RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TMF1P82094 1093 aa16.06■□□□□ 0.16
SDC3-201ENST00000336798 MS4A1P11836 297 aa16.05■□□□□ 0.16
SDC3-201ENST00000336798 CHMP3Q9Y3E7 222 aa16.05■□□□□ 0.16
SDC3-201ENST00000336798 GZF1Q9H116 711 aaPredicted RBP16.05■□□□□ 0.16
SDC3-201ENST00000336798 VSIG10Q8N0Z9 540 aa16.04■□□□□ 0.16
SDC3-201ENST00000336798 GGT6Q6P531 493 aa16.04■□□□□ 0.16
SDC3-201ENST00000336798 NOC3LQ8WTT2 800 aaKnown RBP16.03■□□□□ 0.16
SDC3-201ENST00000336798 CEP162Q5TB80 1403 aa16.02■□□□□ 0.16
SDC3-201ENST00000336798 HSP90B1P14625 803 aaKnown RBP16.02■□□□□ 0.16
SDC3-201ENST00000336798 KIAA1211Q6ZU35 1233 aa16.01■□□□□ 0.15
SDC3-201ENST00000336798 CREBRFQ8IUR6 639 aa16.01■□□□□ 0.15
SDC3-201ENST00000336798 PODXL2Q9NZ53 605 aa16.01■□□□□ 0.15
SDC3-201ENST00000336798 KIAA2012Q0VF49 1180 aa16■□□□□ 0.15
SDC3-201ENST00000336798 FOXD1Q16676 465 aa15.99■□□□□ 0.15
SDC3-201ENST00000336798 ITPRIPQ8IWB1 547 aa15.99■□□□□ 0.15
SDC3-201ENST00000336798 ERCC6Q03468 1493 aa15.99■□□□□ 0.15
SDC3-201ENST00000336798 A0A0U1RQG5 324 aaPredicted RBP15.99■□□□□ 0.15
SDC3-201ENST00000336798 NOL8Q76FK4 1167 aaKnown RBP15.99■□□□□ 0.15
SDC3-201ENST00000336798 GOLGA3Q08378 1498 aa15.98■□□□□ 0.15
SDC3-201ENST00000336798 EIF4G1Q04637 1599 aaKnown RBP15.98■□□□□ 0.15
SDC3-201ENST00000336798 GORABQ5T7V8 394 aa15.97■□□□□ 0.15
SDC3-201ENST00000336798 KANK1Q14678 1352 aa15.97■□□□□ 0.15
SDC3-201ENST00000336798 SLKQ9H2G2 1235 aaPredicted RBP15.97■□□□□ 0.15
SDC3-201ENST00000336798 FOXD4L1Q9NU39 408 aa15.96■□□□□ 0.15
SDC3-201ENST00000336798 TMX4Q9H1E5 349 aaPredicted RBP15.96■□□□□ 0.15
SDC3-201ENST00000336798 NUTM2DQ5VT03 806 aaPredicted RBP15.96■□□□□ 0.15
SDC3-201ENST00000336798 PKNOX2Q96KN3 472 aa15.96■□□□□ 0.15
SDC3-201ENST00000336798 CCNB3Q8WWL7 1395 aa15.95■□□□□ 0.14
SDC3-201ENST00000336798 G3V3G9 751 aa15.95■□□□□ 0.14
SDC3-201ENST00000336798 DCAF8Q5TAQ9 597 aa15.95■□□□□ 0.14
SDC3-201ENST00000336798 HDGFP51858 240 aaKnown RBP15.95■□□□□ 0.14
SDC3-201ENST00000336798 U2AF1L5P0DN76 240 aaPredicted RBP15.95■□□□□ 0.14
SDC3-201ENST00000336798 U2AF1Q01081 240 aaKnown RBP eCLIP15.95■□□□□ 0.14
SDC3-201ENST00000336798 TAF7LQ5H9L4 462 aa15.95■□□□□ 0.14
SDC3-201ENST00000336798 HDGFL2Q7Z4V5 671 aaPredicted RBP15.94■□□□□ 0.14
SDC3-201ENST00000336798 TRIM6-TRIM34B2RNG4 842 aa15.93■□□□□ 0.14
SDC3-201ENST00000336798 RBM19Q9Y4C8 960 aaKnown RBP15.92■□□□□ 0.14
SDC3-201ENST00000336798 VPS53Q5VIR6 699 aa15.92■□□□□ 0.14
SDC3-201ENST00000336798 RASSF8Q8NHQ8 419 aa15.91■□□□□ 0.14
SDC3-201ENST00000336798 NUTM2FA1L443 756 aa15.91■□□□□ 0.14
SDC3-201ENST00000336798 SLC4A10Q6U841 1118 aa15.91■□□□□ 0.14
SDC3-201ENST00000336798 MFAP1P55081 439 aaKnown RBP15.91■□□□□ 0.14
SDC3-201ENST00000336798 LTV1Q96GA3 475 aaPredicted RBP15.91■□□□□ 0.14
SDC3-201ENST00000336798 L1TD1Q5T7N2 865 aaKnown RBP15.9■□□□□ 0.14
SDC3-201ENST00000336798 RB1CC1Q8TDY2 1594 aa15.9■□□□□ 0.14
SDC3-201ENST00000336798 FOXD4L5Q5VV16 416 aaPredicted RBP15.9■□□□□ 0.14
SDC3-201ENST00000336798 FOXD4L4Q8WXT5 416 aaPredicted RBP15.9■□□□□ 0.14
SDC3-201ENST00000336798 WWC1Q8IX03 1113 aa15.9■□□□□ 0.14
SDC3-201ENST00000336798 TOMM22Q9NS69 142 aa15.89■□□□□ 0.13
SDC3-201ENST00000336798 HSPA5P11021 654 aaKnown RBP15.89■□□□□ 0.13
SDC3-201ENST00000336798 MYO15BQ96JP2 1530 aa15.89■□□□□ 0.13
SDC3-201ENST00000336798 FBXO3Q9UK99 471 aa15.88■□□□□ 0.13
SDC3-201ENST00000336798 IPO8O15397 1037 aaKnown RBP15.87■□□□□ 0.13
SDC3-201ENST00000336798 CCDC146Q8IYE0 955 aa15.87■□□□□ 0.13
SDC3-201ENST00000336798 FRAT2O75474 233 aaPredicted RBP15.86■□□□□ 0.13
SDC3-201ENST00000336798 CLUAP1Q96AJ1 413 aa15.85■□□□□ 0.13
SDC3-201ENST00000336798 HSP90AA2PQ14568 343 aaPredicted RBP15.85■□□□□ 0.13
SDC3-201ENST00000336798 PKD2Q13563 968 aa15.84■□□□□ 0.13
SDC3-201ENST00000336798 KIF27Q86VH2 1401 aa15.84■□□□□ 0.13
SDC3-201ENST00000336798 GBP4Q96PP9 640 aa15.84■□□□□ 0.13
SDC3-201ENST00000336798 KTN1Q86UP2 1357 aaKnown RBP15.83■□□□□ 0.13
SDC3-201ENST00000336798 STK31Q9BXU1 1019 aa15.83■□□□□ 0.12
SDC3-201ENST00000336798 WRNQ14191 1432 aaPredicted RBP eCLIP15.82■□□□□ 0.12
SDC3-201ENST00000336798 SMC4Q9NTJ3 1288 aa15.82■□□□□ 0.12
SDC3-201ENST00000336798 GTF2E1P29083 439 aaPredicted RBP15.82■□□□□ 0.12
SDC3-201ENST00000336798 MARCH6O60337 910 aa15.81■□□□□ 0.12
SDC3-201ENST00000336798 TSHZ2Q9NRE2 1034 aa15.81■□□□□ 0.12
SDC3-201ENST00000336798 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.81■□□□□ 0.12
SDC3-201ENST00000336798 TIMELESSQ9UNS1 1208 aa15.81■□□□□ 0.12
SDC3-201ENST00000336798 RWDD1Q9H446 243 aaPredicted RBP15.81■□□□□ 0.12
SDC3-201ENST00000336798 TNNT3P45378 269 aaPredicted RBP15.81■□□□□ 0.12
SDC3-201ENST00000336798 TPM4P67936 248 aa15.81■□□□□ 0.12
SDC3-201ENST00000336798 ROCK2O75116 1388 aaKnown RBP15.8■□□□□ 0.12
SDC3-201ENST00000336798 PES1O00541 588 aaKnown RBP15.8■□□□□ 0.12
SDC3-201ENST00000336798 RCAN3Q9UKA8 241 aa15.8■□□□□ 0.12
SDC3-201ENST00000336798 SPAG9O60271 1321 aaKnown RBP15.8■□□□□ 0.12
SDC3-201ENST00000336798 GPATCH3Q96I76 525 aa15.8■□□□□ 0.12
SDC3-201ENST00000336798 MSH5O43196 834 aa15.79■□□□□ 0.12
SDC3-201ENST00000336798 RAD21O60216 631 aa15.79■□□□□ 0.12
SDC3-201ENST00000336798 RSPH6AQ9H0K4 717 aa15.79■□□□□ 0.12
SDC3-201ENST00000336798 HTATSF1O43719 755 aaKnown RBP15.79■□□□□ 0.12
SDC3-201ENST00000336798 FOXD4L6Q3SYB3 417 aaPredicted RBP15.78■□□□□ 0.12
SDC3-201ENST00000336798 FOXD4L3Q6VB84 417 aaPredicted RBP15.78■□□□□ 0.12
SDC3-201ENST00000336798 NGDNQ8NEJ9 315 aaKnown RBP15.78■□□□□ 0.12
SDC3-201ENST00000336798 CFAP44Q96MT7 982 aa15.77■□□□□ 0.12
SDC3-201ENST00000336798 BAZ1BQ9UIG0 1483 aaKnown RBP15.77■□□□□ 0.12
SDC3-201ENST00000336798 AMPHP49418 695 aa15.76■□□□□ 0.11
SDC3-201ENST00000336798 CALD1Q05682 793 aaKnown RBP15.76■□□□□ 0.11
SDC3-201ENST00000336798 NGEFQ8N5V2 710 aa15.75■□□□□ 0.11
SDC3-201ENST00000336798 EEA1Q15075 1411 aa15.74■□□□□ 0.11
SDC3-201ENST00000336798 SYAP1Q96A49 352 aaPredicted RBP15.74■□□□□ 0.11
SDC3-201ENST00000336798 RRP7AQ9Y3A4 280 aaKnown RBP15.74■□□□□ 0.11
SDC3-201ENST00000336798 CEP89Q96ST8 783 aa15.74■□□□□ 0.11
SDC3-201ENST00000336798 CEP164Q9UPV0 1460 aa15.73■□□□□ 0.11
SDC3-201ENST00000336798 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.72■□□□□ 0.11
SDC3-201ENST00000336798 ELL2O00472 640 aaPredicted RBP15.72■□□□□ 0.11
SDC3-201ENST00000336798 GOLGA6L1Q8N7Z2 621 aa15.72■□□□□ 0.11
SDC3-201ENST00000336798 SF3A1Q15459 793 aaKnown RBP15.72■□□□□ 0.11
SDC3-201ENST00000336798 RILPL2Q969X0 211 aa15.71■□□□□ 0.11
SDC3-201ENST00000336798 GOLGA6L3A6NEY3 463 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms