RNA–Protein interactions for RNA: ENST00000361675.6

CALD1-201, Transcript of caldesmon 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CALD1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-201ENST00000361675 PPP6R1Q9UPN7 881 aa12.26□□□□□ -0.45
CALD1-201ENST00000361675 ATP1B4Q9UN42 357 aaPredicted RBP12.26□□□□□ -0.45
CALD1-201ENST00000361675 HSP90AA2PQ14568 343 aaPredicted RBP12.25□□□□□ -0.45
CALD1-201ENST00000361675 CNPY4Q8N129 248 aa12.24□□□□□ -0.45
CALD1-201ENST00000361675 HNRNPUQ00839 825 aaKnown RBP eCLIP12.23□□□□□ -0.45
CALD1-201ENST00000361675 RRBP1Q9P2E9 1410 aaKnown RBP12.23□□□□□ -0.45
CALD1-201ENST00000361675 BBXQ8WY36 941 aaPredicted RBP12.23□□□□□ -0.45
CALD1-201ENST00000361675 WDR97A6NE52 1622 aa12.23□□□□□ -0.45
CALD1-201ENST00000361675 WWC1Q8IX03 1113 aa12.21□□□□□ -0.45
CALD1-201ENST00000361675 PHLDB1Q86UU1 1377 aa12.21□□□□□ -0.45
CALD1-201ENST00000361675 PDS5BQ9NTI5 1447 aa12.21□□□□□ -0.45
CALD1-201ENST00000361675 TIAM1Q13009 1591 aa12.21□□□□□ -0.45
CALD1-201ENST00000361675 DHX57Q6P158 1386 aaKnown RBP12.21□□□□□ -0.46
CALD1-201ENST00000361675 PCF11O94913 1555 aaKnown RBP12.21□□□□□ -0.46
CALD1-201ENST00000361675 NCLP19338 710 aaKnown RBP12.2□□□□□ -0.46
CALD1-201ENST00000361675 RSPH4AQ5TD94 716 aa12.2□□□□□ -0.46
CALD1-201ENST00000361675 ZFP91Q96JP5 570 aaPredicted RBP12.2□□□□□ -0.46
CALD1-201ENST00000361675 CCNB3Q8WWL7 1395 aa12.2□□□□□ -0.46
CALD1-201ENST00000361675 ZNF592Q92610 1267 aa12.2□□□□□ -0.46
CALD1-201ENST00000361675 GAPVD1Q14C86 1478 aa12.19□□□□□ -0.46
CALD1-201ENST00000361675 BCCIPQ9P287 314 aaKnown RBP eCLIP12.19□□□□□ -0.46
CALD1-201ENST00000361675 ABCA5Q8WWZ7 1642 aa12.19□□□□□ -0.46
CALD1-201ENST00000361675 IPO9Q96P70 1041 aaKnown RBP12.18□□□□□ -0.46
CALD1-201ENST00000361675 LRRC9Q6ZRR7 1453 aa12.18□□□□□ -0.46
CALD1-201ENST00000361675 HIRIP3Q9BW71 556 aaPredicted RBP12.18□□□□□ -0.46
CALD1-201ENST00000361675 AQRO60306 1485 aaKnown RBP eCLIP12.18□□□□□ -0.465e-16■■□□□ 11.9
CALD1-201ENST00000361675 PATL2C9JE40 543 aaKnown RBP12.17□□□□□ -0.46
CALD1-201ENST00000361675 TARBP1Q13395 1621 aaKnown RBP12.16□□□□□ -0.46
CALD1-201ENST00000361675 ANP32CO43423 234 aa12.16□□□□□ -0.46
CALD1-201ENST00000361675 HSP90AA1P07900 732 aaKnown RBP12.16□□□□□ -0.46
CALD1-201ENST00000361675 CUL7Q14999 1698 aa12.15□□□□□ -0.46
CALD1-201ENST00000361675 USP35Q9P2H5 1018 aa12.13□□□□□ -0.47
CALD1-201ENST00000361675 CNGB1Q14028 1251 aaPredicted RBP12.13□□□□□ -0.47
CALD1-201ENST00000361675 CTTNBP2Q8WZ74 1663 aa12.13□□□□□ -0.47
CALD1-201ENST00000361675 PPP4R2Q9NY27 417 aa12.13□□□□□ -0.47
CALD1-201ENST00000361675 FAM50AQ14320 339 aaKnown RBP12.12□□□□□ -0.47
CALD1-201ENST00000361675 FHAD1B1AJZ9 1412 aa12.11□□□□□ -0.47
CALD1-201ENST00000361675 ZNF608Q9ULD9 1512 aaPredicted RBP12.11□□□□□ -0.47
CALD1-201ENST00000361675 MAP3K1Q13233 1512 aa12.11□□□□□ -0.47
CALD1-201ENST00000361675 RAB3GAP2Q9H2M9 1393 aa12.1□□□□□ -0.47
CALD1-201ENST00000361675 GSE1Q14687 1217 aa12.1□□□□□ -0.47
CALD1-201ENST00000361675 SNAPC4Q5SXM2 1469 aa12.1□□□□□ -0.47
CALD1-201ENST00000361675 CANXP27824 592 aaKnown RBP12.1□□□□□ -0.47
CALD1-201ENST00000361675 LRRIQ1Q96JM4 1722 aa12.1□□□□□ -0.47
CALD1-201ENST00000361675 CASKIN1Q8WXD9 1431 aa12.1□□□□□ -0.47
CALD1-201ENST00000361675 PLCD3Q8N3E9 789 aa12.1□□□□□ -0.47
CALD1-201ENST00000361675 CFAP43Q8NDM7 1665 aa12.09□□□□□ -0.47
CALD1-201ENST00000361675 C11orf95C9JLR9 678 aaPredicted RBP12.09□□□□□ -0.47
CALD1-201ENST00000361675 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.09□□□□□ -0.47
CALD1-201ENST00000361675 ARID3CA6NKF2 412 aa12.08□□□□□ -0.48
CALD1-201ENST00000361675 EFCAB5A4FU69 1503 aa12.07□□□□□ -0.48
CALD1-201ENST00000361675 FYCO1Q9BQS8 1478 aa12.07□□□□□ -0.48
CALD1-201ENST00000361675 SAMD9Q5K651 1589 aa12.06□□□□□ -0.48
CALD1-201ENST00000361675 MRC2Q9UBG0 1479 aa12.06□□□□□ -0.48
CALD1-201ENST00000361675 PPM1GO15355 546 aaPredicted RBP12.06□□□□□ -0.48
CALD1-201ENST00000361675 HMGB1P09429 215 aaKnown RBP12.06□□□□□ -0.48
CALD1-201ENST00000361675 SECISBP2LQ93073 1101 aaKnown RBP12.06□□□□□ -0.48
CALD1-201ENST00000361675 FRAT1Q92837 279 aaPredicted RBP12.05□□□□□ -0.48
CALD1-201ENST00000361675 PNNQ9H307 717 aaKnown RBP12.05□□□□□ -0.48
CALD1-201ENST00000361675 SENP3-EIF4A1A0A087X0R7 540 aa12.05□□□□□ -0.48
CALD1-201ENST00000361675 FBLN2P98095 1184 aa12.04□□□□□ -0.48
CALD1-201ENST00000361675 SIN3AQ96ST3 1273 aa12.04□□□□□ -0.48
CALD1-201ENST00000361675 MAPKBP1O60336 1514 aa12.04□□□□□ -0.48
CALD1-201ENST00000361675 PBRM1Q86U86 1689 aa12.04□□□□□ -0.48
CALD1-201ENST00000361675 PTPRKQ15262 1439 aa12.03□□□□□ -0.48
CALD1-201ENST00000361675 MAGI3Q5TCQ9 1506 aa12.03□□□□□ -0.48
CALD1-201ENST00000361675 FMN1Q68DA7 1419 aa12.02□□□□□ -0.48
CALD1-201ENST00000361675 GRIN2BQ13224 1484 aa12.02□□□□□ -0.48
CALD1-201ENST00000361675 PTMSP20962 102 aa12.02□□□□□ -0.49
CALD1-201ENST00000361675 RGS3P49796 1198 aa12.01□□□□□ -0.49
CALD1-201ENST00000361675 SETD5Q9C0A6 1442 aa12.01□□□□□ -0.49
CALD1-201ENST00000361675 TMED8Q6PL24 325 aaPredicted RBP12.01□□□□□ -0.49
CALD1-201ENST00000361675 PSMD1Q99460 953 aa12.01□□□□□ -0.49
CALD1-201ENST00000361675 ADAMTS12P58397 1594 aa12□□□□□ -0.49
CALD1-201ENST00000361675 SLC4A3P48751 1232 aa12□□□□□ -0.49
CALD1-201ENST00000361675 OS9Q13438 667 aaPredicted RBP12□□□□□ -0.49
CALD1-201ENST00000361675 MTUS2Q5JR59 1369 aa11.99□□□□□ -0.49
CALD1-201ENST00000361675 CWC22Q9HCG8 908 aaKnown RBP11.98□□□□□ -0.49
CALD1-201ENST00000361675 FGD6Q6ZV73 1430 aa11.98□□□□□ -0.49
CALD1-201ENST00000361675 FAM43AQ8N2R8 423 aa11.98□□□□□ -0.49
CALD1-201ENST00000361675 WDR62O43379 1518 aa11.97□□□□□ -0.49
CALD1-201ENST00000361675 FAM9BQ8IZU0 186 aa11.97□□□□□ -0.49
CALD1-201ENST00000361675 NCOA2Q15596 1464 aa11.97□□□□□ -0.49
CALD1-201ENST00000361675 CDK13Q14004 1512 aaKnown RBP11.96□□□□□ -0.49
CALD1-201ENST00000361675 RRP9O43818 475 aaKnown RBP11.96□□□□□ -0.5
CALD1-201ENST00000361675 IQGAP2Q13576 1575 aa11.95□□□□□ -0.5
CALD1-201ENST00000361675 PLCD4Q9BRC7 762 aa11.95□□□□□ -0.5
CALD1-201ENST00000361675 IPO4Q8TEX9 1081 aaKnown RBP11.95□□□□□ -0.5
CALD1-201ENST00000361675 ZNF428Q96B54 188 aa11.95□□□□□ -0.5
CALD1-201ENST00000361675 IFT140Q96RY7 1462 aa11.95□□□□□ -0.5
CALD1-201ENST00000361675 APPP05067 770 aa11.94□□□□□ -0.5
CALD1-201ENST00000361675 SLC4A1APQ9BWU0 796 aaKnown RBP11.94□□□□□ -0.5
CALD1-201ENST00000361675 WASHC2AQ641Q2 1341 aa11.93□□□□□ -0.5
CALD1-201ENST00000361675 ERCC6Q03468 1493 aa11.93□□□□□ -0.5
CALD1-201ENST00000361675 EIF4G3O43432 1585 aaKnown RBP11.93□□□□□ -0.5
CALD1-201ENST00000361675 TICAM2Q86XR7 235 aa11.92□□□□□ -0.5
CALD1-201ENST00000361675 FTSJ3Q8IY81 847 aaKnown RBP11.92□□□□□ -0.5
CALD1-201ENST00000361675 CHIC2Q9UKJ5 165 aa11.92□□□□□ -0.5
CALD1-201ENST00000361675 NFKBIBQ15653 356 aa11.92□□□□□ -0.5
CALD1-201ENST00000361675 KDM2AQ9Y2K7 1162 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms