RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 LMOD2Q6P5Q4 547 aa11.12□□□□□ -0.63
RTN3-202ENST00000339997 VSIG10Q8N0Z9 540 aa11.12□□□□□ -0.63
RTN3-202ENST00000339997 FOXD4L4Q8WXT5 416 aaPredicted RBP11.12□□□□□ -0.63
RTN3-202ENST00000339997 CCNB3Q8WWL7 1395 aa11.11□□□□□ -0.63
RTN3-202ENST00000339997 KCNJ4P48050 445 aa11.11□□□□□ -0.63
RTN3-202ENST00000339997 NPM1P06748 294 aaKnown RBP eCLIP11.11□□□□□ -0.63
RTN3-202ENST00000339997 NOL8Q76FK4 1167 aaKnown RBP11.11□□□□□ -0.63
RTN3-202ENST00000339997 PLEKHD1A6NEE1 506 aa11.1□□□□□ -0.63
RTN3-202ENST00000339997 CASC1Q6TDU7 716 aa11.1□□□□□ -0.63
RTN3-202ENST00000339997 CCDC146Q8IYE0 955 aa11.1□□□□□ -0.63
RTN3-202ENST00000339997 FOXD4L6Q3SYB3 417 aaPredicted RBP11.09□□□□□ -0.63
RTN3-202ENST00000339997 L1TD1Q5T7N2 865 aaKnown RBP11.09□□□□□ -0.63
RTN3-202ENST00000339997 FOXD4L3Q6VB84 417 aaPredicted RBP11.09□□□□□ -0.63
RTN3-202ENST00000339997 OS9Q13438 667 aaPredicted RBP11.09□□□□□ -0.63
RTN3-202ENST00000339997 DRC7Q8IY82 874 aa11.09□□□□□ -0.63
RTN3-202ENST00000339997 BCL2L13Q9BXK5 485 aa11.08□□□□□ -0.64
RTN3-202ENST00000339997 GOLGA6L4A6NEF3 574 aa11.07□□□□□ -0.64
RTN3-202ENST00000339997 ANO8Q9HCE9 1232 aaPredicted RBP11.07□□□□□ -0.64
RTN3-202ENST00000339997 EXOC6Q8TAG9 804 aa11.06□□□□□ -0.64
RTN3-202ENST00000339997 TCERG1O14776 1098 aaKnown RBP11.06□□□□□ -0.64
RTN3-202ENST00000339997 NUDCQ9Y266 331 aa11.05□□□□□ -0.64
RTN3-202ENST00000339997 POGKQ9P215 609 aa11.05□□□□□ -0.64
RTN3-202ENST00000339997 WRNQ14191 1432 aaPredicted RBP eCLIP11.05□□□□□ -0.64
RTN3-202ENST00000339997 GOLGA6L3A6NEY3 463 aa11.05□□□□□ -0.64
RTN3-202ENST00000339997 ITPRIPQ8IWB1 547 aa11.05□□□□□ -0.64
RTN3-202ENST00000339997 PKD2Q13563 968 aa11.04□□□□□ -0.64
RTN3-202ENST00000339997 RAB3GAP2Q9H2M9 1393 aa11.04□□□□□ -0.64
RTN3-202ENST00000339997 PDE4AP27815 886 aa11.04□□□□□ -0.64
RTN3-202ENST00000339997 CDCA8Q53HL2 280 aa11.04□□□□□ -0.64
RTN3-202ENST00000339997 L3MBTL2Q969R5 705 aa11.03□□□□□ -0.64
RTN3-202ENST00000339997 RRP7AQ9Y3A4 280 aaKnown RBP11.03□□□□□ -0.64
RTN3-202ENST00000339997 STK26Q9P289 416 aa11.03□□□□□ -0.64
RTN3-202ENST00000339997 U2AF1L5P0DN76 240 aaPredicted RBP11.03□□□□□ -0.64
RTN3-202ENST00000339997 U2AF1Q01081 240 aaKnown RBP eCLIP11.03□□□□□ -0.641e-7■■■□□ 14.6
RTN3-202ENST00000339997 MORC1Q86VD1 984 aa11.03□□□□□ -0.64
RTN3-202ENST00000339997 TMF1P82094 1093 aa11.03□□□□□ -0.64
RTN3-202ENST00000339997 CHAF1AQ13111 956 aaPredicted RBP11.02□□□□□ -0.64
RTN3-202ENST00000339997 HSP90AA2PQ14568 343 aaPredicted RBP11.02□□□□□ -0.65
RTN3-202ENST00000339997 IL27Q8NEV9 243 aa11.01□□□□□ -0.65
RTN3-202ENST00000339997 BCL11BQ9C0K0 894 aaPredicted RBP11.01□□□□□ -0.65
RTN3-202ENST00000339997 SRPK2P78362 688 aaKnown RBP11.01□□□□□ -0.65
RTN3-202ENST00000339997 NCBP3Q53F19 620 aaKnown RBP11.01□□□□□ -0.65
RTN3-202ENST00000339997 GSE1Q14687 1217 aa11□□□□□ -0.65
RTN3-202ENST00000339997 ELL2O00472 640 aaPredicted RBP11□□□□□ -0.65
RTN3-202ENST00000339997 SETD5Q9C0A6 1442 aa10.98□□□□□ -0.65
RTN3-202ENST00000339997 GBP4Q96PP9 640 aa10.98□□□□□ -0.65
RTN3-202ENST00000339997 MPHOSPH9Q99550 1183 aa10.98□□□□□ -0.65
RTN3-202ENST00000339997 NUTM2DQ5VT03 806 aaPredicted RBP10.98□□□□□ -0.65
RTN3-202ENST00000339997 ABCC8Q09428 1581 aa10.97□□□□□ -0.65
RTN3-202ENST00000339997 TOP2AP11388 1531 aaKnown RBP10.97□□□□□ -0.65
RTN3-202ENST00000339997 KIAA2012Q0VF49 1180 aa10.97□□□□□ -0.65
RTN3-202ENST00000339997 BRPF3Q9ULD4 1205 aa10.96□□□□□ -0.65
RTN3-202ENST00000339997 CRBNQ96SW2 442 aa10.96□□□□□ -0.66
RTN3-202ENST00000339997 CEP164Q9UPV0 1460 aa10.95□□□□□ -0.66
RTN3-202ENST00000339997 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.95□□□□□ -0.66
RTN3-202ENST00000339997 PAK3O75914 559 aaPredicted RBP10.95□□□□□ -0.66
RTN3-202ENST00000339997 MLECQ14165 292 aa10.95□□□□□ -0.66
RTN3-202ENST00000339997 SMC4Q9NTJ3 1288 aa10.95□□□□□ -0.66
RTN3-202ENST00000339997 RWDD1Q9H446 243 aaPredicted RBP10.95□□□□□ -0.66
RTN3-202ENST00000339997 EEA1Q15075 1411 aa10.95□□□□□ -0.66
RTN3-202ENST00000339997 SYNJ1O43426 1573 aa10.95□□□□□ -0.66
RTN3-202ENST00000339997 CALD1Q05682 793 aaKnown RBP10.95□□□□□ -0.66
RTN3-202ENST00000339997 COG6Q9Y2V7 657 aa10.95□□□□□ -0.66
RTN3-202ENST00000339997 KTN1Q86UP2 1357 aaKnown RBP10.95□□□□□ -0.66
RTN3-202ENST00000339997 RUSC2Q8N2Y8 1516 aa10.94□□□□□ -0.66
RTN3-202ENST00000339997 GOLGA2Q08379 1002 aa10.94□□□□□ -0.66
RTN3-202ENST00000339997 HAP1P54257 671 aaPredicted RBP10.94□□□□□ -0.66
RTN3-202ENST00000339997 SLC4A10Q6U841 1118 aa10.94□□□□□ -0.66
RTN3-202ENST00000339997 FAM13BQ9NYF5 915 aa10.94□□□□□ -0.66
RTN3-202ENST00000339997 ST20-MTHFSA0A0A6YYL1 179 aa10.93□□□□□ -0.66
RTN3-202ENST00000339997 TRIM6-TRIM34B2RNG4 842 aa10.93□□□□□ -0.66
RTN3-202ENST00000339997 PRKRIP1Q9H875 184 aaPredicted RBP10.92□□□□□ -0.66
RTN3-202ENST00000339997 MS4A1P11836 297 aa10.92□□□□□ -0.66
RTN3-202ENST00000339997 GGT6Q6P531 493 aa10.92□□□□□ -0.66
RTN3-202ENST00000339997 ZNF330Q9Y3S2 320 aaPredicted RBP10.92□□□□□ -0.66
RTN3-202ENST00000339997 DDX49Q9Y6V7 483 aaKnown RBP10.92□□□□□ -0.66
RTN3-202ENST00000339997 NUTM2FA1L443 756 aa10.91□□□□□ -0.66
RTN3-202ENST00000339997 PDE4CQ08493 712 aa10.91□□□□□ -0.66
RTN3-202ENST00000339997 NRDCO43847 1150 aa10.91□□□□□ -0.66
RTN3-202ENST00000339997 KIF27Q86VH2 1401 aa10.91□□□□□ -0.66
RTN3-202ENST00000339997 TNNT3P45378 269 aaPredicted RBP10.91□□□□□ -0.66
RTN3-202ENST00000339997 GOLGA6L6A8MZA4 724 aa10.9□□□□□ -0.66
RTN3-202ENST00000339997 CHMP3Q9Y3E7 222 aa10.9□□□□□ -0.66
RTN3-202ENST00000339997 CCDC88BA6NC98 1476 aa10.9□□□□□ -0.66
RTN3-202ENST00000339997 CREBRFQ8IUR6 639 aa10.9□□□□□ -0.66
RTN3-202ENST00000339997 MCCP23508 829 aa10.9□□□□□ -0.67
RTN3-202ENST00000339997 CCDC9Q9Y3X0 531 aaKnown RBP10.89□□□□□ -0.67
RTN3-202ENST00000339997 LRRIQ1Q96JM4 1722 aa10.89□□□□□ -0.67
RTN3-202ENST00000339997 KIAA1211Q6ZU35 1233 aa10.89□□□□□ -0.67
RTN3-202ENST00000339997 ROCK2O75116 1388 aaKnown RBP10.89□□□□□ -0.67
RTN3-202ENST00000339997 FANCIQ9NVI1 1328 aa10.89□□□□□ -0.67
RTN3-202ENST00000339997 VPS8Q8N3P4 1428 aa10.88□□□□□ -0.67
RTN3-202ENST00000339997 NLRP13Q86W25 1043 aa10.88□□□□□ -0.67
RTN3-202ENST00000339997 RRP1P56182 461 aaKnown RBP10.88□□□□□ -0.67
RTN3-202ENST00000339997 NFKBIBQ15653 356 aa10.88□□□□□ -0.67
RTN3-202ENST00000339997 FAM161AQ3B820 660 aa10.88□□□□□ -0.67
RTN3-202ENST00000339997 CENPJQ9HC77 1338 aaPredicted RBP10.88□□□□□ -0.67
RTN3-202ENST00000339997 DHX57Q6P158 1386 aaKnown RBP10.87□□□□□ -0.67
RTN3-202ENST00000339997 PRDM2Q13029 1718 aa10.87□□□□□ -0.67
RTN3-202ENST00000339997 IPO8O15397 1037 aaKnown RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms