RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 UACAQ9BZF9 1416 aa13.71□□□□□ -0.21
USP54-201ENST00000339859 DAXXQ9UER7 740 aaPredicted RBP13.71□□□□□ -0.21
USP54-201ENST00000339859 CLSPNQ9HAW4 1339 aa13.71□□□□□ -0.21
USP54-201ENST00000339859 MYOM3Q5VTT5 1437 aa13.7□□□□□ -0.22
USP54-201ENST00000339859 ZNF608Q9ULD9 1512 aaPredicted RBP13.7□□□□□ -0.22
USP54-201ENST00000339859 LMOD2Q6P5Q4 547 aa13.69□□□□□ -0.22
USP54-201ENST00000339859 A0A0G2JS52 829 aa13.69□□□□□ -0.22
USP54-201ENST00000339859 PLEKHH2Q8IVE3 1493 aa13.69□□□□□ -0.22
USP54-201ENST00000339859 MPHOSPH9Q99550 1183 aa13.68□□□□□ -0.22
USP54-201ENST00000339859 CFAP53Q96M91 514 aa13.68□□□□□ -0.22
USP54-201ENST00000339859 KNSTRNQ9Y448 316 aa13.67□□□□□ -0.22
USP54-201ENST00000339859 WDR62O43379 1518 aa13.67□□□□□ -0.22
USP54-201ENST00000339859 DDX10Q13206 875 aaKnown RBP13.67□□□□□ -0.22
USP54-201ENST00000339859 EHBP1L1Q8N3D4 1523 aa13.67□□□□□ -0.22
USP54-201ENST00000339859 TMF1P82094 1093 aa13.65□□□□□ -0.22
USP54-201ENST00000339859 TIMELESSQ9UNS1 1208 aa13.65□□□□□ -0.22
USP54-201ENST00000339859 EIF3AQ14152 1382 aaKnown RBP13.64□□□□□ -0.23
USP54-201ENST00000339859 NPM2Q86SE8 214 aaKnown RBP13.64□□□□□ -0.23
USP54-201ENST00000339859 SRPK2P78362 688 aaKnown RBP13.63□□□□□ -0.23
USP54-201ENST00000339859 RAB3GAP2Q9H2M9 1393 aa13.63□□□□□ -0.23
USP54-201ENST00000339859 SIN3AQ96ST3 1273 aa13.62□□□□□ -0.23
USP54-201ENST00000339859 LRRC9Q6ZRR7 1453 aa13.62□□□□□ -0.23
USP54-201ENST00000339859 STK26Q9P289 416 aa13.62□□□□□ -0.23
USP54-201ENST00000339859 NCOA2Q15596 1464 aa13.61□□□□□ -0.23
USP54-201ENST00000339859 POGZQ7Z3K3 1410 aa13.61□□□□□ -0.23
USP54-201ENST00000339859 TROQ12816 1431 aaPredicted RBP13.6□□□□□ -0.23
USP54-201ENST00000339859 FGD6Q6ZV73 1430 aa13.59□□□□□ -0.23
USP54-201ENST00000339859 CCDC144AA2RUR9 1427 aa13.58□□□□□ -0.24
USP54-201ENST00000339859 HDGFL2Q7Z4V5 671 aaPredicted RBP13.58□□□□□ -0.24
USP54-201ENST00000339859 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.58□□□□□ -0.24
USP54-201ENST00000339859 ROCK2O75116 1388 aaKnown RBP13.58□□□□□ -0.24
USP54-201ENST00000339859 FOXD1Q16676 465 aa13.57□□□□□ -0.24
USP54-201ENST00000339859 FAM9BQ8IZU0 186 aa13.57□□□□□ -0.24
USP54-201ENST00000339859 KIF15Q9NS87 1388 aa13.56□□□□□ -0.24
USP54-201ENST00000339859 EIF4G3O43432 1585 aaKnown RBP13.56□□□□□ -0.24
USP54-201ENST00000339859 PPM1GO15355 546 aaPredicted RBP13.56□□□□□ -0.24
USP54-201ENST00000339859 SAFB2Q14151 953 aaKnown RBP eCLIP13.56□□□□□ -0.24
USP54-201ENST00000339859 WDR97A6NE52 1622 aa13.56□□□□□ -0.24
USP54-201ENST00000339859 MYT1Q01538 1121 aa13.56□□□□□ -0.24
USP54-201ENST00000339859 NUDCQ9Y266 331 aa13.56□□□□□ -0.24
USP54-201ENST00000339859 ARAP1Q96P48 1450 aa13.55□□□□□ -0.24
USP54-201ENST00000339859 SUPT6HQ7KZ85 1726 aaKnown RBP13.55□□□□□ -0.24
USP54-201ENST00000339859 HIRIP3Q9BW71 556 aaPredicted RBP13.55□□□□□ -0.24
USP54-201ENST00000339859 KIF14Q15058 1648 aa13.55□□□□□ -0.24
USP54-201ENST00000339859 VGFO15240 615 aaPredicted RBP13.54□□□□□ -0.24
USP54-201ENST00000339859 MRS2Q9HD23 443 aa13.54□□□□□ -0.24
USP54-201ENST00000339859 ADAMTS12P58397 1594 aa13.54□□□□□ -0.24
USP54-201ENST00000339859 CD109Q6YHK3 1445 aa13.54□□□□□ -0.24
USP54-201ENST00000339859 PNNQ9H307 717 aaKnown RBP13.53□□□□□ -0.24
USP54-201ENST00000339859 EPRSP07814 1512 aaKnown RBP13.52□□□□□ -0.25
USP54-201ENST00000339859 PLB1Q6P1J6 1458 aa13.52□□□□□ -0.25
USP54-201ENST00000339859 NUTM2DQ5VT03 806 aaPredicted RBP13.51□□□□□ -0.25
USP54-201ENST00000339859 PBRM1Q86U86 1689 aa13.5□□□□□ -0.25
USP54-201ENST00000339859 MIA2Q96PC5 1412 aa13.5□□□□□ -0.25
USP54-201ENST00000339859 PAK3O75914 559 aaPredicted RBP13.5□□□□□ -0.25
USP54-201ENST00000339859 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.5□□□□□ -0.25
USP54-201ENST00000339859 SCAPERQ9BY12 1400 aa13.5□□□□□ -0.25
USP54-201ENST00000339859 ZNF644Q9H582 1327 aaPredicted RBP13.49□□□□□ -0.25
USP54-201ENST00000339859 MAPK8IP3Q9UPT6 1336 aa13.49□□□□□ -0.25
USP54-201ENST00000339859 AFAP1Q8N556 730 aa13.49□□□□□ -0.25
USP54-201ENST00000339859 CDK13Q14004 1512 aaKnown RBP13.48□□□□□ -0.25
USP54-201ENST00000339859 HNRNPUQ00839 825 aaKnown RBP eCLIP13.48□□□□□ -0.25
USP54-201ENST00000339859 TIAM1Q13009 1591 aa13.48□□□□□ -0.25
USP54-201ENST00000339859 ANKRD50Q9ULJ7 1429 aa13.47□□□□□ -0.25
USP54-201ENST00000339859 CTTNBP2Q8WZ74 1663 aa13.47□□□□□ -0.25
USP54-201ENST00000339859 BCL11AQ9H165 835 aa13.47□□□□□ -0.25
USP54-201ENST00000339859 TEX14Q8IWB6 1497 aa13.47□□□□□ -0.25
USP54-201ENST00000339859 SALL2Q9Y467 1007 aaPredicted RBP13.46□□□□□ -0.25
USP54-201ENST00000339859 C9orf84Q5VXU9 1444 aa13.46□□□□□ -0.25
USP54-201ENST00000339859 PCF11O94913 1555 aaKnown RBP13.46□□□□□ -0.26
USP54-201ENST00000339859 PHLDB1Q86UU1 1377 aa13.46□□□□□ -0.26
USP54-201ENST00000339859 MORC1Q86VD1 984 aa13.44□□□□□ -0.26
USP54-201ENST00000339859 TERF2IPQ9NYB0 399 aa13.44□□□□□ -0.26
USP54-201ENST00000339859 NGDNQ8NEJ9 315 aaKnown RBP13.44□□□□□ -0.26
USP54-201ENST00000339859 ADGRL1O94910 1474 aa13.43□□□□□ -0.26
USP54-201ENST00000339859 RAPGEF6Q8TEU7 1601 aa13.43□□□□□ -0.26
USP54-201ENST00000339859 CC2D1BQ5T0F9 858 aaKnown RBP13.42□□□□□ -0.26
USP54-201ENST00000339859 CSB-PGBD3P0DP91 1061 aa13.42□□□□□ -0.26
USP54-201ENST00000339859 TNNT2P45379 298 aaPredicted RBP13.42□□□□□ -0.26
USP54-201ENST00000339859 ARHGEF11O15085 1522 aa13.42□□□□□ -0.26
USP54-201ENST00000339859 RAPGEF3O95398 923 aa13.42□□□□□ -0.26
USP54-201ENST00000339859 STAC3Q96MF2 364 aa13.42□□□□□ -0.26
USP54-201ENST00000339859 SOX12O15370 315 aa13.41□□□□□ -0.26
USP54-201ENST00000339859 HSPA5P11021 654 aaKnown RBP13.4□□□□□ -0.26
USP54-201ENST00000339859 AKNAQ7Z591 1439 aa13.4□□□□□ -0.26
USP54-201ENST00000339859 CCDC9Q9Y3X0 531 aaKnown RBP13.4□□□□□ -0.27
USP54-201ENST00000339859 THEMISQ8N1K5 641 aaPredicted RBP13.39□□□□□ -0.27
USP54-201ENST00000339859 DENND4BO75064 1496 aaPredicted RBP13.39□□□□□ -0.27
USP54-201ENST00000339859 U2SURPO15042 1029 aaKnown RBP13.39□□□□□ -0.27
USP54-201ENST00000339859 CCDC141Q6ZP82 1450 aa13.39□□□□□ -0.27
USP54-201ENST00000339859 ARXQ96QS3 562 aa13.38□□□□□ -0.27
USP54-201ENST00000339859 TRAK1Q9UPV9 953 aa13.38□□□□□ -0.27
USP54-201ENST00000339859 L3MBTL2Q969R5 705 aa13.37□□□□□ -0.27
USP54-201ENST00000339859 MYH16Q9H6N6 1097 aa13.37□□□□□ -0.27
USP54-201ENST00000339859 KIAA0556O60303 1618 aa13.37□□□□□ -0.27
USP54-201ENST00000339859 ASXL2Q76L83 1435 aa13.37□□□□□ -0.27
USP54-201ENST00000339859 UGGT2Q9NYU1 1516 aa13.37□□□□□ -0.27
USP54-201ENST00000339859 RRBP1Q9P2E9 1410 aaKnown RBP13.37□□□□□ -0.27
USP54-201ENST00000339859 DAPK1P53355 1430 aa13.37□□□□□ -0.27
USP54-201ENST00000339859 ATF3P18847 181 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms