RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 FGD6Q6ZV73 1430 aa16.26■□□□□ 0.19
SNRNP48-201ENST00000342415 FGD5Q6ZNL6 1462 aa16.26■□□□□ 0.19
SNRNP48-201ENST00000342415 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.25■□□□□ 0.19
SNRNP48-201ENST00000342415 PAK3O75914 559 aaPredicted RBP16.25■□□□□ 0.19
SNRNP48-201ENST00000342415 HNRNPMP52272 730 aaKnown RBP eCLIP16.24■□□□□ 0.19
SNRNP48-201ENST00000342415 SPRYD3Q8NCJ5 442 aa16.24■□□□□ 0.19
SNRNP48-201ENST00000342415 NBPF8Q3BBV2 869 aa16.23■□□□□ 0.19
SNRNP48-201ENST00000342415 C11orf95C9JLR9 678 aaPredicted RBP16.22■□□□□ 0.19
SNRNP48-201ENST00000342415 CCDC7Q96M83 1385 aa16.22■□□□□ 0.19
SNRNP48-201ENST00000342415 ROCK2O75116 1388 aaKnown RBP16.21■□□□□ 0.18
SNRNP48-201ENST00000342415 UACAQ9BZF9 1416 aa16.21■□□□□ 0.18
SNRNP48-201ENST00000342415 TMF1P82094 1093 aa16.2■□□□□ 0.18
SNRNP48-201ENST00000342415 CCDC146Q8IYE0 955 aa16.19■□□□□ 0.18
SNRNP48-201ENST00000342415 PDE4AP27815 886 aa16.19■□□□□ 0.18
SNRNP48-201ENST00000342415 KTN1Q86UP2 1357 aaKnown RBP16.18■□□□□ 0.18
SNRNP48-201ENST00000342415 TCERG1O14776 1098 aaKnown RBP16.18■□□□□ 0.18
SNRNP48-201ENST00000342415 USP47Q96K76 1375 aa16.18■□□□□ 0.18
SNRNP48-201ENST00000342415 STAG3Q9UJ98 1225 aa16.18■□□□□ 0.18
SNRNP48-201ENST00000342415 NPM1P06748 294 aaKnown RBP eCLIP16.17■□□□□ 0.18
SNRNP48-201ENST00000342415 AKNAQ7Z591 1439 aa16.17■□□□□ 0.18
SNRNP48-201ENST00000342415 SLKQ9H2G2 1235 aaPredicted RBP16.17■□□□□ 0.18
SNRNP48-201ENST00000342415 CUX1P39880 1505 aa16.17■□□□□ 0.18
SNRNP48-201ENST00000342415 FANCD2Q9BXW9 1451 aa16.17■□□□□ 0.18
SNRNP48-201ENST00000342415 ERICH3Q5RHP9 1530 aa16.16■□□□□ 0.18
SNRNP48-201ENST00000342415 NLRP13Q86W25 1043 aa16.16■□□□□ 0.18
SNRNP48-201ENST00000342415 RALBP1Q15311 655 aa16.16■□□□□ 0.18
SNRNP48-201ENST00000342415 RRP1P56182 461 aaKnown RBP16.15■□□□□ 0.18
SNRNP48-201ENST00000342415 CDCA7LQ96GN5 454 aa16.14■□□□□ 0.17
SNRNP48-201ENST00000342415 BECN1Q14457 450 aa16.14■□□□□ 0.17
SNRNP48-201ENST00000342415 TOP2BQ02880 1626 aa16.13■□□□□ 0.17
SNRNP48-201ENST00000342415 CRBNQ96SW2 442 aa16.13■□□□□ 0.17
SNRNP48-201ENST00000342415 PANK3Q9H999 370 aa16.13■□□□□ 0.17
SNRNP48-201ENST00000342415 MYOM3Q5VTT5 1437 aa16.13■□□□□ 0.17
SNRNP48-201ENST00000342415 CNTLNQ9NXG0 1405 aa16.13■□□□□ 0.17
SNRNP48-201ENST00000342415 CFTRP13569 1480 aa16.12■□□□□ 0.17
SNRNP48-201ENST00000342415 ERCC6Q03468 1493 aa16.12■□□□□ 0.17
SNRNP48-201ENST00000342415 SAFB2Q14151 953 aaKnown RBP eCLIP16.12■□□□□ 0.17
SNRNP48-201ENST00000342415 CLUAP1Q96AJ1 413 aa16.11■□□□□ 0.17
SNRNP48-201ENST00000342415 NCOA2Q15596 1464 aa16.11■□□□□ 0.17
SNRNP48-201ENST00000342415 SKAP1Q86WV1 359 aa16.1■□□□□ 0.17
SNRNP48-201ENST00000342415 FTSJ3Q8IY81 847 aaKnown RBP16.1■□□□□ 0.17
SNRNP48-201ENST00000342415 MYBBP1AQ9BQG0 1328 aaKnown RBP16.1■□□□□ 0.17
SNRNP48-201ENST00000342415 ANKRD30AQ9BXX3 1397 aa16.09■□□□□ 0.17
SNRNP48-201ENST00000342415 CDCA8Q53HL2 280 aa16.09■□□□□ 0.17
SNRNP48-201ENST00000342415 TIAM1Q13009 1591 aa16.08■□□□□ 0.17
SNRNP48-201ENST00000342415 U2SURPO15042 1029 aaKnown RBP16.08■□□□□ 0.16
SNRNP48-201ENST00000342415 GZF1Q9H116 711 aaPredicted RBP16.08■□□□□ 0.16
SNRNP48-201ENST00000342415 CASKIN1Q8WXD9 1431 aa16.07■□□□□ 0.16
SNRNP48-201ENST00000342415 KIF15Q9NS87 1388 aa16.06■□□□□ 0.16
SNRNP48-201ENST00000342415 NCAPD3P42695 1498 aa16.06■□□□□ 0.16
SNRNP48-201ENST00000342415 BCL2L13Q9BXK5 485 aa16.05■□□□□ 0.16
SNRNP48-201ENST00000342415 RRP7AQ9Y3A4 280 aaKnown RBP16.05■□□□□ 0.16
SNRNP48-201ENST00000342415 GOLGA2Q08379 1002 aa16.05■□□□□ 0.16
SNRNP48-201ENST00000342415 PDS5BQ9NTI5 1447 aa16.04■□□□□ 0.16
SNRNP48-201ENST00000342415 PLEKHG5O94827 1062 aa16.03■□□□□ 0.16
SNRNP48-201ENST00000342415 ANP32BQ92688 251 aaKnown RBP16.03■□□□□ 0.16
SNRNP48-201ENST00000342415 TPRNQ4KMQ1 711 aa16.02■□□□□ 0.16
SNRNP48-201ENST00000342415 NAIPQ13075 1403 aa16.02■□□□□ 0.16
SNRNP48-201ENST00000342415 JPH4Q96JJ6 628 aa16.02■□□□□ 0.15
SNRNP48-201ENST00000342415 MAPKBP1O60336 1514 aa16.02■□□□□ 0.15
SNRNP48-201ENST00000342415 HFM1A2PYH4 1435 aa16.01■□□□□ 0.15
SNRNP48-201ENST00000342415 ESF1Q9H501 851 aaKnown RBP16.01■□□□□ 0.15
SNRNP48-201ENST00000342415 IL27Q8NEV9 243 aa16.01■□□□□ 0.15
SNRNP48-201ENST00000342415 PNISRQ8TF01 805 aaKnown RBP16.01■□□□□ 0.15
SNRNP48-201ENST00000342415 CFAP53Q96M91 514 aa16.01■□□□□ 0.15
SNRNP48-201ENST00000342415 MORC1Q86VD1 984 aa16.01■□□□□ 0.15
SNRNP48-201ENST00000342415 PDE3BQ13370 1112 aa16■□□□□ 0.15
SNRNP48-201ENST00000342415 NBPF1Q3BBV0 1214 aa16■□□□□ 0.15
SNRNP48-201ENST00000342415 NCLP19338 710 aaKnown RBP16■□□□□ 0.15
SNRNP48-201ENST00000342415 ARID4BQ4LE39 1312 aaPredicted RBP16■□□□□ 0.15
SNRNP48-201ENST00000342415 APAF1O14727 1248 aa15.99■□□□□ 0.15
SNRNP48-201ENST00000342415 GAPVD1Q14C86 1478 aa15.99■□□□□ 0.15
SNRNP48-201ENST00000342415 NESP48681 1621 aa15.99■□□□□ 0.15
SNRNP48-201ENST00000342415 NUTM2DQ5VT03 806 aaPredicted RBP15.98■□□□□ 0.15
SNRNP48-201ENST00000342415 NAP1L5Q96NT1 182 aaPredicted RBP15.97■□□□□ 0.15
SNRNP48-201ENST00000342415 AQRO60306 1485 aaKnown RBP eCLIP15.97■□□□□ 0.153e-11■■■■■ 34.1
SNRNP48-201ENST00000342415 COG6Q9Y2V7 657 aa15.96■□□□□ 0.15
SNRNP48-201ENST00000342415 TRIM44Q96DX7 344 aaPredicted RBP15.96■□□□□ 0.14
SNRNP48-201ENST00000342415 ADAMTS8Q9UP79 889 aa15.96■□□□□ 0.14
SNRNP48-201ENST00000342415 BICRAQ9NZM4 1560 aa15.96■□□□□ 0.14
SNRNP48-201ENST00000342415 FYCO1Q9BQS8 1478 aa15.96■□□□□ 0.14
SNRNP48-201ENST00000342415 U2AF1L5P0DN76 240 aaPredicted RBP15.95■□□□□ 0.14
SNRNP48-201ENST00000342415 U2AF1Q01081 240 aaKnown RBP eCLIP15.95■□□□□ 0.14
SNRNP48-201ENST00000342415 STK26Q9P289 416 aa15.95■□□□□ 0.14
SNRNP48-201ENST00000342415 DNAJC5BQ9UF47 199 aa15.94■□□□□ 0.14
SNRNP48-201ENST00000342415 GGT6Q6P531 493 aa15.94■□□□□ 0.14
SNRNP48-201ENST00000342415 MAPK8IP3Q9UPT6 1336 aa15.94■□□□□ 0.14
SNRNP48-201ENST00000342415 PTPRKQ15262 1439 aa15.93■□□□□ 0.14
SNRNP48-201ENST00000342415 GSE1Q14687 1217 aa15.92■□□□□ 0.14
SNRNP48-201ENST00000342415 ANO8Q9HCE9 1232 aaPredicted RBP15.92■□□□□ 0.14
SNRNP48-201ENST00000342415 MFAP1P55081 439 aaKnown RBP15.92■□□□□ 0.14
SNRNP48-201ENST00000342415 PCF11O94913 1555 aaKnown RBP15.92■□□□□ 0.14
SNRNP48-201ENST00000342415 CCDC144AA2RUR9 1427 aa15.91■□□□□ 0.14
SNRNP48-201ENST00000342415 FAM161AQ3B820 660 aa15.91■□□□□ 0.14
SNRNP48-201ENST00000342415 MYH16Q9H6N6 1097 aa15.91■□□□□ 0.14
SNRNP48-201ENST00000342415 KIF3BO15066 747 aa15.9■□□□□ 0.14
SNRNP48-201ENST00000342415 TRAK1Q9UPV9 953 aa15.9■□□□□ 0.14
SNRNP48-201ENST00000342415 APBB1O00213 710 aa15.9■□□□□ 0.14
SNRNP48-201ENST00000342415 BRPF3Q9ULD4 1205 aa15.9■□□□□ 0.14
SNRNP48-201ENST00000342415 NFKBIBQ15653 356 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms