RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 HNRNPMP52272 730 aaKnown RBP eCLIP15.22■□□□□ 0.03
SYNE1-204ENST00000367248 SPAG9O60271 1321 aaKnown RBP15.22■□□□□ 0.03
SYNE1-204ENST00000367248 FOXD1Q16676 465 aa15.22■□□□□ 0.03
SYNE1-204ENST00000367248 MPHOSPH9Q99550 1183 aa15.22■□□□□ 0.03
SYNE1-204ENST00000367248 OSCARQ8IYS5 282 aa15.22■□□□□ 0.03
SYNE1-204ENST00000367248 RAB3GAP2Q9H2M9 1393 aa15.19■□□□□ 0.02
SYNE1-204ENST00000367248 IGF1RP08069 1367 aa15.19■□□□□ 0.02
SYNE1-204ENST00000367248 CCDC18Q5T9S5 1454 aa15.18■□□□□ 0.02
SYNE1-204ENST00000367248 RUSC2Q8N2Y8 1516 aa15.16■□□□□ 0.02
SYNE1-204ENST00000367248 HSPA5P11021 654 aaKnown RBP15.15■□□□□ 0.02
SYNE1-204ENST00000367248 FGD5Q6ZNL6 1462 aa15.15■□□□□ 0.02
SYNE1-204ENST00000367248 WASHC2CQ9Y4E1 1318 aa15.13■□□□□ 0.01
SYNE1-204ENST00000367248 GAPVD1Q14C86 1478 aa15.12■□□□□ 0.01
SYNE1-204ENST00000367248 EID1Q9Y6B2 187 aa15.12■□□□□ 0.01
SYNE1-204ENST00000367248 RAD54L2Q9Y4B4 1467 aa15.12■□□□□ 0.01
SYNE1-204ENST00000367248 TPRNQ4KMQ1 711 aa15.11■□□□□ 0.01
SYNE1-204ENST00000367248 MORC1Q86VD1 984 aa15.11■□□□□ 0.01
SYNE1-204ENST00000367248 GOLGA2Q08379 1002 aa15.09■□□□□ 0.01
SYNE1-204ENST00000367248 FAM69CQ0P6D2 419 aa15.09■□□□□ 0.01
SYNE1-204ENST00000367248 HDGFL2Q7Z4V5 671 aaPredicted RBP15.08■□□□□ 0
SYNE1-204ENST00000367248 L3MBTL2Q969R5 705 aa15.08■□□□□ 0
SYNE1-204ENST00000367248 OS9Q13438 667 aaPredicted RBP15.07■□□□□ 0
SYNE1-204ENST00000367248 FRAT1Q92837 279 aaPredicted RBP15.07■□□□□ 0
SYNE1-204ENST00000367248 FTSJ3Q8IY81 847 aaKnown RBP15.07■□□□□ 0
SYNE1-204ENST00000367248 PNNQ9H307 717 aaKnown RBP15.07■□□□□ 0
SYNE1-204ENST00000367248 PHF23Q9BUL5 403 aaPredicted RBP15.06■□□□□ 0
SYNE1-204ENST00000367248 AQRO60306 1485 aaKnown RBP eCLIP15.05■□□□□ 0
SYNE1-204ENST00000367248 ROCK2O75116 1388 aaKnown RBP15.05■□□□□ 0
SYNE1-204ENST00000367248 LTV1Q96GA3 475 aaPredicted RBP15.05■□□□□ 0
SYNE1-204ENST00000367248 NGDNQ8NEJ9 315 aaKnown RBP15.04■□□□□ -0
SYNE1-204ENST00000367248 ISY1Q9ULR0 285 aaKnown RBP15.03■□□□□ -0
SYNE1-204ENST00000367248 SUPT16HQ9Y5B9 1047 aaKnown RBP15.02■□□□□ -0
SYNE1-204ENST00000367248 MEX3CQ5U5Q3 659 aaKnown RBP15.01□□□□□ -0.01
SYNE1-204ENST00000367248 CCER2I3L3R5 266 aa15.01□□□□□ -0.01
SYNE1-204ENST00000367248 KTN1Q86UP2 1357 aaKnown RBP15□□□□□ -0.01
SYNE1-204ENST00000367248 RTF1Q92541 710 aaKnown RBP15□□□□□ -0.01
SYNE1-204ENST00000367248 CFTRP13569 1480 aa14.99□□□□□ -0.01
SYNE1-204ENST00000367248 EIF3AQ14152 1382 aaKnown RBP14.99□□□□□ -0.01
SYNE1-204ENST00000367248 MSH5O43196 834 aa14.99□□□□□ -0.01
SYNE1-204ENST00000367248 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.98□□□□□ -0.01
SYNE1-204ENST00000367248 MS4A1P11836 297 aa14.98□□□□□ -0.01
SYNE1-204ENST00000367248 CHMP4BQ9H444 224 aaKnown RBP14.98□□□□□ -0.01
SYNE1-204ENST00000367248 ANP32BQ92688 251 aaKnown RBP14.97□□□□□ -0.01
SYNE1-204ENST00000367248 NAP1L2Q9ULW6 460 aaPredicted RBP14.96□□□□□ -0.01
SYNE1-204ENST00000367248 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.96□□□□□ -0.01
SYNE1-204ENST00000367248 TERF2IPQ9NYB0 399 aa14.96□□□□□ -0.02
SYNE1-204ENST00000367248 CDK11BP21127 795 aaKnown RBP14.95□□□□□ -0.02
SYNE1-204ENST00000367248 GRIN2BQ13224 1484 aa14.95□□□□□ -0.02
SYNE1-204ENST00000367248 RALBP1Q15311 655 aa14.94□□□□□ -0.02
SYNE1-204ENST00000367248 CCDC144AA2RUR9 1427 aa14.94□□□□□ -0.02
SYNE1-204ENST00000367248 U2AF1L5P0DN76 240 aaPredicted RBP14.94□□□□□ -0.02
SYNE1-204ENST00000367248 U2AF1Q01081 240 aaKnown RBP eCLIP14.94□□□□□ -0.02
SYNE1-204ENST00000367248 KLHL34Q8N239 644 aa14.94□□□□□ -0.02
SYNE1-204ENST00000367248 TRAK1Q9UPV9 953 aa14.93□□□□□ -0.02
SYNE1-204ENST00000367248 EVA1CP58658 441 aa14.92□□□□□ -0.02
SYNE1-204ENST00000367248 APBB1O00213 710 aa14.92□□□□□ -0.02
SYNE1-204ENST00000367248 VGFO15240 615 aaPredicted RBP14.92□□□□□ -0.02
SYNE1-204ENST00000367248 NESP48681 1621 aa14.91□□□□□ -0.02
SYNE1-204ENST00000367248 MYOM3Q5VTT5 1437 aa14.91□□□□□ -0.02
SYNE1-204ENST00000367248 NCBP3Q53F19 620 aaKnown RBP14.91□□□□□ -0.02
SYNE1-204ENST00000367248 TMX4Q9H1E5 349 aaPredicted RBP14.9□□□□□ -0.02
SYNE1-204ENST00000367248 PPP4R2Q9NY27 417 aa14.9□□□□□ -0.02
SYNE1-204ENST00000367248 AMPHP49418 695 aa14.89□□□□□ -0.03
SYNE1-204ENST00000367248 DHX57Q6P158 1386 aaKnown RBP14.89□□□□□ -0.03
SYNE1-204ENST00000367248 FGD1P98174 961 aa14.89□□□□□ -0.03
SYNE1-204ENST00000367248 ZNF644Q9H582 1327 aaPredicted RBP14.89□□□□□ -0.03
SYNE1-204ENST00000367248 BECN1Q14457 450 aa14.88□□□□□ -0.03
SYNE1-204ENST00000367248 MRC2Q9UBG0 1479 aa14.88□□□□□ -0.03
SYNE1-204ENST00000367248 KCNJ4P48050 445 aa14.88□□□□□ -0.03
SYNE1-204ENST00000367248 CHMP3Q9Y3E7 222 aa14.88□□□□□ -0.03
SYNE1-204ENST00000367248 RGS3P49796 1198 aa14.87□□□□□ -0.03
SYNE1-204ENST00000367248 CASC1Q6TDU7 716 aa14.87□□□□□ -0.03
SYNE1-204ENST00000367248 ST20-MTHFSA0A0A6YYL1 179 aa14.86□□□□□ -0.03
SYNE1-204ENST00000367248 G3V3G9 751 aa14.86□□□□□ -0.03
SYNE1-204ENST00000367248 DCAF8Q5TAQ9 597 aa14.86□□□□□ -0.03
SYNE1-204ENST00000367248 UACAQ9BZF9 1416 aa14.86□□□□□ -0.03
SYNE1-204ENST00000367248 EIF5BO60841 1220 aaKnown RBP14.86□□□□□ -0.03
SYNE1-204ENST00000367248 SYTL4Q96C24 671 aaPredicted RBP14.86□□□□□ -0.03
SYNE1-204ENST00000367248 GTF2E1P29083 439 aaPredicted RBP14.86□□□□□ -0.03
SYNE1-204ENST00000367248 IFT140Q96RY7 1462 aa14.85□□□□□ -0.03
SYNE1-204ENST00000367248 CALD1Q05682 793 aaKnown RBP14.85□□□□□ -0.03
SYNE1-204ENST00000367248 FGD6Q6ZV73 1430 aa14.85□□□□□ -0.03
SYNE1-204ENST00000367248 NLRP13Q86W25 1043 aa14.84□□□□□ -0.03
SYNE1-204ENST00000367248 PRG4Q92954 1404 aaPredicted RBP14.84□□□□□ -0.03
SYNE1-204ENST00000367248 DDRGK1Q96HY6 314 aa14.84□□□□□ -0.03
SYNE1-204ENST00000367248 NBR1Q14596 966 aa14.84□□□□□ -0.03
SYNE1-204ENST00000367248 KIF15Q9NS87 1388 aa14.83□□□□□ -0.03
SYNE1-204ENST00000367248 HMGXB3Q12766 1538 aa14.83□□□□□ -0.04
SYNE1-204ENST00000367248 AMER1Q5JTC6 1135 aaPredicted RBP14.83□□□□□ -0.04
SYNE1-204ENST00000367248 PHLDB1Q86UU1 1377 aa14.82□□□□□ -0.04
SYNE1-204ENST00000367248 CLSTN1O94985 981 aa14.81□□□□□ -0.04
SYNE1-204ENST00000367248 CASKIN1Q8WXD9 1431 aa14.81□□□□□ -0.04
SYNE1-204ENST00000367248 IPO8O15397 1037 aaKnown RBP14.8□□□□□ -0.04
SYNE1-204ENST00000367248 NCLP19338 710 aaKnown RBP14.8□□□□□ -0.04
SYNE1-204ENST00000367248 AFAP1Q8N556 730 aa14.8□□□□□ -0.04
SYNE1-204ENST00000367248 MINK1Q8N4C8 1332 aaPredicted RBP14.79□□□□□ -0.04
SYNE1-204ENST00000367248 TOPBP1Q92547 1522 aa14.79□□□□□ -0.04
SYNE1-204ENST00000367248 CHMP4AQ9BY43 222 aa14.79□□□□□ -0.04
SYNE1-204ENST00000367248 POLA1P09884 1462 aaPredicted RBP14.78□□□□□ -0.04
SYNE1-204ENST00000367248 TAF7LQ5H9L4 462 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms