RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 CDR1P51861 262 aa15.73■□□□□ 0.11
COL6A3-203ENST00000353578 ZCCHC6Q5VYS8 1495 aaKnown RBP15.73■□□□□ 0.11
COL6A3-203ENST00000353578 IPO8O15397 1037 aaKnown RBP15.72■□□□□ 0.11
COL6A3-203ENST00000353578 MTUS2Q5JR59 1369 aa15.72■□□□□ 0.11
COL6A3-203ENST00000353578 UBE2Q2Q8WVN8 375 aa15.72■□□□□ 0.11
COL6A3-203ENST00000353578 FGD1P98174 961 aa15.72■□□□□ 0.11
COL6A3-203ENST00000353578 CAVIN1Q6NZI2 390 aaKnown RBP15.72■□□□□ 0.11
COL6A3-203ENST00000353578 RDXP35241 583 aaKnown RBP15.71■□□□□ 0.11
COL6A3-203ENST00000353578 DCTN1Q14203 1278 aa15.7■□□□□ 0.1
COL6A3-203ENST00000353578 CHMP4AQ9BY43 222 aa15.7■□□□□ 0.1
COL6A3-203ENST00000353578 TNIKQ9UKE5 1360 aa15.7■□□□□ 0.1
COL6A3-203ENST00000353578 ST18O60284 1047 aa15.69■□□□□ 0.1
COL6A3-203ENST00000353578 AAMPQ13685 434 aa15.69■□□□□ 0.1
COL6A3-203ENST00000353578 NUDCQ9Y266 331 aa15.69■□□□□ 0.1
COL6A3-203ENST00000353578 CCDC191Q8NCU4 936 aa15.68■□□□□ 0.1
COL6A3-203ENST00000353578 SALL2Q9Y467 1007 aaPredicted RBP15.68■□□□□ 0.1
COL6A3-203ENST00000353578 HSP90B2PQ58FF3 399 aa15.67■□□□□ 0.1
COL6A3-203ENST00000353578 MRE11P49959 708 aa15.67■□□□□ 0.1
COL6A3-203ENST00000353578 AK7Q96M32 723 aa15.67■□□□□ 0.1
COL6A3-203ENST00000353578 RALBP1Q15311 655 aa15.66■□□□□ 0.1
COL6A3-203ENST00000353578 KIAA1211Q6ZU35 1233 aa15.66■□□□□ 0.1
COL6A3-203ENST00000353578 KCNJ4P48050 445 aa15.66■□□□□ 0.1
COL6A3-203ENST00000353578 HMGB1P09429 215 aaKnown RBP15.66■□□□□ 0.1
COL6A3-203ENST00000353578 CCDC39Q9UFE4 941 aa15.66■□□□□ 0.1
COL6A3-203ENST00000353578 FHAD1B1AJZ9 1412 aa15.65■□□□□ 0.1
COL6A3-203ENST00000353578 RRP12Q5JTH9 1297 aaKnown RBP15.64■□□□□ 0.09
COL6A3-203ENST00000353578 KTN1Q86UP2 1357 aaKnown RBP15.64■□□□□ 0.09
COL6A3-203ENST00000353578 CCP110O43303 1012 aa15.64■□□□□ 0.09
COL6A3-203ENST00000353578 ERCC4Q92889 916 aaPredicted RBP15.64■□□□□ 0.09
COL6A3-203ENST00000353578 TPM1P09493 284 aa15.63■□□□□ 0.09
COL6A3-203ENST00000353578 PDCL2Q8N4E4 241 aa15.63■□□□□ 0.09
COL6A3-203ENST00000353578 FAM13BQ9NYF5 915 aa15.63■□□□□ 0.09
COL6A3-203ENST00000353578 CENPQQ7L2Z9 268 aaPredicted RBP15.63■□□□□ 0.09
COL6A3-203ENST00000353578 RCAN3Q9UKA8 241 aa15.63■□□□□ 0.09
COL6A3-203ENST00000353578 FAM161AQ3B820 660 aa15.63■□□□□ 0.09
COL6A3-203ENST00000353578 GZF1Q9H116 711 aaPredicted RBP15.63■□□□□ 0.09
COL6A3-203ENST00000353578 HSP90B1P14625 803 aaKnown RBP15.62■□□□□ 0.09
COL6A3-203ENST00000353578 PES1O00541 588 aaKnown RBP15.62■□□□□ 0.09
COL6A3-203ENST00000353578 MYO15BQ96JP2 1530 aa15.62■□□□□ 0.09
COL6A3-203ENST00000353578 EIF3AQ14152 1382 aaKnown RBP15.62■□□□□ 0.09
COL6A3-203ENST00000353578 DEF6Q9H4E7 631 aa15.61■□□□□ 0.09
COL6A3-203ENST00000353578 STK11IPQ8N1F8 1099 aa15.61■□□□□ 0.09
COL6A3-203ENST00000353578 HDAC5Q9UQL6 1122 aa15.6■□□□□ 0.09
COL6A3-203ENST00000353578 SLKQ9H2G2 1235 aaPredicted RBP15.6■□□□□ 0.09
COL6A3-203ENST00000353578 INCENPQ9NQS7 918 aa15.6■□□□□ 0.09
COL6A3-203ENST00000353578 CAGE1Q8TC20 777 aa15.6■□□□□ 0.09
COL6A3-203ENST00000353578 GNL2Q13823 731 aaKnown RBP15.59■□□□□ 0.09
COL6A3-203ENST00000353578 ZBED9Q6R2W3 1325 aa15.59■□□□□ 0.09
COL6A3-203ENST00000353578 BAZ1AQ9NRL2 1556 aaPredicted RBP15.58■□□□□ 0.09
COL6A3-203ENST00000353578 TSR1Q2NL82 804 aaKnown RBP15.58■□□□□ 0.08
COL6A3-203ENST00000353578 GOLGA6L19H0YKK7 550 aa15.58■□□□□ 0.08
COL6A3-203ENST00000353578 NGEFQ8N5V2 710 aa15.58■□□□□ 0.08
COL6A3-203ENST00000353578 LEKR1Q6ZMV7 388 aa15.57■□□□□ 0.08
COL6A3-203ENST00000353578 NEFHP12036 1026 aa15.56■□□□□ 0.08
COL6A3-203ENST00000353578 ARID3AQ99856 593 aa15.56■□□□□ 0.08
COL6A3-203ENST00000353578 CCNB3Q8WWL7 1395 aa15.56■□□□□ 0.08
COL6A3-203ENST00000353578 RB1CC1Q8TDY2 1594 aa15.56■□□□□ 0.08
COL6A3-203ENST00000353578 CCDC173Q0VFZ6 552 aa15.55■□□□□ 0.08
COL6A3-203ENST00000353578 FAM107BQ9H098 131 aa15.55■□□□□ 0.08
COL6A3-203ENST00000353578 LETM1O95202 739 aaPredicted RBP15.54■□□□□ 0.08
COL6A3-203ENST00000353578 GPATCH3Q96I76 525 aa15.54■□□□□ 0.08
COL6A3-203ENST00000353578 TSPY4P0CV99 314 aa15.54■□□□□ 0.08
COL6A3-203ENST00000353578 TSPY10P0CW01 314 aa15.54■□□□□ 0.08
COL6A3-203ENST00000353578 GOLGA6L7A0A1B0GV03 622 aa15.54■□□□□ 0.08
COL6A3-203ENST00000353578 RUFY1Q96T51 708 aa15.53■□□□□ 0.08
COL6A3-203ENST00000353578 H0YHG0 523 aa15.53■□□□□ 0.08
COL6A3-203ENST00000353578 ZRSR2Q15696 482 aaKnown RBP15.53■□□□□ 0.08
COL6A3-203ENST00000353578 IPO7O95373 1038 aaKnown RBP15.52■□□□□ 0.08
COL6A3-203ENST00000353578 DDX49Q9Y6V7 483 aaKnown RBP15.52■□□□□ 0.07
COL6A3-203ENST00000353578 RNF20Q5VTR2 975 aa15.5■□□□□ 0.07
COL6A3-203ENST00000353578 NUCB2P80303 420 aa15.5■□□□□ 0.07
COL6A3-203ENST00000353578 CHMP5Q9NZZ3 219 aa15.5■□□□□ 0.07
COL6A3-203ENST00000353578 SETD5Q9C0A6 1442 aa15.5■□□□□ 0.07
COL6A3-203ENST00000353578 NASPP49321 788 aaPredicted RBP15.5■□□□□ 0.07
COL6A3-203ENST00000353578 MYO6Q9UM54 1294 aa15.49■□□□□ 0.07
COL6A3-203ENST00000353578 HOOK1Q9UJC3 728 aaKnown RBP15.49■□□□□ 0.07
COL6A3-203ENST00000353578 FRAT1Q92837 279 aaPredicted RBP15.49■□□□□ 0.07
COL6A3-203ENST00000353578 SCRIBQ14160 1630 aa15.49■□□□□ 0.07
COL6A3-203ENST00000353578 PDCL3Q9H2J4 239 aa15.48■□□□□ 0.07
COL6A3-203ENST00000353578 CALCOCO1Q9P1Z2 691 aa15.48■□□□□ 0.07
COL6A3-203ENST00000353578 CGNL1Q0VF96 1302 aa15.48■□□□□ 0.07
COL6A3-203ENST00000353578 PDE4AP27815 886 aa15.48■□□□□ 0.07
COL6A3-203ENST00000353578 OS9Q13438 667 aaPredicted RBP15.47■□□□□ 0.07
COL6A3-203ENST00000353578 NEXNQ0ZGT2 675 aa15.47■□□□□ 0.07
COL6A3-203ENST00000353578 CARD11Q9BXL7 1154 aa15.47■□□□□ 0.07
COL6A3-203ENST00000353578 NAT10Q9H0A0 1025 aaKnown RBP15.47■□□□□ 0.07
COL6A3-203ENST00000353578 ANKRD20A12PQ8NF67 263 aa15.47■□□□□ 0.07
COL6A3-203ENST00000353578 KIF7Q2M1P5 1343 aa15.46■□□□□ 0.07
COL6A3-203ENST00000353578 MBD3O95983 291 aa15.46■□□□□ 0.07
COL6A3-203ENST00000353578 BECN2A8MW95 431 aa15.46■□□□□ 0.07
COL6A3-203ENST00000353578 REC8O95072 547 aa15.44■□□□□ 0.06
COL6A3-203ENST00000353578 PDE4CQ08493 712 aa15.44■□□□□ 0.06
COL6A3-203ENST00000353578 MNS1Q8NEH6 495 aa15.44■□□□□ 0.06
COL6A3-203ENST00000353578 EIF3JO75822 258 aaKnown RBP15.44■□□□□ 0.06
COL6A3-203ENST00000353578 CEP89Q96ST8 783 aa15.44■□□□□ 0.06
COL6A3-203ENST00000353578 KIAA0754O94854 1291 aa15.43■□□□□ 0.06
COL6A3-203ENST00000353578 TMF1P82094 1093 aa15.43■□□□□ 0.06
COL6A3-203ENST00000353578 VPS8Q8N3P4 1428 aa15.43■□□□□ 0.06
COL6A3-203ENST00000353578 ARHGAP35Q9NRY4 1499 aa15.43■□□□□ 0.06
COL6A3-203ENST00000353578 DDX11Q96FC9 970 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms