RNA–Protein interactions for RNA: ENST00000357162.6

VPS13B-202, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13B, Length 14,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-202ENST00000357162 GPS2Q13227 327 aa8.26□□□□□ -1.09
VPS13B-202ENST00000357162 HMGN5P82970 282 aaKnown RBP8.26□□□□□ -1.09
VPS13B-202ENST00000357162 TNNT3P45378 269 aaPredicted RBP8.26□□□□□ -1.09
VPS13B-202ENST00000357162 TPM4P67936 248 aa8.25□□□□□ -1.09
VPS13B-202ENST00000357162 PMFBP1Q8TBY8 1022 aa8.25□□□□□ -1.09
VPS13B-202ENST00000357162 RP1L1Q8IWN7 2480 aaPredicted RBP8.25□□□□□ -1.09
VPS13B-202ENST00000357162 TMF1P82094 1093 aa8.24□□□□□ -1.09
VPS13B-202ENST00000357162 CGNL1Q0VF96 1302 aa8.24□□□□□ -1.09
VPS13B-202ENST00000357162 PDIA4P13667 645 aaKnown RBP8.24□□□□□ -1.09
VPS13B-202ENST00000357162 KANK1Q14678 1352 aa8.24□□□□□ -1.09
VPS13B-202ENST00000357162 CARD11Q9BXL7 1154 aa8.23□□□□□ -1.09
VPS13B-202ENST00000357162 RSPH4AQ5TD94 716 aa8.23□□□□□ -1.09
VPS13B-202ENST00000357162 RCAN3Q9UKA8 241 aa8.23□□□□□ -1.09
VPS13B-202ENST00000357162 NINLQ9Y2I6 1382 aa8.23□□□□□ -1.09
VPS13B-202ENST00000357162 SETQ01105 290 aaPredicted RBP8.23□□□□□ -1.09
VPS13B-202ENST00000357162 TEX35Q5T0J7 233 aa8.23□□□□□ -1.09
VPS13B-202ENST00000357162 ST18O60284 1047 aa8.22□□□□□ -1.09
VPS13B-202ENST00000357162 ATRXP46100 2492 aa8.22□□□□□ -1.09
VPS13B-202ENST00000357162 HMMRO75330 724 aa8.22□□□□□ -1.09
VPS13B-202ENST00000357162 TPM3P06753 285 aa8.22□□□□□ -1.09
VPS13B-202ENST00000357162 PLEKHD1A6NEE1 506 aa8.22□□□□□ -1.09
VPS13B-202ENST00000357162 KIAA1211Q6ZU35 1233 aa8.22□□□□□ -1.09
VPS13B-202ENST00000357162 CENPQQ7L2Z9 268 aaPredicted RBP8.22□□□□□ -1.09
VPS13B-202ENST00000357162 KIF16BQ96L93 1317 aa8.22□□□□□ -1.09
VPS13B-202ENST00000357162 KIF15Q9NS87 1388 aa8.22□□□□□ -1.09
VPS13B-202ENST00000357162 SCAPERQ9BY12 1400 aa8.22□□□□□ -1.09
VPS13B-202ENST00000357162 CAVIN1Q6NZI2 390 aaKnown RBP8.2□□□□□ -1.1
VPS13B-202ENST00000357162 ANKRD30AQ9BXX3 1397 aa8.2□□□□□ -1.1
VPS13B-202ENST00000357162 GPATCH3Q96I76 525 aa8.2□□□□□ -1.1
VPS13B-202ENST00000357162 LMOD3Q0VAK6 560 aa8.2□□□□□ -1.1
VPS13B-202ENST00000357162 ANO8Q9HCE9 1232 aaPredicted RBP8.2□□□□□ -1.1
VPS13B-202ENST00000357162 STAG3Q9UJ98 1225 aa8.2□□□□□ -1.1
VPS13B-202ENST00000357162 GSE1Q14687 1217 aa8.2□□□□□ -1.1
VPS13B-202ENST00000357162 NOM1Q5C9Z4 860 aaKnown RBP8.2□□□□□ -1.1
VPS13B-202ENST00000357162 ZNF777Q9ULD5 760 aaPredicted RBP8.2□□□□□ -1.1
VPS13B-202ENST00000357162 TPM2P07951 284 aa8.19□□□□□ -1.1
VPS13B-202ENST00000357162 TSHZ2Q9NRE2 1034 aa8.19□□□□□ -1.1
VPS13B-202ENST00000357162 TOP2AP11388 1531 aaKnown RBP8.19□□□□□ -1.1
VPS13B-202ENST00000357162 WWC1Q8IX03 1113 aa8.19□□□□□ -1.1
VPS13B-202ENST00000357162 CFDP1Q9UEE9 299 aaPredicted RBP8.19□□□□□ -1.1
VPS13B-202ENST00000357162 RRP9O43818 475 aaKnown RBP8.19□□□□□ -1.1
VPS13B-202ENST00000357162 CCDC66A2RUB6 948 aa8.18□□□□□ -1.1
VPS13B-202ENST00000357162 UACAQ9BZF9 1416 aa8.18□□□□□ -1.1
VPS13B-202ENST00000357162 WASHC2AQ641Q2 1341 aa8.18□□□□□ -1.1
VPS13B-202ENST00000357162 WASHC2CQ9Y4E1 1318 aa8.18□□□□□ -1.1
VPS13B-202ENST00000357162 FAM161AQ3B820 660 aa8.18□□□□□ -1.1
VPS13B-202ENST00000357162 CWC15Q9P013 229 aaKnown RBP8.17□□□□□ -1.1
VPS13B-202ENST00000357162 ACBD3Q9H3P7 528 aa8.17□□□□□ -1.1
VPS13B-202ENST00000357162 CCDC18Q5T9S5 1454 aa8.17□□□□□ -1.1
VPS13B-202ENST00000357162 CUX1P39880 1505 aa8.17□□□□□ -1.1
VPS13B-202ENST00000357162 CCDC70Q6NSX1 233 aa8.17□□□□□ -1.1
VPS13B-202ENST00000357162 CNTLNQ9NXG0 1405 aa8.17□□□□□ -1.1
VPS13B-202ENST00000357162 NPM1P06748 294 aaKnown RBP eCLIP8.16□□□□□ -1.1
VPS13B-202ENST00000357162 FGD1P98174 961 aa8.16□□□□□ -1.1
VPS13B-202ENST00000357162 TSPYL1Q9H0U9 437 aa8.16□□□□□ -1.1
VPS13B-202ENST00000357162 CCP110O43303 1012 aa8.16□□□□□ -1.1
VPS13B-202ENST00000357162 ROCK1Q13464 1354 aa8.15□□□□□ -1.1
VPS13B-202ENST00000357162 HDGFP51858 240 aaKnown RBP8.15□□□□□ -1.1
VPS13B-202ENST00000357162 REC8O95072 547 aa8.15□□□□□ -1.1
VPS13B-202ENST00000357162 RGS3P49796 1198 aa8.15□□□□□ -1.1
VPS13B-202ENST00000357162 DIAPH3Q9NSV4 1193 aa8.15□□□□□ -1.11
VPS13B-202ENST00000357162 MRE11P49959 708 aa8.14□□□□□ -1.11
VPS13B-202ENST00000357162 ARGLU1Q9NWB6 273 aaPredicted RBP8.14□□□□□ -1.11
VPS13B-202ENST00000357162 MIA2Q96PC5 1412 aa8.14□□□□□ -1.11
VPS13B-202ENST00000357162 ARXQ96QS3 562 aa8.14□□□□□ -1.11
VPS13B-202ENST00000357162 B4GALNT3Q6L9W6 998 aa8.14□□□□□ -1.11
VPS13B-202ENST00000357162 FAM43AQ8N2R8 423 aa8.14□□□□□ -1.11
VPS13B-202ENST00000357162 DRC7Q8IY82 874 aa8.14□□□□□ -1.11
VPS13B-202ENST00000357162 PPP1R15AO75807 674 aaPredicted RBP8.13□□□□□ -1.11
VPS13B-202ENST00000357162 NUCB2P80303 420 aa8.13□□□□□ -1.11
VPS13B-202ENST00000357162 PKNOX2Q96KN3 472 aa8.13□□□□□ -1.11
VPS13B-202ENST00000357162 ABCC8Q09428 1581 aa8.13□□□□□ -1.11
VPS13B-202ENST00000357162 KCNJ4P48050 445 aa8.13□□□□□ -1.11
VPS13B-202ENST00000357162 RAB3GAP2Q9H2M9 1393 aa8.13□□□□□ -1.11
VPS13B-202ENST00000357162 CT47B1P0C2W7 299 aaPredicted RBP8.13□□□□□ -1.11
VPS13B-202ENST00000357162 CARMIL1Q5VZK9 1371 aa8.13□□□□□ -1.11
VPS13B-202ENST00000357162 KIF7Q2M1P5 1343 aa8.13□□□□□ -1.11
VPS13B-202ENST00000357162 ERICH3Q5RHP9 1530 aa8.12□□□□□ -1.11
VPS13B-202ENST00000357162 MBD3O95983 291 aa8.12□□□□□ -1.11
VPS13B-202ENST00000357162 MYBBP1AQ9BQG0 1328 aaKnown RBP8.12□□□□□ -1.11
VPS13B-202ENST00000357162 CDR1P51861 262 aa8.12□□□□□ -1.11
VPS13B-202ENST00000357162 LRRFIP1Q32MZ4 808 aaKnown RBP8.12□□□□□ -1.11
VPS13B-202ENST00000357162 KIF21BO75037 1637 aa8.12□□□□□ -1.11
VPS13B-202ENST00000357162 PDCL2Q8N4E4 241 aa8.11□□□□□ -1.11
VPS13B-202ENST00000357162 PLEKHH2Q8IVE3 1493 aa8.1□□□□□ -1.11
VPS13B-202ENST00000357162 LETM1O95202 739 aaPredicted RBP8.1□□□□□ -1.11
VPS13B-202ENST00000357162 RRP7BPQ9NSQ0 103 aa8.1□□□□□ -1.11
VPS13B-202ENST00000357162 TPM1P09493 284 aa8.1□□□□□ -1.11
VPS13B-202ENST00000357162 MCM2P49736 904 aa8.1□□□□□ -1.11
VPS13B-202ENST00000357162 FAM184AQ8NB25 1140 aa8.1□□□□□ -1.11
VPS13B-202ENST00000357162 P3H3Q8IVL6 736 aa8.1□□□□□ -1.11
VPS13B-202ENST00000357162 CIZ1Q9ULV3 898 aaPredicted RBP8.1□□□□□ -1.11
VPS13B-202ENST00000357162 E9PSI1 815 aa8.09□□□□□ -1.11
VPS13B-202ENST00000357162 CENPJQ9HC77 1338 aaPredicted RBP8.09□□□□□ -1.11
VPS13B-202ENST00000357162 PABPN1Q86U42 306 aaKnown RBP eCLIP8.09□□□□□ -1.11
VPS13B-202ENST00000357162 IRX6P78412 446 aaPredicted RBP8.09□□□□□ -1.11
VPS13B-202ENST00000357162 CCDC39Q9UFE4 941 aa8.09□□□□□ -1.11
VPS13B-202ENST00000357162 GOLGA2Q08379 1002 aa8.09□□□□□ -1.11
VPS13B-202ENST00000357162 CHMP5Q9NZZ3 219 aa8.09□□□□□ -1.11
VPS13B-202ENST00000357162 CARMIL2Q6F5E8 1435 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms