RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 TOPBP1Q92547 1522 aa13.16□□□□□ -0.3
HOXA1-201ENST00000343060 FAM9BQ8IZU0 186 aa13.15□□□□□ -0.3
HOXA1-201ENST00000343060 IPO9Q96P70 1041 aaKnown RBP13.15□□□□□ -0.3
HOXA1-201ENST00000343060 L3MBTL2Q969R5 705 aa13.13□□□□□ -0.31
HOXA1-201ENST00000343060 NUDCQ9Y266 331 aa13.13□□□□□ -0.31
HOXA1-201ENST00000343060 MIA2Q96PC5 1412 aa13.13□□□□□ -0.31
HOXA1-201ENST00000343060 KIF7Q2M1P5 1343 aa13.13□□□□□ -0.31
HOXA1-201ENST00000343060 PRKCSHP14314 528 aaPredicted RBP13.13□□□□□ -0.31
HOXA1-201ENST00000343060 DHX29Q7Z478 1369 aaKnown RBP13.12□□□□□ -0.31
HOXA1-201ENST00000343060 ANKRD30BQ9BXX2 1392 aa13.12□□□□□ -0.31
HOXA1-201ENST00000343060 ANP32AP39687 249 aaKnown RBP13.12□□□□□ -0.31
HOXA1-201ENST00000343060 MPHOSPH9Q99550 1183 aa13.11□□□□□ -0.31
HOXA1-201ENST00000343060 NBR1Q14596 966 aa13.1□□□□□ -0.31
HOXA1-201ENST00000343060 RRP7BPQ9NSQ0 103 aa13.09□□□□□ -0.31
HOXA1-201ENST00000343060 ROCK1Q13464 1354 aa13.09□□□□□ -0.31
HOXA1-201ENST00000343060 MBD5Q9P267 1494 aa13.09□□□□□ -0.31
HOXA1-201ENST00000343060 NBPF8Q3BBV2 869 aa13.09□□□□□ -0.31
HOXA1-201ENST00000343060 CCDC136Q96JN2 1154 aa13.07□□□□□ -0.32
HOXA1-201ENST00000343060 RTL5Q5HYW3 569 aaPredicted RBP13.06□□□□□ -0.32
HOXA1-201ENST00000343060 NESP48681 1621 aa13.06□□□□□ -0.32
HOXA1-201ENST00000343060 ZBTB47Q9UFB7 747 aaPredicted RBP13.06□□□□□ -0.32
HOXA1-201ENST00000343060 BCORL1Q5H9F3 1711 aa13.06□□□□□ -0.32
HOXA1-201ENST00000343060 DNMT1P26358 1616 aaKnown RBP13.05□□□□□ -0.32
HOXA1-201ENST00000343060 ARID4BQ4LE39 1312 aaPredicted RBP13.04□□□□□ -0.32
HOXA1-201ENST00000343060 KIF14Q15058 1648 aa13.04□□□□□ -0.32
HOXA1-201ENST00000343060 EPRSP07814 1512 aaKnown RBP13.04□□□□□ -0.32
HOXA1-201ENST00000343060 LAMC3Q9Y6N6 1575 aa13.04□□□□□ -0.32
HOXA1-201ENST00000343060 CHIC2Q9UKJ5 165 aa13.03□□□□□ -0.32
HOXA1-201ENST00000343060 KDM5CP41229 1560 aa13.03□□□□□ -0.32
HOXA1-201ENST00000343060 DAPK1P53355 1430 aa13.02□□□□□ -0.33
HOXA1-201ENST00000343060 LRPPRCP42704 1394 aaKnown RBP13.02□□□□□ -0.33
HOXA1-201ENST00000343060 WDR62O43379 1518 aa13.02□□□□□ -0.33
HOXA1-201ENST00000343060 USP35Q9P2H5 1018 aa13.01□□□□□ -0.33
HOXA1-201ENST00000343060 GAPVD1Q14C86 1478 aa12.99□□□□□ -0.33
HOXA1-201ENST00000343060 ROCK2O75116 1388 aaKnown RBP12.99□□□□□ -0.33
HOXA1-201ENST00000343060 PZPP20742 1482 aa12.99□□□□□ -0.33
HOXA1-201ENST00000343060 FOXD1Q16676 465 aa12.99□□□□□ -0.33
HOXA1-201ENST00000343060 PNISRQ8TF01 805 aaKnown RBP12.99□□□□□ -0.33
HOXA1-201ENST00000343060 TCERG1O14776 1098 aaKnown RBP12.98□□□□□ -0.33
HOXA1-201ENST00000343060 URB2Q14146 1524 aaKnown RBP12.98□□□□□ -0.33
HOXA1-201ENST00000343060 ABCC5O15440 1437 aa12.98□□□□□ -0.33
HOXA1-201ENST00000343060 USP47Q96K76 1375 aa12.97□□□□□ -0.33
HOXA1-201ENST00000343060 WASHC2CQ9Y4E1 1318 aa12.97□□□□□ -0.33
HOXA1-201ENST00000343060 CDK13Q14004 1512 aaKnown RBP12.97□□□□□ -0.33
HOXA1-201ENST00000343060 E9PCH4 1651 aa12.97□□□□□ -0.33
HOXA1-201ENST00000343060 KTN1Q86UP2 1357 aaKnown RBP12.97□□□□□ -0.33
HOXA1-201ENST00000343060 ANO8Q9HCE9 1232 aaPredicted RBP12.96□□□□□ -0.33
HOXA1-201ENST00000343060 UHRF1BP1Q6BDS2 1440 aa12.96□□□□□ -0.34
HOXA1-201ENST00000343060 MS4A1P11836 297 aa12.96□□□□□ -0.34
HOXA1-201ENST00000343060 BRD4O60885 1362 aaPredicted RBP12.95□□□□□ -0.34
HOXA1-201ENST00000343060 RALGAPBQ86X10 1494 aa12.95□□□□□ -0.34
HOXA1-201ENST00000343060 RRP1P56182 461 aaKnown RBP12.95□□□□□ -0.34
HOXA1-201ENST00000343060 IQGAP2Q13576 1575 aa12.95□□□□□ -0.34
HOXA1-201ENST00000343060 ADGBQ8N7X0 1667 aa12.94□□□□□ -0.34
HOXA1-201ENST00000343060 KIF15Q9NS87 1388 aa12.93□□□□□ -0.34
HOXA1-201ENST00000343060 IL27Q8NEV9 243 aa12.93□□□□□ -0.34
HOXA1-201ENST00000343060 BACH2Q9BYV9 841 aa12.93□□□□□ -0.34
HOXA1-201ENST00000343060 KIAA1107Q9UPP5 1409 aa12.93□□□□□ -0.34
HOXA1-201ENST00000343060 SALL2Q9Y467 1007 aaPredicted RBP12.92□□□□□ -0.34
HOXA1-201ENST00000343060 ARHGEF12Q9NZN5 1544 aa12.92□□□□□ -0.34
HOXA1-201ENST00000343060 TDRD9Q8NDG6 1382 aaKnown RBP12.91□□□□□ -0.34
HOXA1-201ENST00000343060 PPM1GO15355 546 aaPredicted RBP12.91□□□□□ -0.34
HOXA1-201ENST00000343060 PDE4AP27815 886 aa12.91□□□□□ -0.34
HOXA1-201ENST00000343060 SLC4A1APQ9BWU0 796 aaKnown RBP12.91□□□□□ -0.34
HOXA1-201ENST00000343060 ADGRL2O95490 1459 aa12.91□□□□□ -0.34
HOXA1-201ENST00000343060 CROCC2H7BZ55 1655 aa12.9□□□□□ -0.34
HOXA1-201ENST00000343060 ZMYM4Q5VZL5 1548 aa12.9□□□□□ -0.34
HOXA1-201ENST00000343060 TARBP1Q13395 1621 aaKnown RBP12.89□□□□□ -0.35
HOXA1-201ENST00000343060 MYBBP1AQ9BQG0 1328 aaKnown RBP12.89□□□□□ -0.35
HOXA1-201ENST00000343060 INSRP06213 1382 aa12.89□□□□□ -0.35
HOXA1-201ENST00000343060 NEFMP07197 916 aa12.89□□□□□ -0.35
HOXA1-201ENST00000343060 EXOC6Q8TAG9 804 aa12.89□□□□□ -0.35
HOXA1-201ENST00000343060 TMC1Q8TDI8 760 aa12.89□□□□□ -0.35
HOXA1-201ENST00000343060 PBRM1Q86U86 1689 aa12.88□□□□□ -0.35
HOXA1-201ENST00000343060 PDE3BQ13370 1112 aa12.88□□□□□ -0.35
HOXA1-201ENST00000343060 RALBP1Q15311 655 aa12.88□□□□□ -0.35
HOXA1-201ENST00000343060 ADAMTS12P58397 1594 aa12.87□□□□□ -0.35
HOXA1-201ENST00000343060 RCAN3Q9UKA8 241 aa12.87□□□□□ -0.35
HOXA1-201ENST00000343060 ITSN2Q9NZM3 1697 aa12.86□□□□□ -0.35
HOXA1-201ENST00000343060 NPM2Q86SE8 214 aaKnown RBP12.85□□□□□ -0.35
HOXA1-201ENST00000343060 DDRGK1Q96HY6 314 aa12.85□□□□□ -0.35
HOXA1-201ENST00000343060 LAS1LQ9Y4W2 734 aaKnown RBP12.85□□□□□ -0.35
HOXA1-201ENST00000343060 CAMSAP2Q08AD1 1489 aa12.85□□□□□ -0.35
HOXA1-201ENST00000343060 PARD3Q8TEW0 1356 aa12.84□□□□□ -0.35
HOXA1-201ENST00000343060 KDM5DQ9BY66 1539 aa12.84□□□□□ -0.35
HOXA1-201ENST00000343060 NUP153P49790 1475 aaKnown RBP12.83□□□□□ -0.36
HOXA1-201ENST00000343060 ADCY10Q96PN6 1610 aa12.82□□□□□ -0.36
HOXA1-201ENST00000343060 KIAA0556O60303 1618 aa12.82□□□□□ -0.36
HOXA1-201ENST00000343060 CEP170Q5SW79 1584 aa12.82□□□□□ -0.36
HOXA1-201ENST00000343060 BLMP54132 1417 aaPredicted RBP12.82□□□□□ -0.36
HOXA1-201ENST00000343060 RAPGEF6Q8TEU7 1601 aa12.82□□□□□ -0.36
HOXA1-201ENST00000343060 PLEKHH2Q8IVE3 1493 aa12.81□□□□□ -0.36
HOXA1-201ENST00000343060 ZNF644Q9H582 1327 aaPredicted RBP12.81□□□□□ -0.36
HOXA1-201ENST00000343060 NLRP13Q86W25 1043 aa12.8□□□□□ -0.36
HOXA1-201ENST00000343060 KIAA0586Q9BVV6 1533 aa12.8□□□□□ -0.36
HOXA1-201ENST00000343060 POLR3GLQ9BT43 218 aa12.79□□□□□ -0.36
HOXA1-201ENST00000343060 TROQ12816 1431 aaPredicted RBP12.78□□□□□ -0.36
HOXA1-201ENST00000343060 GSE1Q14687 1217 aa12.78□□□□□ -0.36
HOXA1-201ENST00000343060 RTN4Q9NQC3 1192 aaKnown RBP12.78□□□□□ -0.36
HOXA1-201ENST00000343060 SHANK2Q9UPX8 1470 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms