RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 CENPBP07199 599 aaPredicted RBP18.81■□□□□ 0.6
CLK3-201ENST00000345005 DNMT1P26358 1616 aaKnown RBP18.81■□□□□ 0.6
CLK3-201ENST00000345005 ZCCHC11Q5TAX3 1644 aaKnown RBP18.81■□□□□ 0.6
CLK3-201ENST00000345005 ACIN1Q9UKV3 1341 aaKnown RBP18.8■□□□□ 0.6
CLK3-201ENST00000345005 KDM5BQ9UGL1 1544 aa18.79■□□□□ 0.6
CLK3-201ENST00000345005 GCC2Q8IWJ2 1684 aa18.79■□□□□ 0.6
CLK3-201ENST00000345005 AKNAQ7Z591 1439 aa18.78■□□□□ 0.6
CLK3-201ENST00000345005 CAMSAP2Q08AD1 1489 aa18.78■□□□□ 0.6
CLK3-201ENST00000345005 DAPK1P53355 1430 aa18.77■□□□□ 0.6
CLK3-201ENST00000345005 NAIPQ13075 1403 aa18.77■□□□□ 0.6
CLK3-201ENST00000345005 ZNF644Q9H582 1327 aaPredicted RBP18.76■□□□□ 0.59
CLK3-201ENST00000345005 ABCC5O15440 1437 aa18.74■□□□□ 0.59
CLK3-201ENST00000345005 PREX2Q70Z35 1606 aa18.74■□□□□ 0.59
CLK3-201ENST00000345005 CDC42BPBQ9Y5S2 1711 aa18.73■□□□□ 0.59
CLK3-201ENST00000345005 CHIC2Q9UKJ5 165 aa18.73■□□□□ 0.59
CLK3-201ENST00000345005 ROCK1Q13464 1354 aa18.73■□□□□ 0.59
CLK3-201ENST00000345005 CROCC2H7BZ55 1655 aa18.72■□□□□ 0.59
CLK3-201ENST00000345005 DIEXFQ68CQ4 756 aaKnown RBP18.72■□□□□ 0.59
CLK3-201ENST00000345005 ZNF777Q9ULD5 760 aaPredicted RBP18.72■□□□□ 0.59
CLK3-201ENST00000345005 ADGBQ8N7X0 1667 aa18.71■□□□□ 0.59
CLK3-201ENST00000345005 MYO5CQ9NQX4 1742 aa18.71■□□□□ 0.59
CLK3-201ENST00000345005 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.7■□□□□ 0.583e-12■□□□□ 9.1
CLK3-201ENST00000345005 RRP7BPQ9NSQ0 103 aa18.7■□□□□ 0.58
CLK3-201ENST00000345005 TTC37Q6PGP7 1564 aa18.69■□□□□ 0.58
CLK3-201ENST00000345005 MAPKBP1O60336 1514 aa18.69■□□□□ 0.58
CLK3-201ENST00000345005 KCNH8Q96L42 1107 aa18.65■□□□□ 0.58
CLK3-201ENST00000345005 ARHGEF5Q12774 1597 aa18.65■□□□□ 0.58
CLK3-201ENST00000345005 ADGRL2O95490 1459 aa18.64■□□□□ 0.57
CLK3-201ENST00000345005 SAMD9LQ8IVG5 1584 aa18.64■□□□□ 0.57
CLK3-201ENST00000345005 ARHGAP5Q13017 1502 aa18.63■□□□□ 0.57
CLK3-201ENST00000345005 SHANK2Q9UPX8 1470 aa18.62■□□□□ 0.57
CLK3-201ENST00000345005 RSPH4AQ5TD94 716 aa18.62■□□□□ 0.57
CLK3-201ENST00000345005 KDM6BO15054 1643 aa18.61■□□□□ 0.57
CLK3-201ENST00000345005 NCOA1Q15788 1441 aa18.61■□□□□ 0.57
CLK3-201ENST00000345005 WDR7Q9Y4E6 1490 aa18.61■□□□□ 0.57
CLK3-201ENST00000345005 ANKRD30AQ9BXX3 1397 aa18.6■□□□□ 0.57
CLK3-201ENST00000345005 PLEKHH2Q8IVE3 1493 aa18.59■□□□□ 0.57
CLK3-201ENST00000345005 PLCH2O75038 1416 aa18.59■□□□□ 0.57
CLK3-201ENST00000345005 NPM1P06748 294 aaKnown RBP eCLIP18.58■□□□□ 0.57
CLK3-201ENST00000345005 TSPY4P0CV99 314 aa18.58■□□□□ 0.57
CLK3-201ENST00000345005 TSPY10P0CW01 314 aa18.58■□□□□ 0.57
CLK3-201ENST00000345005 MBD5Q9P267 1494 aa18.58■□□□□ 0.57
CLK3-201ENST00000345005 ZNF316A6NFI3 1004 aaPredicted RBP18.57■□□□□ 0.56
CLK3-201ENST00000345005 HNRNPMP52272 730 aaKnown RBP eCLIP18.57■□□□□ 0.564e-10■■■■■ 38
CLK3-201ENST00000345005 NEUROD1Q13562 356 aa18.57■□□□□ 0.56
CLK3-201ENST00000345005 C9orf84Q5VXU9 1444 aa18.57■□□□□ 0.56
CLK3-201ENST00000345005 CCDC141Q6ZP82 1450 aa18.56■□□□□ 0.56
CLK3-201ENST00000345005 ARAP3Q8WWN8 1544 aa18.56■□□□□ 0.56
CLK3-201ENST00000345005 KIAA1107Q9UPP5 1409 aa18.56■□□□□ 0.56
CLK3-201ENST00000345005 TRIM52Q96A61 297 aa18.56■□□□□ 0.56
CLK3-201ENST00000345005 ABCA9Q8IUA7 1624 aa18.55■□□□□ 0.56
CLK3-201ENST00000345005 TRHP20396 242 aaPredicted RBP18.55■□□□□ 0.56
CLK3-201ENST00000345005 EFCAB2Q5VUJ9 269 aa18.55■□□□□ 0.56
CLK3-201ENST00000345005 ASXL2Q76L83 1435 aa18.54■□□□□ 0.56
CLK3-201ENST00000345005 TIMELESSQ9UNS1 1208 aa18.53■□□□□ 0.56
CLK3-201ENST00000345005 SYCP2Q9BX26 1530 aa18.53■□□□□ 0.56
CLK3-201ENST00000345005 MAST1Q9Y2H9 1570 aa18.52■□□□□ 0.55
CLK3-201ENST00000345005 SIN3AQ96ST3 1273 aa18.5■□□□□ 0.55
CLK3-201ENST00000345005 MPHOSPH9Q99550 1183 aa18.49■□□□□ 0.55
CLK3-201ENST00000345005 ANKRD50Q9ULJ7 1429 aa18.48■□□□□ 0.55
CLK3-201ENST00000345005 ABCC1P33527 1531 aa18.48■□□□□ 0.55
CLK3-201ENST00000345005 GTF3C3Q9Y5Q9 886 aa18.47■□□□□ 0.55
CLK3-201ENST00000345005 KIF15Q9NS87 1388 aa18.46■□□□□ 0.55
CLK3-201ENST00000345005 DENND4BO75064 1496 aaPredicted RBP18.45■□□□□ 0.54
CLK3-201ENST00000345005 ARHGEF12Q9NZN5 1544 aa18.45■□□□□ 0.54
CLK3-201ENST00000345005 PLXNC1O60486 1568 aa18.44■□□□□ 0.54
CLK3-201ENST00000345005 FANCAO15360 1455 aa18.42■□□□□ 0.54
CLK3-201ENST00000345005 SLC4A1APQ9BWU0 796 aaKnown RBP18.41■□□□□ 0.54
CLK3-201ENST00000345005 PZPP20742 1482 aa18.4■□□□□ 0.54
CLK3-201ENST00000345005 TONSLQ96HA7 1378 aa18.39■□□□□ 0.53
CLK3-201ENST00000345005 CFAP74Q9C0B2 1584 aa18.38■□□□□ 0.53
CLK3-201ENST00000345005 KDM5DQ9BY66 1539 aa18.38■□□□□ 0.53
CLK3-201ENST00000345005 TRAPPC8Q9Y2L5 1435 aa18.37■□□□□ 0.53
CLK3-201ENST00000345005 DUOX2Q9NRD8 1548 aa18.36■□□□□ 0.53
CLK3-201ENST00000345005 PPP1R15AO75807 674 aaPredicted RBP18.36■□□□□ 0.53
CLK3-201ENST00000345005 RTEL1-TNFRSF6BF6WH68 1400 aa18.36■□□□□ 0.53
CLK3-201ENST00000345005 ANKRD30BQ9BXX2 1392 aa18.35■□□□□ 0.53
CLK3-201ENST00000345005 ADGRL1O94910 1474 aa18.35■□□□□ 0.53
CLK3-201ENST00000345005 CD109Q6YHK3 1445 aa18.35■□□□□ 0.53
CLK3-201ENST00000345005 NUP155O75694 1391 aa18.35■□□□□ 0.53
CLK3-201ENST00000345005 SPAG9O60271 1321 aaKnown RBP18.33■□□□□ 0.53
CLK3-201ENST00000345005 UNC13BO14795 1591 aa18.32■□□□□ 0.52
CLK3-201ENST00000345005 FOXD1Q16676 465 aa18.32■□□□□ 0.52
CLK3-201ENST00000345005 SCAPERQ9BY12 1400 aa18.32■□□□□ 0.52
CLK3-201ENST00000345005 ERBINQ96RT1 1412 aa18.31■□□□□ 0.52
CLK3-201ENST00000345005 AFAP1Q8N556 730 aa18.3■□□□□ 0.52
CLK3-201ENST00000345005 ZFYVE16Q7Z3T8 1539 aa18.3■□□□□ 0.52
CLK3-201ENST00000345005 PKD2Q13563 968 aa18.3■□□□□ 0.52
CLK3-201ENST00000345005 INO80Q9ULG1 1556 aaPredicted RBP18.3■□□□□ 0.52
CLK3-201ENST00000345005 RPRD2Q5VT52 1461 aaKnown RBP18.29■□□□□ 0.52
CLK3-201ENST00000345005 ATP7AQ04656 1500 aa18.28■□□□□ 0.52
CLK3-201ENST00000345005 KIF13AQ9H1H9 1805 aa18.27■□□□□ 0.52
CLK3-201ENST00000345005 GLI2P10070 1586 aa18.27■□□□□ 0.52
CLK3-201ENST00000345005 FAM135AQ9P2D6 1515 aa18.26■□□□□ 0.51
CLK3-201ENST00000345005 MAP3K4Q9Y6R4 1608 aa18.26■□□□□ 0.51
CLK3-201ENST00000345005 IQGAP3Q86VI3 1631 aa18.25■□□□□ 0.51
CLK3-201ENST00000345005 ZNF518AQ6AHZ1 1483 aa18.25■□□□□ 0.51
CLK3-201ENST00000345005 NEO1Q92859 1461 aa18.24■□□□□ 0.51
CLK3-201ENST00000345005 MAGI2Q86UL8 1455 aa18.23■□□□□ 0.51
CLK3-201ENST00000345005 KIDINS220Q9ULH0 1771 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms