RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 MAPKBP1O60336 1514 aa11.4□□□□□ -0.59
ATG4A-201ENST00000343524 DHX57Q6P158 1386 aaKnown RBP11.39□□□□□ -0.59
ATG4A-201ENST00000343524 EVX2Q03828 476 aa11.39□□□□□ -0.59
ATG4A-201ENST00000343524 UBE2Q2Q8WVN8 375 aa11.38□□□□□ -0.59
ATG4A-201ENST00000343524 PRKAR2AP13861 404 aaKnown RBP11.37□□□□□ -0.59
ATG4A-201ENST00000343524 VPS8Q8N3P4 1428 aa11.37□□□□□ -0.59
ATG4A-201ENST00000343524 DISP3Q9P2K9 1392 aa11.37□□□□□ -0.59
ATG4A-201ENST00000343524 KIF21BO75037 1637 aa11.36□□□□□ -0.59
ATG4A-201ENST00000343524 SHROOM2Q13796 1616 aa11.36□□□□□ -0.59
ATG4A-201ENST00000343524 CCDC88BA6NC98 1476 aa11.34□□□□□ -0.59
ATG4A-201ENST00000343524 CCER2I3L3R5 266 aa11.34□□□□□ -0.59
ATG4A-201ENST00000343524 NPM1P06748 294 aaKnown RBP eCLIP11.33□□□□□ -0.6
ATG4A-201ENST00000343524 ANO8Q9HCE9 1232 aaPredicted RBP11.33□□□□□ -0.6
ATG4A-201ENST00000343524 TSPOAP1O95153 1857 aa11.33□□□□□ -0.6
ATG4A-201ENST00000343524 PBRM1Q86U86 1689 aa11.32□□□□□ -0.6
ATG4A-201ENST00000343524 NUP160Q12769 1436 aa11.32□□□□□ -0.6
ATG4A-201ENST00000343524 FGD5Q6ZNL6 1462 aa11.31□□□□□ -0.6
ATG4A-201ENST00000343524 GRIN2AQ12879 1464 aa11.3□□□□□ -0.6
ATG4A-201ENST00000343524 UBTFP17480 764 aaKnown RBP11.3□□□□□ -0.6
ATG4A-201ENST00000343524 CLIP1P30622 1438 aa11.29□□□□□ -0.6
ATG4A-201ENST00000343524 RTL5Q5HYW3 569 aaPredicted RBP11.28□□□□□ -0.6
ATG4A-201ENST00000343524 NOP58Q9Y2X3 529 aaKnown RBP11.28□□□□□ -0.6
ATG4A-201ENST00000343524 TOP2BQ02880 1626 aa11.26□□□□□ -0.61
ATG4A-201ENST00000343524 C19orf67A6NJJ6 358 aa11.26□□□□□ -0.61
ATG4A-201ENST00000343524 ITGAEP38570 1179 aa11.26□□□□□ -0.61
ATG4A-201ENST00000343524 PRG4Q92954 1404 aaPredicted RBP11.24□□□□□ -0.61
ATG4A-201ENST00000343524 CHADLQ6NUI6 762 aa11.24□□□□□ -0.61
ATG4A-201ENST00000343524 ADCY10Q96PN6 1610 aa11.24□□□□□ -0.61
ATG4A-201ENST00000343524 SALL2Q9Y467 1007 aaPredicted RBP11.23□□□□□ -0.61
ATG4A-201ENST00000343524 PPRC1Q5VV67 1664 aaKnown RBP11.22□□□□□ -0.61
ATG4A-201ENST00000343524 ABCA5Q8WWZ7 1642 aa11.21□□□□□ -0.61
ATG4A-201ENST00000343524 ANP32CO43423 234 aa11.21□□□□□ -0.61
ATG4A-201ENST00000343524 PRR29P0C7W0 189 aa11.21□□□□□ -0.61
ATG4A-201ENST00000343524 COL17A1Q9UMD9 1497 aaPredicted RBP11.21□□□□□ -0.61
ATG4A-201ENST00000343524 RRBP1Q9P2E9 1410 aaKnown RBP11.21□□□□□ -0.62
ATG4A-201ENST00000343524 SPATA31D1Q6ZQQ2 1576 aa11.2□□□□□ -0.62
ATG4A-201ENST00000343524 KCNH8Q96L42 1107 aa11.2□□□□□ -0.62
ATG4A-201ENST00000343524 PPP4R2Q9NY27 417 aa11.2□□□□□ -0.62
ATG4A-201ENST00000343524 CUX1P39880 1505 aa11.19□□□□□ -0.62
ATG4A-201ENST00000343524 ADAMTS12P58397 1594 aa11.18□□□□□ -0.62
ATG4A-201ENST00000343524 JPH4Q96JJ6 628 aa11.18□□□□□ -0.62
ATG4A-201ENST00000343524 TIMELESSQ9UNS1 1208 aa11.18□□□□□ -0.62
ATG4A-201ENST00000343524 GLI2P10070 1586 aa11.17□□□□□ -0.62
ATG4A-201ENST00000343524 ABCA10Q8WWZ4 1543 aa11.16□□□□□ -0.62
ATG4A-201ENST00000343524 ANP32AP39687 249 aaKnown RBP11.16□□□□□ -0.62
ATG4A-201ENST00000343524 CERKQ8TCT0 537 aa11.16□□□□□ -0.62
ATG4A-201ENST00000343524 USP35Q9P2H5 1018 aa11.15□□□□□ -0.62
ATG4A-201ENST00000343524 PPP1R15AO75807 674 aaPredicted RBP11.14□□□□□ -0.63
ATG4A-201ENST00000343524 NBR1Q14596 966 aa11.14□□□□□ -0.63
ATG4A-201ENST00000343524 TRIM52Q96A61 297 aa11.13□□□□□ -0.63
ATG4A-201ENST00000343524 RTN4Q9NQC3 1192 aaKnown RBP11.13□□□□□ -0.63
ATG4A-201ENST00000343524 FHAD1B1AJZ9 1412 aa11.13□□□□□ -0.63
ATG4A-201ENST00000343524 C11orf95C9JLR9 678 aaPredicted RBP11.13□□□□□ -0.63
ATG4A-201ENST00000343524 DDX10Q13206 875 aaKnown RBP11.12□□□□□ -0.63
ATG4A-201ENST00000343524 RUSC2Q8N2Y8 1516 aa11.12□□□□□ -0.63
ATG4A-201ENST00000343524 IPO9Q96P70 1041 aaKnown RBP11.1□□□□□ -0.63
ATG4A-201ENST00000343524 GABBR2O75899 941 aa11.09□□□□□ -0.63
ATG4A-201ENST00000343524 PCF11O94913 1555 aaKnown RBP11.09□□□□□ -0.63
ATG4A-201ENST00000343524 CCDC136Q96JN2 1154 aa11.09□□□□□ -0.63
ATG4A-201ENST00000343524 ZBTB47Q9UFB7 747 aaPredicted RBP11.09□□□□□ -0.63
ATG4A-201ENST00000343524 PLB1Q6P1J6 1458 aa11.08□□□□□ -0.64
ATG4A-201ENST00000343524 TEX14Q8IWB6 1497 aa11.08□□□□□ -0.64
ATG4A-201ENST00000343524 WASHC2AQ641Q2 1341 aa11.08□□□□□ -0.64
ATG4A-201ENST00000343524 CCNB3Q8WWL7 1395 aa11.08□□□□□ -0.64
ATG4A-201ENST00000343524 GLIPR1L2Q4G1C9 344 aa11.07□□□□□ -0.64
ATG4A-201ENST00000343524 PTPRMP28827 1452 aa11.07□□□□□ -0.64
ATG4A-201ENST00000343524 ASXL2Q76L83 1435 aa11.06□□□□□ -0.64
ATG4A-201ENST00000343524 ERICH3Q5RHP9 1530 aa11.06□□□□□ -0.64
ATG4A-201ENST00000343524 IL27Q8NEV9 243 aa11.06□□□□□ -0.64
ATG4A-201ENST00000343524 FARP1Q9Y4F1 1045 aaPredicted RBP11.06□□□□□ -0.64
ATG4A-201ENST00000343524 MAP3K4Q9Y6R4 1608 aa11.05□□□□□ -0.64
ATG4A-201ENST00000343524 EIF5BO60841 1220 aaKnown RBP11.05□□□□□ -0.64
ATG4A-201ENST00000343524 WASHC2CQ9Y4E1 1318 aa11.05□□□□□ -0.64
ATG4A-201ENST00000343524 HNRNPUQ00839 825 aaKnown RBP eCLIP11.04□□□□□ -0.64
ATG4A-201ENST00000343524 PKNOX2Q96KN3 472 aa11.04□□□□□ -0.64
ATG4A-201ENST00000343524 RAB3GAP2Q9H2M9 1393 aa11.03□□□□□ -0.64
ATG4A-201ENST00000343524 PAK3O75914 559 aaPredicted RBP11.03□□□□□ -0.64
ATG4A-201ENST00000343524 RSPH6AQ9H0K4 717 aa11.03□□□□□ -0.64
ATG4A-201ENST00000343524 ABCC2Q92887 1545 aa11.03□□□□□ -0.64
ATG4A-201ENST00000343524 PPM1GO15355 546 aaPredicted RBP11.02□□□□□ -0.65
ATG4A-201ENST00000343524 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.02□□□□□ -0.65
ATG4A-201ENST00000343524 ADAMTSL3P82987 1691 aa11.02□□□□□ -0.65
ATG4A-201ENST00000343524 SETD5Q9C0A6 1442 aa11□□□□□ -0.65
ATG4A-201ENST00000343524 RAPGEF2Q9Y4G8 1499 aa11□□□□□ -0.65
ATG4A-201ENST00000343524 KIAA0586Q9BVV6 1533 aa11□□□□□ -0.65
ATG4A-201ENST00000343524 CD44P16070 742 aaKnown RBP11□□□□□ -0.65
ATG4A-201ENST00000343524 EPRSP07814 1512 aaKnown RBP11□□□□□ -0.65
ATG4A-201ENST00000343524 SPDYE4A6NLX3 237 aa10.99□□□□□ -0.65
ATG4A-201ENST00000343524 MAP3K1Q13233 1512 aa10.98□□□□□ -0.65
ATG4A-201ENST00000343524 IRX6P78412 446 aaPredicted RBP10.97□□□□□ -0.65
ATG4A-201ENST00000343524 CREBZFQ9NS37 354 aa10.97□□□□□ -0.65
ATG4A-201ENST00000343524 PTPRGP23470 1445 aa10.97□□□□□ -0.65
ATG4A-201ENST00000343524 ZBED9Q6R2W3 1325 aa10.96□□□□□ -0.65
ATG4A-201ENST00000343524 STAG3Q9UJ98 1225 aa10.96□□□□□ -0.65
ATG4A-201ENST00000343524 CUL7Q14999 1698 aa10.95□□□□□ -0.66
ATG4A-201ENST00000343524 NEFMP07197 916 aa10.94□□□□□ -0.66
ATG4A-201ENST00000343524 HSPA2P54652 639 aa10.94□□□□□ -0.66
ATG4A-201ENST00000343524 B4GALNT3Q6L9W6 998 aa10.94□□□□□ -0.66
ATG4A-201ENST00000343524 UHRF1BP1LA0JNW5 1464 aa10.94□□□□□ -0.66
ATG4A-201ENST00000343524 FAM43AQ8N2R8 423 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms