RNA–Protein interactions for RNA: ENST00000339430.9

LITAF-201, Transcript of lipopolysaccharide induced TNF factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LITAF, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-201ENST00000339430 KCNH8Q96L42 1107 aa23.56■■□□□ 1.36
LITAF-201ENST00000339430 ABCC10Q5T3U5 1492 aa23.56■■□□□ 1.36
LITAF-201ENST00000339430 GPATCH8Q9UKJ3 1502 aaKnown RBP23.55■■□□□ 1.36
LITAF-201ENST00000339430 CYB5RLQ6IPT4 315 aa23.55■■□□□ 1.36
LITAF-201ENST00000339430 CFDP1Q9UEE9 299 aaPredicted RBP23.52■■□□□ 1.36
LITAF-201ENST00000339430 NPM1P06748 294 aaKnown RBP eCLIP23.52■■□□□ 1.36
LITAF-201ENST00000339430 TCOF1Q13428 1488 aaKnown RBP23.52■■□□□ 1.36
LITAF-201ENST00000339430 ITSN2Q9NZM3 1697 aa23.52■■□□□ 1.36
LITAF-201ENST00000339430 ZNF644Q9H582 1327 aaPredicted RBP23.5■■□□□ 1.35
LITAF-201ENST00000339430 CDC42BPAQ5VT25 1732 aa23.49■■□□□ 1.35
LITAF-201ENST00000339430 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.48■■□□□ 1.35
LITAF-201ENST00000339430 ZNF777Q9ULD5 760 aaPredicted RBP23.48■■□□□ 1.35
LITAF-201ENST00000339430 TTC37Q6PGP7 1564 aa23.47■■□□□ 1.35
LITAF-201ENST00000339430 WDR7Q9Y4E6 1490 aa23.47■■□□□ 1.35
LITAF-201ENST00000339430 ASXL2Q76L83 1435 aa23.46■■□□□ 1.35
LITAF-201ENST00000339430 PTPRKQ15262 1439 aa23.45■■□□□ 1.34
LITAF-201ENST00000339430 CAMSAP2Q08AD1 1489 aa23.43■■□□□ 1.34
LITAF-201ENST00000339430 PREX2Q70Z35 1606 aa23.4■■□□□ 1.34
LITAF-201ENST00000339430 CDC42BPBQ9Y5S2 1711 aa23.4■■□□□ 1.34
LITAF-201ENST00000339430 PELP1Q8IZL8 1130 aaKnown RBP23.38■■□□□ 1.33
LITAF-201ENST00000339430 MYO5CQ9NQX4 1742 aa23.38■■□□□ 1.33
LITAF-201ENST00000339430 CHIC2Q9UKJ5 165 aa23.37■■□□□ 1.33
LITAF-201ENST00000339430 HFM1A2PYH4 1435 aa23.36■■□□□ 1.33
LITAF-201ENST00000339430 ARHGAP5Q13017 1502 aa23.36■■□□□ 1.33
LITAF-201ENST00000339430 DAPK1P53355 1430 aa23.35■■□□□ 1.33
LITAF-201ENST00000339430 DNMT1P26358 1616 aaKnown RBP23.34■■□□□ 1.33
LITAF-201ENST00000339430 ABCC5O15440 1437 aa23.34■■□□□ 1.33
LITAF-201ENST00000339430 PLCH2O75038 1416 aa23.33■■□□□ 1.33
LITAF-201ENST00000339430 NAIPQ13075 1403 aa23.32■■□□□ 1.32
LITAF-201ENST00000339430 SAMD9LQ8IVG5 1584 aa23.31■■□□□ 1.32
LITAF-201ENST00000339430 HIRIP3Q9BW71 556 aaPredicted RBP23.3■■□□□ 1.32
LITAF-201ENST00000339430 ABCA9Q8IUA7 1624 aa23.3■■□□□ 1.32
LITAF-201ENST00000339430 TIMELESSQ9UNS1 1208 aa23.3■■□□□ 1.32
LITAF-201ENST00000339430 PPP1R15AO75807 674 aaPredicted RBP23.29■■□□□ 1.32
LITAF-201ENST00000339430 HNRNPMP52272 730 aaKnown RBP eCLIP23.29■■□□□ 1.321e-6■■■□□ 15.6
LITAF-201ENST00000339430 RRP7BPQ9NSQ0 103 aa23.29■■□□□ 1.32
LITAF-201ENST00000339430 DDX10Q13206 875 aaKnown RBP23.28■■□□□ 1.32
LITAF-201ENST00000339430 EFCAB2Q5VUJ9 269 aa23.27■■□□□ 1.32
LITAF-201ENST00000339430 TONSLQ96HA7 1378 aa23.25■■□□□ 1.31
LITAF-201ENST00000339430 MBD5Q9P267 1494 aa23.24■■□□□ 1.31
LITAF-201ENST00000339430 AKNAQ7Z591 1439 aa23.23■■□□□ 1.31
LITAF-201ENST00000339430 SYCP2Q9BX26 1530 aa23.23■■□□□ 1.31
LITAF-201ENST00000339430 CROCC2H7BZ55 1655 aa23.22■■□□□ 1.31
LITAF-201ENST00000339430 ARAP3Q8WWN8 1544 aa23.22■■□□□ 1.31
LITAF-201ENST00000339430 ROCK1Q13464 1354 aa23.21■■□□□ 1.31
LITAF-201ENST00000339430 ARHGEF5Q12774 1597 aa23.21■■□□□ 1.31
LITAF-201ENST00000339430 PLEKHH2Q8IVE3 1493 aa23.19■■□□□ 1.3
LITAF-201ENST00000339430 FANCAO15360 1455 aa23.19■■□□□ 1.3
LITAF-201ENST00000339430 TSPY4P0CV99 314 aa23.19■■□□□ 1.3
LITAF-201ENST00000339430 TSPY10P0CW01 314 aa23.19■■□□□ 1.3
LITAF-201ENST00000339430 KIAA1107Q9UPP5 1409 aa23.19■■□□□ 1.3
LITAF-201ENST00000339430 CD109Q6YHK3 1445 aa23.18■■□□□ 1.3
LITAF-201ENST00000339430 CCDC141Q6ZP82 1450 aa23.18■■□□□ 1.3
LITAF-201ENST00000339430 ARHGEF12Q9NZN5 1544 aa23.18■■□□□ 1.3
LITAF-201ENST00000339430 GCC2Q8IWJ2 1684 aa23.17■■□□□ 1.3
LITAF-201ENST00000339430 RSPH4AQ5TD94 716 aa23.17■■□□□ 1.3
LITAF-201ENST00000339430 C9orf84Q5VXU9 1444 aa23.17■■□□□ 1.3
LITAF-201ENST00000339430 SHANK2Q9UPX8 1470 aa23.16■■□□□ 1.3
LITAF-201ENST00000339430 NCOA1Q15788 1441 aa23.16■■□□□ 1.3
LITAF-201ENST00000339430 ABCC1P33527 1531 aa23.16■■□□□ 1.3
LITAF-201ENST00000339430 ADGBQ8N7X0 1667 aa23.15■■□□□ 1.3
LITAF-201ENST00000339430 KDM6BO15054 1643 aa23.15■■□□□ 1.3
LITAF-201ENST00000339430 TRIM52Q96A61 297 aa23.14■■□□□ 1.3
LITAF-201ENST00000339430 ADGRL2O95490 1459 aa23.14■■□□□ 1.29
LITAF-201ENST00000339430 ANKRD30AQ9BXX3 1397 aa23.13■■□□□ 1.29
LITAF-201ENST00000339430 TRAPPC8Q9Y2L5 1435 aa23.1■■□□□ 1.29
LITAF-201ENST00000339430 FAM69CQ0P6D2 419 aa23.09■■□□□ 1.29
LITAF-201ENST00000339430 ADGRL1O94910 1474 aa23.09■■□□□ 1.29
LITAF-201ENST00000339430 GLI2P10070 1586 aa23.08■■□□□ 1.28
LITAF-201ENST00000339430 DIP2BQ9P265 1576 aa23.07■■□□□ 1.28
LITAF-201ENST00000339430 AFAP1Q8N556 730 aa23.07■■□□□ 1.28
LITAF-201ENST00000339430 DENND4BO75064 1496 aaPredicted RBP23.07■■□□□ 1.28
LITAF-201ENST00000339430 MAP3K4Q9Y6R4 1608 aa23.06■■□□□ 1.28
LITAF-201ENST00000339430 SCAPERQ9BY12 1400 aa23.06■■□□□ 1.28
LITAF-201ENST00000339430 MAST1Q9Y2H9 1570 aa23.04■■□□□ 1.28
LITAF-201ENST00000339430 KIF15Q9NS87 1388 aa23.04■■□□□ 1.28
LITAF-201ENST00000339430 CFAP74Q9C0B2 1584 aa23.02■■□□□ 1.28
LITAF-201ENST00000339430 ANKRD50Q9ULJ7 1429 aa23.02■■□□□ 1.28
LITAF-201ENST00000339430 FOXD1Q16676 465 aa23.01■■□□□ 1.27
LITAF-201ENST00000339430 MPHOSPH9Q99550 1183 aa23.01■■□□□ 1.27
LITAF-201ENST00000339430 SPAG9O60271 1321 aaKnown RBP23■■□□□ 1.27
LITAF-201ENST00000339430 DNAJC5Q9H3Z4 198 aa22.99■■□□□ 1.27
LITAF-201ENST00000339430 SUPT16HQ9Y5B9 1047 aaKnown RBP22.99■■□□□ 1.27
LITAF-201ENST00000339430 NEO1Q92859 1461 aa22.98■■□□□ 1.27
LITAF-201ENST00000339430 ANP32CO43423 234 aa22.98■■□□□ 1.27
LITAF-201ENST00000339430 PLXNC1O60486 1568 aa22.96■■□□□ 1.27
LITAF-201ENST00000339430 TSPOAP1O95153 1857 aa22.94■■□□□ 1.26
LITAF-201ENST00000339430 ZFYVE16Q7Z3T8 1539 aa22.94■■□□□ 1.26
LITAF-201ENST00000339430 RTEL1-TNFRSF6BF6WH68 1400 aa22.94■■□□□ 1.26
LITAF-201ENST00000339430 MYT1LQ9UL68 1186 aa22.93■■□□□ 1.26
LITAF-201ENST00000339430 ZNF518AQ6AHZ1 1483 aa22.93■■□□□ 1.26
LITAF-201ENST00000339430 KIF13AQ9H1H9 1805 aa22.93■■□□□ 1.26
LITAF-201ENST00000339430 POGZQ7Z3K3 1410 aa22.92■■□□□ 1.26
LITAF-201ENST00000339430 ATP7AQ04656 1500 aa22.91■■□□□ 1.26
LITAF-201ENST00000339430 INO80Q9ULG1 1556 aaPredicted RBP22.9■■□□□ 1.26
LITAF-201ENST00000339430 RAPGEF3O95398 923 aa22.89■■□□□ 1.26
LITAF-201ENST00000339430 DUOX2Q9NRD8 1548 aa22.89■■□□□ 1.25
LITAF-201ENST00000339430 PPRC1Q5VV67 1664 aaKnown RBP22.89■■□□□ 1.25
LITAF-201ENST00000339430 CCER2I3L3R5 266 aa22.88■■□□□ 1.25
LITAF-201ENST00000339430 HSPA5P11021 654 aaKnown RBP22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms