENST00000367251 RRBP1Q9P2E9 1410 aaKnown RBP11.42□□□□□ -0.58
SYNE1-205ENST00000367251 CCDC144AA2RUR9 1427 aa11.42□□□□□ -0.58
SYNE1-205ENST00000367251 SENP3-EIF4A1A0A087X0R7 540 aa11.42□□□□□ -0.58
SYNE1-205ENST00000367251 IPO9Q96P70 1041 aaKnown RBP11.42□□□□□ -0.58
SYNE1-205ENST00000367251 G3V3G9 751 aa11.42□□□□□ -0.58
SYNE1-205ENST00000367251 DEKP35659 375 aaKnown RBP11.42□□□□□ -0.58
SYNE1-205ENST00000367251 DCAF8Q5TAQ9 597 aa11.42□□□□□ -0.58
SYNE1-205ENST00000367251 FYCO1Q9BQS8 1478 aa11.41□□□□□ -0.58
SYNE1-205ENST00000367251 NGEFQ8N5V2 710 aa11.41□□□□□ -0.58
SYNE1-205ENST00000367251 GAPVD1Q14C86 1478 aa11.41□□□□□ -0.58
SYNE1-205ENST00000367251 ZNF330Q9Y3S2 320 aaPredicted RBP11.4□□□□□ -0.58
SYNE1-205ENST00000367251 STAC3Q96MF2 364 aa11.4□□□□□ -0.58
SYNE1-205ENST00000367251 SOX12O15370 315 aa11.4□□□□□ -0.58
SYNE1-205ENST00000367251 PRKRIP1Q9H875 184 aaPredicted RBP11.4□□□□□ -0.58
SYNE1-205ENST00000367251 EFCAB5A4FU69 1503 aa11.4□□□□□ -0.58
SYNE1-205ENST00000367251 KCNJ4P48050 445 aa11.4□□□□□ -0.58
SYNE1-205ENST00000367251 GOLGA6L6A8MZA4 724 aa11.39□□□□□ -0.59
SYNE1-205ENST00000367251 SPAG9O60271 1321 aaKnown RBP11.39□□□□□ -0.59
SYNE1-205ENST00000367251 PHF23Q9BUL5 403 aaPredicted RBP11.39□□□□□ -0.59
SYNE1-205ENST00000367251 JPH4Q96JJ6 628 aa11.38□□□□□ -0.59
SYNE1-205ENST00000367251 GBP4Q96PP9 640 aa11.38□□□□□ -0.59
SYNE1-205ENST00000367251 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.38□□□□□ -0.59
SYNE1-205ENST00000367251 HNRNPMP52272 730 aaKnown RBP eCLIP11.38□□□□□ -0.59
SYNE1-205ENST00000367251 TERF2IPQ9NYB0 399 aa11.38□□□□□ -0.59
SYNE1-205ENST00000367251 USP47Q96K76 1375 aa11.37□□□□□ -0.59
SYNE1-205ENST00000367251 USP35Q9P2H5 1018 aa11.37□□□□□ -0.59
SYNE1-205ENST00000367251 CSB-PGBD3P0DP91 1061 aa11.37□□□□□ -0.59
SYNE1-205ENST00000367251 MIA2Q96PC5 1412 aa11.37□□□□□ -0.59
SYNE1-205ENST00000367251 TOP2BQ02880 1626 aa11.37□□□□□ -0.59
SYNE1-205ENST00000367251 RTF1Q92541 710 aaKnown RBP11.36□□□□□ -0.59
SYNE1-205ENST00000367251 U2AF1L5P0DN76 240 aaPredicted RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms